Feature/ccpp #186

lgannoaa · 2020-11-12T19:29:50Z

No description provided.

* add changes needed to run CCPP version of NEMSFV3GFS -- add convective variables, imfdeepcnv and imfshalcnv, to config.base.emc.dyn -- define suite definition file (CCPP_SUITE) in config.fcst -- copy suite definition file to run directory -- add ccpp_suite variable to atmos_model_nml portion of namelist NOTE: this assumes sorc/fv3gfs.fd is pointing to the CCPP version of NEMSFV3GFS

Squashed commit of the following: commit f0c7afe Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jul 16 18:23:31 2019 +0000 VLab Issues #66082 - GFSv15.1.2 nwprod changes commit 1652d22 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 8 17:22:26 2019 +0000 VLab Issue #65754 - merge final GFSv15.1.1 into master commit 6ca5556 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jun 11 13:24:26 2019 +0000 VLab Issue #64845 - update UFS_utils to v1.0.0 tag commit ad03fe5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jun 10 16:00:47 2019 +0000 VLab issue #64274 - missing ozinfo files in checkout.sh added commit 18341fc Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jun 7 14:20:35 2019 +0000 Patch missing lowres fix file, disable vrfy jobs from first helf cycle and clean up extra files commit d919db6 Author: lin.gan <lin.gan@noaa.gov> Date: Wed May 22 14:33:59 2019 +0000 VLab Issue #64141 Merge ufs_utils into master commit 2acb5d3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed May 15 15:42:03 2019 +0000 VLab Issue #58894 - SLURM updates for free-forecast mode commit 475967b Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri May 10 19:36:13 2019 +0000 VLab Issue #58894 - changes for SLURM on R&D machines commit 8619f47 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Apr 23 19:29:54 2019 +0000 update link_fv3gfs.sh to add correct directory paths for making soft links of post and wafs source directories commit 839a816 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Apr 22 21:45:54 2019 +0000 script update per NCO's request; add track files to archive list commit 8250561 Merge: a1af4f8 0749708 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 17 00:01:27 2019 -0400 Merge branch 'master' of gerrit:global-workflow commit a1af4f8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 17 00:00:51 2019 -0400 redefine SIGLEVEL in ush/global_chgres_driver.sh to allow it to be sent in from parent driver script commit 0749708 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Apr 16 20:01:29 2019 +0000 Vlab issue #40471. Add new parallel version of chgres based on ESMF regridding. Contains the same surface pressure adjustment, vertical interpolation and surface initialization as the serial version of chgres. Can ingest tiled FV3 data, FV3 nemsio data, GFS nemsio data, GFS sigio/sfcio data. Squashed commit of the following: commit c656e6279e2c5d715f3403f47a8be3398e3932a7 Merge: b400492 04f0e75 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Apr 16 19:57:42 2019 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit b400492d4910154a60e73d681b920956502b6a2e Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Apr 16 19:56:51 2019 +0000 chgres_cube branch: This commit references #40471. Move chgres_cube program to the sorc directory under chgres_cube.fd. Change-Id: I49f02aca17e79d262fd353f66293f3ebe4644b8b commit cc1c409c2aae9347546e15e1b40b0af1ed6ab61f Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Apr 3 13:30:46 2019 +0000 chgres_cube branch: This commit references #40471. Add threads to routine VINTG. Add OMP_STACKSIZE variable to Cray run script. Change-Id: Ibb3d10256d367c7a4520b0feeeba0e9d1a207141 commit 8fe3c48409c437be71f4fb4bd87e0b09f70c53b5 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Apr 2 17:37:18 2019 +0000 chgres_cube branch: This commit references #40471. Fix bug in search routine by checking original field (stored in field_save) instead of the adjusted field. Add sea ice default logic from original serial version of chgres. Both updates change results. Add threading to search routine. Change-Id: I46278241828a9020851530594d75e3362712353f commit 0ba7dcff2c14128a0792c30a5585a3d5da0754f5 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Mar 7 18:42:25 2019 +0000 chgres_cube branch: This commit references #40471. Update Theia config files and run scripts for new paths. Change-Id: Ic244b4eabff9ac5c4ebe6e23f6e7845af65799e2 commit ccc1c1e541d27c4334f57ce731c92009b25fefb3 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Mar 7 18:35:05 2019 +0000 chgres_cube branch: This commit references #40471. Add new Theia config file for running with spectral gfs sigio/sfcio files. Change-Id: Ice67f73de40b82943ed6469f7a4f7f7477d669ff commit 614113255549be1c9abfc6acc5e8e0cb04dd1201 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Mar 7 14:40:12 2019 +0000 chgres_cube branch: This commit references #40471. Updates for compiling and running on Cray. Remove compilation option for WCOSS phase 1/2. Machine will be retired this year. Change-Id: I7a9d2c0e5c6e6b63908798eda829c443f80c1648 commit 3e02203853376d1f0504ad618934b8c0adebc660 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Mar 6 21:31:08 2019 +0000 chgres_cube branch: This commit references #40471. Update paths in Dell config files. Change-Id: I6b82400ec53cdce2602c08a59059848b9adc8dd4 commit 595919780c34ae1f0798b62131be37cab26204ea Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Mar 6 16:33:01 2019 +0000 chgres_cube branch: This commit references #40471. Numerous updates so program can ingest/process spectral gfs data in the 'old' sigio/sfcio format. Correct units error when reading snow depth from fv3 tiled warm restart files and fv3 tiled history files. Program