spiral_inline_binning_ncc_lungwater.xml

<?xml version="1.0" encoding="UTF-8"?>
<configuration>
    <version>2</version>

    <readers>
        <reader>
            <dll>gadgetron_core_readers</dll>
            <classname>AcquisitionReader</classname>
        </reader>
        <reader>
            <dll>gadgetron_core_readers</dll>
            <classname>WaveformReader</classname>
        </reader>
    </readers>

    <writers>
        <writer>
            <dll>gadgetron_core_writers</dll>
            <classname>ImageWriter</classname>
        </writer>
    </writers>

    <stream>
      
        <!-- NHLBI GADGETRON TOOLBOX -->
        <!-- Convert gradient waveforms into trajectories -->
        <gadget>
            <name>WaveformToTrajectory</name>
            <dll>nhlbi_gt_toolbox</dll>
            <classname>WaveformToTrajectory</classname>
            <property><name>perform_GIRF</name><value>true</value></property>
            <property><name>GIRF_folder</name><value>/opt/data/GIRF/</value></property>
        </gadget>

        <!-- NHLBI GADGETRON TOOLBOX -->
       <gadget>
            <dll>nhlbi_gt_toolbox</dll>
            <classname>GatingandBinningGadget</classname>
            <property><name>acceptancePercentage</name><value>40</value></property>
            <property><name>testAcceptance</name><value>false</value></property>
            <property><name>useDC</name><value>false</value></property>
            <property><name>cs_freq_filter</name><value>0.1</value></property>
            <property><name>dotwostepSVD</name><value>true</value></property>
            <property><name>useStableBinning</name><value>true</value></property>
            <property><name>numberOfBins</name><value>6</value></property>
            <property><name>up_perc</name><value>0.95</value></property>
            <property><name>low_perc</name><value>0.05</value></property>
            <property><name>debug</name><value>true</value></property>
        </gadget>

        <!-- NHLBI GADGETRON TOOLBOX -->
        <gadget>
            <name>SpiralAccumulateGated</name>
            <dll>nhlbi_gt_toolbox</dll>
            <classname>SpiralAccumulateGated</classname>
            <property><name>generateTraj</name><value>false</value></property>
            <property><name>perform_GIRF</name><value>false</value></property>
            <property><name>skipPermute</name><value>true</value></property>            
        </gadget>

        <!-- NHLBI GADGETRON TOOLBOX -->
        <gadget>
            <name>WeightsEstimationGadget</name>
            <dll>nhlbi_gt_toolbox</dll>
            <classname>WeightsEstimationGadget</classname>
            <property><name>iterations</name><value>10</value></property>
            <property><name>overSampling</name><value>5.5</value></property>
        </gadget>
        
        <!-- NHLBI GADGETRON TOOLBOX -->
        <gadget>
            <name>SenseGriddingReconGadget3D_Parallel</name>
            <dll>nhlbi_gt_toolbox</dll>
            <classname>SenseGriddingReconGadget3D_Parallel</classname>
            <property><name>iterationsSense</name><value>3</value></property>
            <property><name>tolSense</name><value>1e-1</value></property>
            <property><name>fwidth</name><value>24</value></property>
            <property><name>fsigma</name><value>1.2</value></property>
            <property><name>ftype</name><value>hanning</value></property>
            <property><name>kappa</name><value>0</value></property>
            <property><name>Debug</name><value>1</value></property>
            <property><name>doConcomitantFieldCorrection</name><value>true</value></property>
            <property><name>NoSense</name><value>0</value></property>
        </gadget>

        <gadget>
            <name>ImageArraySplit</name>
            <dll>gadgetron_mricore</dll>
            <classname>ImageArraySplitGadget</classname>
        </gadget>

        <gadget>
            <name>ComplexToFloatAttrib</name>
            <dll>gadgetron_mricore</dll>
            <classname>ComplexToFloatGadget</classname>
        </gadget>
        
        <!-- GADGETRON-MATLAB > Send images for Lung Water analysis -->
         <external>
          <execute name="gadgetron.nhlbi.lung_water_pipeline" type="matlab"/> 
           <configuration/>
        </external>
       
        <!-- NHLBI GADGETRON TOOLBOX -->
        <gadget>
            <name>scalingGadget</name>
            <dll>nhlbi_gt_toolbox</dll>
            <classname>scalingGadget</classname>
            <property><name>scaling</name><value>1</value></property>
        </gadget>

        <gadget>
            <name>FloatToShort</name>
            <dll>gadgetron_mricore</dll>
            <classname>FloatToUShortGadget</classname>
        </gadget>

        <gadget>
            <name>ImageFinish</name>
            <dll>gadgetron_mricore</dll>
            <classname>ImageFinishGadget</classname>
        </gadget>
        
    </stream>
</configuration>