expects snow depth in millimeters. Change-Id: I332468857c20e48c645b038469db3848fafd3a37 commit 778af6b5eae7c728dd4598736bf88ac43f98cddd Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Feb 20 13:26:21 2019 +0000 Revert "chgres_cube for warm restart" This reverts commit 00c978c1c119850ec7de6d4dcc3426567717ecea. commit 2f920bd440216524adc211b1850784b6ab0293ee Merge: 257f8aa 00c978c Author: Scott <scott.gregory@noaa.gov> Date: Tue Feb 19 20:51:52 2019 +0000 Merge branch 'chgres_cube_warm_restart' into chgres_cube commit 00c978c1c119850ec7de6d4dcc3426567717ecea Author: Scott <scott.gregory@noaa.gov> Date: Tue Feb 19 20:49:39 2019 +0000 chgres_cube for warm restart commit 257f8aa7e6386f860db5d74697fbd9daf0e2e67f Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Feb 13 15:56:14 2019 +0000 chgres_cube branch: This commit references #40471. When using fv3 global gaussian nemsio files, convert snow depth to millimeters and roughness length to centimeters to be consistent with the fv3 tiled history and restart files. Change-Id: I721f8fd38f0dbe528883af1cd3d62808345930d0 commit d8256f42759b509a05e685cb81dfdba73eb0d939 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Feb 13 15:09:58 2019 +0000 chgres_cube branch: This commit references #40471. New option to process spectral gfs gaussian nemsio files. Change-Id: Ie387df4daa40c770d6adbd2fcc46e8ada3889d49 commit 65e5949113e79c9c875ffcce3d9b8e6f3038dc26 Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Feb 11 18:51:47 2019 +0000 chgres_cube branch: This commit references #40471. Add script for running on Theia using slurm. Change-Id: I66ed45f8389cd4887db763317186c773aaba95e4 commit 448d6bd1b9378bfd9d01e59db6df38913d1ab1c9 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Feb 8 20:02:43 2019 +0000 chgres_cube branch: This commit references #40471. static_data.F90 - Updates for new gridgen_sfc file naming convention. Change-Id: I386f9a0f7ae2bc443634420b64abd8a7017d1b27 commit 0d76a9d7c1c3dfda78c5e4269407dab08a0ec697 Merge: ba27618 cc32f99 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jan 25 19:15:35 2019 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit ba276186b9113cb0e3adbe71475300c4c1738d9a Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Nov 16 22:08:02 2018 +0000 chgres_cube branch: This commit references #40471. Update theia config files for tracers. Change-Id: Ibcafbc82dc4c6fff58b56cfa163d101abd66cdb5 commit bc7b201febc3613f0c4e5c394f54117147b0f768 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Nov 16 21:14:25 2018 +0000 chgres_cube branch: This commit references #40471. Update Dell config files to include tracers. Change-Id: Ie30bb81dd10811e16d39e9e919b1c32590e20b8e commit 3375b682269240d05ede7c568d12ac5e13d2d4a3 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Nov 16 19:39:47 2018 +0000 chgres_cube branch: This commit references #40471. Add namelist option for users to select which tracers to process. Update cray config files accordingly. Change-Id: Ibeffdb44ab550ab3f5514bca2153a35bb5dc9051 commit d9d4408e4949871de57a4b956312b55c64c1afd7 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Nov 16 18:10:56 2018 +0000 chgres_cube branch: This commit references #40471. Numerous updates so the program can process a user-selected set of tracers at run time. Change-Id: I8679b5a327f457fb745927dfc7ca11926a2258ce commit 9b9c92d87aec005c23d22a1b416cf86d3bd9d297 Author: George Gayno <george.gayno@noaa.gov> Date: Tue Oct 30 17:43:16 2018 +0000 chgres_cube branch: This commit references #40471. Minor fix to two error messages. Change-Id: I423986d9ab7f62c4da79850d3352c5f0b2190fb2 commit 0b889ad6328ef0beb7a83feb57563e8e9856b895 Author: George Gayno <george.gayno@noaa.gov> Date: Tue Oct 30 12:26:30 2018 +0000 chgres_cube branch: This commit references #40471. Remove hardwired atm/surface files names in routine "define_input_grid_gaussian". Improve error handling in that routine. Change-Id: I18d894792a44ae4b101891d7155a397b8f5959cd commit 092bc27ffdd37562ccd91372cfaff91c79f5794a Author: George Gayno <george.gayno@noaa.gov> Date: Thu Oct 25 15:00:19 2018 +0000 chgres_cube branch: This commit references #40471. Horizontally interpolate surface pressure assuming a standard lapse rate (per recommentation of Phil Pegion). This reduces model initialization shock near steep terrain. Change-Id: I9748acde579605a76fc387124c11c31c7dfa4474 commit eebdf594c1792330fde03239d068accd72576df6 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Oct 9 20:16:20 2018 +0000 chgres_cube branch: This commit references #40471. Standardize error handling. Change-Id: I861798e99b3d1c7c116e184dc04e3fc782de8347 commit d07ec3468703143b6ca1880cec8b9d78dfe34dba Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Oct 5 17:14:15 2018 +0000 chgres_cube branch: This commit references #40471. Add a basic prolog to the top of each module. Change-Id: I47741d78197c2f8f8153ef6256235bae896981b6 commit 780029c6a6d0d3ec628e6d85cceb480840b2968b Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Oct 4 16:33:46 2018 +0000 chgres_cube branch: This commit references #40471. Cleanup of variable declarations. General cleanup. Change-Id: I978c4d6162aa1eaad7efd8523518bc05f394e690 commit 9dbeb5a4bf20d7580717b41bf17d875ff27dd18c Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Oct 3 13:48:42 2018 +0000 chgres_cube branch: This commit references #40471. Add global attribute to atmospheric and boundary files that specifies which input data source was used. Update theia config files to explictly define all input source files. Change-Id: Ifdcc176db26c7070a1ff550d2aed78b2fdde096e commit 9626a74d9dfe55a9df514eff83121a028963df3f Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Oct 2 18:11:48 2018 +0000 chgres_cube branch: This commit references #40471. Remove hard-wired sfc/nsst input file names. Update config files for cray accordingly. Change-Id: I5bbac6304f375635d9e5ff5620a883917c06eb5c commit bfd4c4e4e04aa19b5d6eb1a163231def60c26e65 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Oct 2 16:56:03 2018 +0000 chgres_cube branch: This commit references #40471. Remove hard-wired input grid atmospheric file names. Update Dell config files accordingly. Change-Id: I6f6cbec751acea32d516e0a67f4dafe97cd99c2c commit 1727ae775e2da4c3de1a1fff2a453dcd30e4273d Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 28 19:28:52 2018 +0000 chgres_cube branch: This commit references #40471. Add comments to input_data.F90 Change-Id: Ic22435948bcdca68840aad989c3b942948880525 commit 3eb8afaf720af694793e3fb25eb062afb7da6017 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 28 13:57:20 2018 +0000 chgres_cube branch: This commit referenes #40471. Updates for compiling and running on Cray. Point to beta v8.0.0 of the esmf library. Change-Id: I2ec308278481c9fa9758af3db8d7ef031b779644 commit 58e0e214e4be5d8d40a3cc6a3e813fe80f8f4aeb Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Sep 27 19:45:32 2018 +0000 chgres_cube branch: This commit references #40471. Updates for compiling on Dell using a local copy of beta v8.0.0 of esmf. Change-Id: I21c367827f5a8788db8de635ea283f536a3fbdd0 commit 0631e3830b65854229fac8dccc148b13279cbac8 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Sep 27 15:06:19 2018 +0000 chgres_cube branch: This commit references #40471. Update Theia build to use esmf beta v8.0.0. That version corrects a problem with FieldScatter and FieldGather for large array sizes (such as 3-d t1534 fields). Add extrapolation method NEAREST_STOD to the atmospheric call to RegridStore. That eliminates problems with unmapped points encountered for certain grid configurations (Ex: T1543 gaussian to C1152). New routine "read_input_atm_gaussian_file" for reading fv3gfs gaussian history files in nemsio format. Remove obsolete namelist entries from all run config files. Change-Id: Ibf12ec0102e621cf94761548075f982d765c5f6e commit 07160a501362413ca83698bedcba97c6e9a642bd Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Sep 25 17:33:24 2018 +0000 chgres_cube branch: This commit references #40471. Replace logical 'restart_file' - which determined whether the program was to ingest tiled history or restart files - with 'input_type'. The latter is set as 'history'/'restart'/'gaussian' for tiled history/tiled restart/gaussian history files. Add routine (read_input_nst_gausian_file) to read nst data from gaussian history file to input_data.F90. Change-Id: I577ba3f319d2c0ea1d99598cf55cc8147bcadb97 commit 7cf64d52594e8e30338cd1f8bae424b81289125a Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Sep 24 13:32:47 2018 +0000 chgres_cube branch: This commit references #40471. Updates for running on Cray. Change-Id: Ib4e42021fd31619c4d60064cf0320cfdbd587414 commit 68be11f25c06eab4eb70f0573bddb67a8601b0fa Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Sep 24 12:40:57 2018 +0000 chgres_cube branch: This commit references #40471. Move read of terrain from model_grid.F90 to input_data.F90. This allows the program to use the terrain from the atmospheric files when processing the atmospheric fields. This terrain should be more consistent with the atm fields than what is in the orog files. This change will also improve flexibility as the number of input data sources increases. For example, the gaussian data has no orog files, so terrain must be read in from the restart files. Change-Id: Iff532b85096ec48afd3ca7e1658ab66c86737dc5 commit a3c5fc0edabe9d02ce3b69d22c136bb71ca44e0f Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 21 13:23:31 2018 +0000 chgres_cube branch: This commit references #40471. input_data.F90 - Place 2-d to 3-d wind conversion in its own routine. Change-Id: Iad7c8460fbcbc9e9d4cbbd2c5529331c9604ebda commit d8b8c675e1e9ab386eb7cc5058e2f7e6f368304b Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 21 12:16:01 2018 +0000 chgres_cube branch: This commit references #40471. Change variable name 'levp_input' to 'levp1_input'. Change-Id: Iaa91b691d8747b6906ecd10ddb0f61d40855d5e7 commit d9382ae01c4b0289047c6390a1c234d6ef8fb7e1 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Sep 18 17:51:43 2018 +0000 chgres_cube branch: This commit references #40471. Logic to process surface fields from an fv3 gaussian nemsio file. Change-Id: I486960805c2c8dd4020438aba11ed8504fac3739 commit 253834853c3c5e0e76257c9402135bfe0de64c9f Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 14 19:31:02 2018 +0000 chgres_cube branch: This commit references #40471. Add some logic to ingest fv3gfs gaussian nemsio files. Currently, only tiled netcdf files may be ingested. Change-Id: Ibc8606fcb63f9c955e636e0200bc8b634155b559 commit 754e2f8161b60a0b7c8bea1f3c58a07afbbcc65d Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 7 20:40:48 2018 +0000 chgres_cube branch: This commit references #40471. Add script and sample configuration files for running on Dell. Change-Id: I6999f9a9ad43b4d62d72e181c431e85dbd48899c commit fa7d51a9795f0e85ece97655434233b2f3433ac0 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Sep 7 14:48:24 2018 +0000 chgres_cube branch: This commit references #40471. Update regional boundary condition logic to include a blending halo located within the computational grid. Halo indices are now defined with respect to the computation grid instead of the whole grid (computational plus lateral halo). Change-Id: I4429659172403c135c16df530e592a80e7912eab commit 94d1f288ab2994f851862338e06625c96aaa915a Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Sep 4 13:48:36 2018 +0000 chgres_cube branch: This commit references #40471. Update atmospheric write routine to write each tile on its own mpi task. Previously, all tiles were written sequentially on task 0. Change-Id: Ica45f3320970c105f2cda42f1becd83a311f784e commit d18199b2bd07a22976fd04181cda179990a5bebd Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Aug 31 18:42:02 2018 +0000 chgres_cube branch: This commit references #40471. Remove all 'goto' statements. Change-Id: I3a66a5254df2d3e5f3cb6bf12f44d96ead3b9f96 commit 17863752b96a772ee5cd6bfd9c96b904a77f95f5 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Aug 31 14:40:24 2018 +0000 chgres_cube branch: This commit references #40471. Read input history file tiles in parallel instead of sequentially. Change-Id: Ifa29876014fe516249c788d3f2f81f543ffda171 commit 9cba10d151de587b6b63644f77bf74b073cb16c8 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Aug 30 20:22:06 2018 +0000 chgres_cube branch: This commit references #40471. Update routine "read_input_atm_restart_data" to read each tile on its own mpi task (or pet). Previously, each file was read sequentially on task 0. Tests on theia showed results do not change, and wall clock time is reduced. Change-Id: I30899db560be58586871dc886283f0766957bef3 commit 4a59accf411686b26128d93e34ad63d9892facff Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Aug 29 20:06:44 2018 +0000 chgres_cube branch: This commit references #40471. Add config files for running the following transforms on Theia: (1) C768 L64 to C768 L91; (2) C768 L64 to C1152 L91 Both transforms ran sucessfully. Remove some diagnostic print. Change-Id: I698d92a016010ad9bc01171ecfe015802275b2ee commit fd3736a88cf1913ce6f9896f734be819f354d9f3 Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Aug 15 15:27:16 2018 +0000 chgres_cube branch: This commit references #40471. Add option to read in a weight file for part of the atmospheric interpolation. If weight file not available, then FieldRegridStore is called as before. Using weight file reduces wall clock time slightly and does not change results. Change-Id: I956bb094315f723840c62a7ee3dd2faeadba70c1 commit f3bb2e3ed2d77e53c6da98c6241c62491316d88f Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Aug 14 18:39:15 2018 +0000 chgres_cube branch: This commit references #40471. Remove extra calls to FieldRegridStore. Results do not change. Wall clock time reduced slightly. Change-Id: Icc93054d844752c5299bdc64c4c117c291b86a09 commit fbb566f9143d1b3a686f351d95352d1de4a9489e Author: George Gayno <George.Gayno@noaa.gov> Date: Mon Aug 6 20:28:20 2018 +0000 chgres_cube branch: This commit references #40471. Remove subroutine 'flip' and replace with F90 statements to reverse arrays in 'z' direction . The latter is much faster. Change-Id: I1a405cc48c7e1981c908e64c77e0d65e0e875caa commit 963246d6061c4dd49001cc226e9df082931b5037 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Aug 3 20:12:02 2018 +0000 chgres_cube branch: This commit references #40471. Add two new tests for Theia. Change-Id: I2fbb5a33ca236bf289eb643b0d361b1fe46b3419 commit 339b732caad6aa3c19fc0c533799d90978b3b16c Author: George Gayno <george.gayno@noaa.gov> Date: Fri Jun 22 19:20:19 2018 +0000 chgres_cube branch: This commit references #40471. Update 'make.sh' to build on WCOSS Phase 1/2. Change-Id: I9f6e0fd0154c2874be61af85a8e6b16946f70704 commit cbbb9644a5ef56acecd2cfc03e805414e5e67035 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Jun 20 20:14:32 2018 +0000 chgres_cube branch: This commit references #40471. Add 3-d temperature and delta-p to target grid atmospheric netcdf file. Change-Id: I505df46a097c772b2cb0c792e18a0db66f9d0d20 commit dcaaba32b355e93720331fe5c0a3ee17d2c64d60 Merge: d868f97 eb1a299 Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jun 15 13:36:09 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit d868f9737108d583451971bd7f7ac66d9792244a Author: George Gayno <George.Gayno@noaa.gov> Date: Fri Jun 15 13:32:07 2018 +0000 chgres_cube branch: This commit references #40471. When ingesting 'restart' files, get model top pressure from the "fv_core.res.nc" file. Change-Id: Ib9856ceb7743ce8c9be6692128e4616c1c7d4e76 commit bce294fc9b507cdaacdda89af652fda786746d49 Author: George Gayno <George.Gayno@noaa.gov> Date: Thu Jun 14 17:59:41 2018 +0000 chgres_cube branch: This commit references #40471. New namelist variable 'restart_file' to control whether input files are 'restart' or 'history' files. Change-Id: I969651711fa83c038574093447a7b8d4c05c41ba commit 73ddc22b528362edc7b5f5a05de94301bc00e9ba Author: George Gayno <George.Gayno@noaa.gov> Date: Wed Jun 13 21:27:21 2018 +0000 chgres_cube branch: This commit references #40471. Add logic to process GFDL microphysics tracers. Change-Id: Iad9e15cc6477ecfc01120400826c0cf6e660a1ce commit 2a82e038a21fc6de82189362133d92a329ad101f Author: George <George.Gayno@noaa.gov> Date: Mon Jun 11 19:09:45 2018 +0000 chgres_cube branch: This commit references #40471. Update "make.sh" for building on Dell. Change-Id: Iba4915467e315ebc83d4fed7e838391681a84a5f commit 9f9d9531ae37ca81608892b50d390d5c3513ce1d Author: George <George.Gayno@noaa.gov> Date: Fri Jun 8 20:22:51 2018 +0000 chgres_cube branch: This commit references #40471. Preliminary modifications to read input atmospheric fields from 'restart' files. Currently, program only ingests atmospheric 'history' files. Change-Id: Iac0d3cf7672d108653ddb9da620b8cf68b361877 commit 94658f59fbb7d9d21bf773d1f8cd0a71dc485e92 Author: George <George.Gayno@noaa.gov> Date: Thu Jun 7 20:57:44 2018 +0000 chgres_cube branch: This commit references #40471. Update to ingest tiled "restart" surface files. Previously, only tiled "history" files could be ingested. 1) New routine to read tiled restart surface files - "read_input_sfc_restart_data" 2) Rename existing read routine to "read_input_sfc_history_data". 3) Add logic to determine if surface file is a 'restart' or 'history' file. Logic checks for 'xaxis_1' in the header. If it exists, a 'restart' file is assumed. Change-Id: I0ab138d165d7f2646440acc07ee5691c726a1e85 commit 822ccffc37ee4f81398ebfdcfbbad8e39d946149 Author: George Gayno <george.gayno@noaa.gov> Date: Mon May 21 18:09:17 2018 +0000 chgres_cube branch: This commit references #40471. New routine "write_fv3_atm_bndy_data_netcdf" that outputs an atmospheric lateral boundary file. Supports stand-alone regional grids. Change-Id: Ic6a63a4d915ba7fd870e9c151ff274f90df0a059 commit d11d7cd2d534a3ea2756928a00423d7ca5c68236 Author: George <George.Gayno@noaa.gov> Date: Wed May 16 20:47:04 2018 +0000 chgres_cube branch: This commit references #40471. Add "extrapMethod" argument to atmospheric regridding. This prevents a random glitch when interpolating winds from the center of the grid box to the box edges. Add halo removal logic for atmospheric file. Fix bug in halo removal logic for surface file. Change-Id: Idbee39ded541db7cb11dadc4b488759a736ce7b4 commit 325b729346b4303d2c2d142d6685ae5cb2e5b167 Merge: 3e46722 cebba5c Author: George <George.Gayno@noaa.gov> Date: Fri May 11 14:21:49 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 3e467223e7ce3d23b3e0a8a8f47d5e233fa3c69a Merge: 00921a5 ac03c87 Author: George Gayno <george.gayno@noaa.gov> Date: Thu May 3 19:55:50 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 00921a50e7c7dffe3bc0194e1a9b93fcbf87cde5 Author: George Gayno <george.gayno@noaa.gov> Date: Mon Apr 30 17:33:17 2018 +0000 chgres_cube branch: This commit references #40471. Update to use v7.1 of ESMF instead of a beta snapshot. modified: chgres_cube/sorc/make.sh Change-Id: I0fc15198c3abb2c28ee758df8dc37bd3c008924c commit 930b87fd892009906db444e44fefd602248d883e Author: George Gayno <george.gayno@noaa.gov> Date: Tue Apr 24 13:55:34 2018 +0000 chgres_cube branch: This commit references #40471. New routine "write_fv3_atm_header_netcdf" to write the "gfs_ctrl.nc" header file, which contains tracer and vcoord information. Modify to read input surface data from tiled model history files. Change-Id: I39f0d573c2cae3b17f4758973d7bf002dcd7afbf commit 937997b65ee77b09ac69151db9388f0c107d38b7 Merge: ca61546 0e9d2d1 Author: George Gayno <george.gayno@noaa.gov> Date: Fri Apr 20 17:36:18 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit ca61546139daa5e51a409fa6a538503c10dd5742 Author: George Gayno <george.gayno@noaa.gov> Date: Fri Apr 13 13:32:40 2018 +0000 chgres_cube branch: This commit references #40471. New routine 'vintg' for vertically interpolating between the input and target hyb-sigma levels. This routine is taken from the GFS CHGRES code, which assumes the lowest model level in index '1'. This is opposite the fv3 convention. Therefore, add a vertical 'flip' of the fv3 data after the read and before the write of the atmospheric files. New routine 'compute_zh' to compute heights. To save memory, reduce the number of 3-d arrays during write of atmospheric file. Change-Id: Ia256b6d348d277119ab1e23da6d00f3653dd8eeb commit 6c95bf7246b74edef319814a13f3667b1cdcb6d7 Author: George <George.Gayno@noaa.gov> Date: Mon Apr 9 20:52:51 2018 +0000 chgres_cube branch: This commit references #40471. New routine 'newpr1' which computes 3-d pressure based on 'ak' and 'bk'. Add esmf fields to hold data on target grid before vertical interpolation (denoted by 'b4adj' in the variable name). Change-Id: Ic9c9175f268f124c0d63498a9e771fe679456782 commit 4c5b40a11daf499c55f9000224c08dc3589d7d98 Merge: ebee537 6482117 Author: George <George.Gayno@noaa.gov> Date: Mon Apr 9 17:36:57 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube. commit ebee53765fe252dec7517d332771ef7a847670cf Author: George <George.Gayno@noaa.gov> Date: Mon Apr 9 17:22:27 2018 +0000 chgres_cube branch: This commit references #40471. Several updates to the atmospheric data processing: 1) Add horizontal interpolation of 3-d temperature. 2) Read input data from the tiled model history files instead of the coldstart files from CHGRES. These files store the winds unstaggered (at the center of the grid box). 3) Add read of target grid 'vcoord' file. 4) New routine 'newps' to adjust surface pressure to new terrain. Change-Id: I653dbc741f785b42ce6fba51333530dd873bd9ef commit 181f712adb0310f098b1f2c1ce2d6b870fd81a0b Author: George <George.Gayno@noaa.gov> Date: Wed Apr 4 14:02:30 2018 +0000 chgres_cube branch: This commit references #40471. Add read of vertical coordinate file to get 'ak' and 'bk' for the target grid. Change-Id: I3ba9fbc8e5205e3c5ef6a04da955d52094197ce9 commit 25c8b572cd74aae0d826ed805ce75b47acad95e8 Merge: 7e00515 7b3afc8 Author: George <George.Gayno@noaa.gov> Date: Tue Apr 3 12:16:15 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 7e00515e2e1069d491f359c1eee9a63f84000732 Merge: c2ff052 8725547 Author: George <George.Gayno@noaa.gov> Date: Tue Mar 27 19:48:54 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit c2ff0525532b1ed078c4e6bb258dd46f85e40ff6 Merge: 8fd71e9 0c7e545 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Mar 22 14:20:13 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 8fd71e907923b2df457d8cb80550e4a0ced1ea2d Author: George Gayno <george.gayno@noaa.gov> Date: Tue Mar 20 18:50:13 2018 +0000 chgres_cube branch: This commit references #40471. Update theia build to point to official esmf version 7.1.0. Add "module use" statement for locating NCEPLIBS. Change-Id: If06900baa3c70b9713a3d15b25d2a89fd569d5a8 commit 5a61108655e8f253fe1cddabc3cc9dd92f2fcf04 Merge: f944749 7fdcd04 Author: George <George.Gayno@noaa.gov> Date: Mon Mar 19 18:18:58 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit f944749861cc6ecfcb8439c38525f42184d2eda1 Merge: a47764d 3169078 Author: George Gayno <george.gayno@noaa.gov> Date: Mon Mar 5 13:45:28 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit a47764d197d896b3aced87a390571ac7b9e3bb9a Merge: 944f618 ecf67b6 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Feb 22 18:24:50 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 944f6180e7500e6238685e8ae51d4d1a68c9f919 Merge: 73c0c43 03b9b56 Author: George <George.Gayno@noaa.gov> Date: Tue Feb 20 13:56:03 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 73c0c436bd431dd2b7bb88e87046d42e69bb1d80 Merge: f697860 6b2de36 Author: George <George.Gayno@noaa.gov> Date: Mon Feb 12 13:36:35 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit f697860ab83ff8bcec2383dbe8d4cee86de1b84c Author: George Gayno <george.gayno@noaa.gov> Date: Thu Feb 8 21:46:24 2018 +0000 chgres_cube branch: This commit references #40471. Minor script changes related to recent master merge. Change-Id: Ibd0d61e3d7da3be6675195d0d8c3b4def38f70d4 commit 5024394887414c4f65e6921419ac8e1550108be7 Merge: 72778cb 2b9a059 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Feb 8 21:33:29 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube Change-Id: Iadb058b872c1d578acf9895a1321923a8bd71c73 commit 72778cb00dac9f97cfdb5a6085025c80cccaee91 Author: George Gayno <george.gayno@noaa.gov> Date: Mon Jan 29 19:32:42 2018 +0000 chgres_cube branch: This commit references #40471. To ensure bit identical results for varying task counts, the following modifications were done: (1) The argument "isrctermprocessing=1" was added to all calls to ESMF_FieldRegridStore; (2) The argument "termorderflag=ESMF_TERMORDER_SRCSEQ" was added to all calls to ESMF_FieldRegrid. Change-Id: I354cbd94b5c9e63a8e5635dfb2a2a32fe91426e3 commit e263d0e6d5fce3f24cd0f15ae849be412fff161f Author: George Gayno <george.gayno@noaa.gov> Date: Mon Jan 8 21:04:00 2018 +0000 chgres_cube branch: This commit references #40471. Move all interpolations of surface fields into their own routine ("interp"). Change-Id: I1c1ffd972566092e17f9850bbfdfce2b3965abe2 commit 574bb6f72998099b7aacc8a15220de2637ba727b Author: George Gayno <george.gayno@noaa.gov> Date: Mon Jan 8 19:33:52 2018 +0000 chgres_cube branch: This commit references #40471. Move processing of nst fields to surface.F90 to ensure consistency between TREF and SST. This was a problem with the OPS version of CHGRES (see issue #44638.). Remove now obsolete routine nst.F90. Change-Id: Ifb7bf631ef75cdf2af8eb0ff3f77e236996224db commit bdb63dd83f7bf23fe198650fc84cc631428d7d6f Author: George Gayno <george.gayno@noaa.gov> Date: Thu Jan 4 19:46:18 2018 +0000 chgres_cube branch: This commit references #40471. Change default value of SST to be the same latitudinal dependent guess as that used for TREF. Change-Id: If2d0f1f13d4f7bb318c11003eb062c53609f1d92 commit 735e35ba6efcafe94db47540416b64578d13bb97 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Jan 4 14:38:19 2018 +0000 chgres_cube branch: This commit references #40471. Simplify driver. General cleanup. Change-Id: I1b227f5f909ec42e4a2a664ccd324df0a2a19da8 commit 8f7e672cdcd40795afa721dbd7f6347ac876ab1f Merge: 9743273 3073c50 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Jan 3 17:29:16 2018 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 9743273c09dfb4b4d8931fb0583198d57274dd23 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Jan 3 17:18:43 2018 +0000 chgres_cube branch: This commit references issue #40471. Add interpolation of u/v winds (on the staggered grid). The method is based on the vector interpolation in the model's write component (by Jun Wang): (1) convert from 2-d cartesian components to 3-d. (2) Horizontally interpolate the 3-d components to the target grid. (3) Convert from the 3-d components back to 2-d. Change-Id: If5110c8c20db8c5ad110f74a9f219e97799705f8 commit 1d90bf06dde893c5f28873fb016f874dc9dfc7e0 Merge: 04e2f1e 7bf492a Author: George Gayno <george.gayno@noaa.gov> Date: Thu Dec 21 19:16:33 2017 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit 04e2f1ec01dd032fd60893d54ba280759737521f Author: George Gayno <george.gayno@noaa.gov> Date: Thu Dec 21 19:12:01 2017 +0000 chgres_cube branch: This commit references #40471. Add read of latitude and longitude at the 's' edge and store as ESMF fields. Lat/lon is required to interpolate the staggered winds. Change-Id: I1f5d2a26522547a8887942b386175f65c6de9767 commit df04cc2fa792e0ed0b271e4bd395a400d80f3993 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Dec 20 20:19:32 2017 +0000 chgres_cube branch: This commit references #40471. Rename routine "get_model_mask" to "get_model_mask_terrain" and remove read of lat/lons from the orography file. New routine "get_model_latlons" to read lat/lon from the 'grid' files. The 'grid' files have lat/lon on the staggered grid, which will be needed when interpolating winds. The orography files only have lat/lon on the 'A' grid. Change-Id: If291bb2f0b1e2294b52e7775347f756cdf68c6c5 commit e76e7f236a520428e35c2d9f79b18dea2fd45fe5 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Dec 20 14:55:19 2017 +0000 chgres_cube branch: This commit references #40471. Switch from ESMF 7.1.0bs39 to 7.1.0bs44 (Theia). Latest version corrects bug in GridCreateMosaic for stand-alone nests. Change-Id: I50b271be7fbfabc14a51f4cc848308c3d8143d70 commit 56de1e7b5c857da69a63fe9473f6e3a4f01e35a4 Author: George Gayno <george.gayno@noaa.gov> Date: Fri Dec 15 18:41:50 2017 +0000 chgres_cube branch: This commit references #40471. Replace all remaining F77 netcdf functions with their F90 counterparts. Change-Id: Ieaea4b5485079b44d3c49e49556b2e2eba56b7f6 commit 23ece3b7d201be3c017d890576bc65c452e5810a Author: George Gayno <george.gayno@noaa.gov> Date: Fri Dec 15 16:02:32 2017 +0000 chgres_cube branch: This commit references #40471. Point (on Theia) to an updated ESMF v7.1.0bs39 library (was recompiled with -precise flag). Update read/write of atmospheric fields to use F90 versions of NetCDF functions. Change-Id: Iccd7b96a91b7d4d498847d00fec7679420852f87 commit 0eb38c145d8935b644ac014e65432a8e93f0f4fc Author: George Gayno <george.gayno@noaa.gov> Date: Thu Dec 14 21:43:47 2017 +0000 chgres_cube branch: This commit references #40471. Update Cray build to use ESFM v7.1.0bs39. Change-Id: I5cc221fb2be80ddfc4e55cae183b64f671b97553 commit 7f6369774f00955df5543c8a61212f59a52c0373 Author: George Gayno <george.gayno@noaa.gov> Date: Thu Dec 14 21:16:02 2017 +0000 chgres_cube branch: This commit references #40471. Update ESMF error handling per Gerhard's suggestion. Change-Id: I29b882c178f6595f8d371d6bddb8b080a00f88d7 commit bb2bccc4832080366bf49d67a1dbaa63881bf189 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Dec 13 21:00:39 2017 +0000 chgres_cube branch: This commit references #40471. Update to use v7.1.0bs39 of the ESMF library, which is only available on Theia currently. Change-Id: I4be45d0dc3e5c9646c6ff52d57b27639665c4b93 commit 1976a12346150a8a6093105089820637f4f5037c Merge: e362248 8585699 Author: George Gayno <george.gayno@noaa.gov> Date: Wed Dec 13 17:23:00 2017 +0000 chgres_cube branch: This commit references #40471. Merge branch 'master' into chgres_cube commit e362248b338582f8c6f75e8ffacf328738a0a30c Author: George Gayno <george.gayno@noaa.gov> Date: Mon Nov 6 15:16:09 2017 +0000 This commit references #40471 Initial commit of the CHGRES cube-to_cube program to the chgres_cube branch. This initial version only processes surface and NSST fields. There are some hooks for processing the atmospheric fields. Change-Id: I33fa9e96637817dbe36e180e98b3b0c5e55b6945 commit 04f0e75 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Apr 12 20:18:54 2019 +0000 remove sourcing ~/.bash_profile in run_gfsmos_master.sh.dell. Otherwise the program crashes on Dell commit 1c4de6b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Apr 8 01:59:58 2019 +0000 for Issue#62220, update earc.sh to not overwrite enkfgdas_grp for the first cycle commit 71af83f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Apr 3 19:38:51 2019 +0000 Merge GFS.v15.1.0 implementation branch q2fy19_nco to the master * Update model tag to nemsfv3gfs_beta_v1.0.18 to add restart capability of running GFS long forecast from the end or a failing point of last attempt. restart_interval_gfs is used to control the frequency of writing out restart ICs, which are saved under ROTDIR for emc parallels and NWGES for NCO production. exglobal_fcst_nemsfv3gfs.sh script has been modified to autimatically detect if the model should execute as a cold, or warm start, or as rerun. If it is a rerun, the script will look for saved ICs that is restart_interval_gfs hours back from the last ending point. * Correct a bug in precip units in the computation of frozen precipitation flag (srflag). * Write fields that are continuously accumulated in model integration in restart files so that after a restart their acummulated values can be read in. (FV3 Issue #61788) * Use 8x24 instead of 12x16 layout in config.fv3 for C768 * Address restart I/O issues #60879 * Update gsi tag to fv3da.v1.0.43 (Q3FY19 GDAS observation upgrade). * Merge NCO's changes to q2fy19_nco branch and then to the master. * Update GFS.v15 release notes. * Replace current ecflow/def file swith NCO's copies. Changes to be committed: renamed: docs/Release_Notes.gfs.v15.0.0.txt -> docs/Release_Notes.gfs.v15.1.0.txt renamed: docs/Release_Notes.gfs_downstream.v15.0.0.txt -> docs/Release_Notes.gfs_downstream.v15.1.0.txt renamed: ecflow/ecf/defs/prod00.def -> ecflow/ecf/defs/para00_gfs_FV3.def renamed: ecflow/ecf/defs/prod06.def -> ecflow/ecf/defs/para06_gfs_FV3.def renamed: ecflow/ecf/defs/prod12.def -> ecflow/ecf/defs/para12_gfs_FV3.def renamed: ecflow/ecf/defs/prod18.def -> ecflow/ecf/defs/para18_gfs_FV3.def new file: ecflow/ecf/defs/para00_gdas_FV3.def new file: ecflow/ecf/defs/para06_gdas_FV3.def new file: ecflow/ecf/defs/para12_gdas_FV3.def new file: ecflow/ecf/defs/para18_gdas_FV3.def modified: driver/product/run_JGFS_AWIPS_G2_dell.sh_00 modified: gempak/ush/gfs_meta_ak.sh modified: gempak/ush/gfs_meta_us.sh modified: jobs/JGFS_AWIPS_G2 modified: jobs/JGLOBAL_FORECAST modified: parm/config/config.base.nco.static modified: parm/config/config.fcst modified: parm/config/config.fv3 modified: parm/config/config.resources modified: scripts/exglobal_fcst_nemsfv3gfs.sh modified: sorc/checkout.sh commit 193f883 Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Mar 12 20:32:47 2019 +0000 Vlab issue #59733. Add interface block for routine "write_fv3_data_netcdf" to the chgres.f90 driver. An interface block is required when optional arguments are used. This routine has one: NSST_OUTPUT. Squashed commit of the following: commit 43af677678427218bfc689450e2a8e893cb81cb2 Merge: 09406ee5 595d44c Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Mar 12 18:25:09 2019 +0000 chgres_wrterr branch: This commit references #59733. Merge branch 'master' into chgres_wrterr commit 09406ee5a6be3eb2e9b96e84f460b0b5b743f9bb Author: George Gayno <George.Gayno@noaa.gov> Date: Tue Feb 5 21:39:25 2019 +0000 chgres_wrterr branch: This commit references #59733. Add interface block for routine "write_fv3_data_netcdf" to the chgres.f90 driver. Change-Id: Ic30af24b2c2704f1915ab93eeffbe0716a462e73 Change-Id: I19516cd1ad77aa62b3b311745ac63be139947fc2

… GSDSuite (GF, MYNN, RUC LSM, Thompson MP) -- change compilation options in build_fv3.sh (assumes CCPP suites suite_FV3_GFS_v15.xml and suite_FV3GFS_GSD_v0.xml) -- change executable name to global_fvgfs_ccpp.x -- add convective variables, imfdeepcnv and imfshalcnv, to config.base.emc.dyn -- add ccpp_suite variable to atmos_model_nml portion of namelist -- created new exglobal forecast scripts with namelist options -- define suite definition file (CCPP_SUITE) in config.fcst -- add new aeroic task to workflow for Thompson microphysics -- modify checkout.sh to add new directory, sorc/aeroconv (read README.md to extract files) -- change nstf_name in namelist from 2,0,0,0,0 to 2,1,1,0,5 (config.nsst settings)

- changed FHCYCLE=0 for RUC LSM in config.base.emc.dyn_GSDsuite

…build for all machines

…ig.fcst, exglobal_fcst_nemsfv3gfs.sh) - moved convective options from config.fcst to config.base - created separate _v15 files

d2f877f - Thu Nov 14 19:34:51 2019

…del repository

- temporary fix for fv3ic.sh for now to create FV3 ICs using FV3GFS nemsio files - moved convective options to config.fcst* files - updated links for diag and field tables for GSD - add CCPP executable to link_fv3gfs.sh

-- GFSv15.2.3 ncep_post tag update -- GFSv15.2.4 change

…et invalid file format error

- add new experiment setup scripts

modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD

…rn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh

WalterKolczynski-NOAA · 2020-11-14T01:14:40Z

@KateFriedman-NOAA requested this PR not be closed, so I am going to reopen it pending a note of approval from her on this PR that it can be closed without being merged.

min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"}

1. use iovr for model after NCAR/ccpp-physics#514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option

…op branch

Pull in the iovr=3 in config.fcst

while getopts "oc" option to while getopts "c" option

Fix missing COMROOT setting for Orion

Adjust efcs walltime and eupd thread value on Orion

KateFriedman-NOAA

Initial round of CCPP changes look good. Tests were run on Orion, Hera, and WCOSS-Dell. Caveat: can't run CCPP with waves on yet, further commit will remedy this.

KateFriedman-NOAA · 2020-11-17T18:31:33Z

This PR will close issue #187 .

…p branch) Squashed commit of the following: commit ef8b641 Merge: fca3433 cffc568 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Mon Jan 4 10:52:08 2021 -0500 Merge pull request NOAA-EMC#231 from yangfanglin/feature/multiple_restart modified exglobal_forecast.sh to enable multiple reruns from breakpoint restart initial conditions commit cffc568 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 30 18:43:34 2020 +0000 modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug. commit fca3433 Merge: a95cce5 abb168b Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Dec 18 09:30:21 2020 -0500 Merge pull request NOAA-EMC#221 from NOAA-EMC/nco_v16_changes NCO changes for v16.0.3 commit abb168b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 19:17:26 2020 +0000 Issue #1 and issue NOAA-EMC#220 - set C192/C96/C48 npe_eobs back to dev values for develop commit 65b4d96 Merge: a95cce5 e89045b Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 18:46:06 2020 +0000 Issue #1 - merge v16.0.3 changes from NCO into develop commit e89045b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 16 16:38:01 2020 +0000 Issue #1 - add grib_util module load to several analysis ecflow scripts commit a95cce5 Merge: 1562bb9 2646921 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 14:05:27 2020 -0500 Merge pull request NOAA-EMC#216 from NOAA-EMC/issue189 Issue NOAA-EMC#189 - update ufs-weather-model hash commit 2646921 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 18:56:33 2020 +0000 Issue NOAA-EMC#189 - update ufs-weather-model hash commit 1562bb9 Merge: f3d11b9 7a9bc00 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 09:51:07 2020 -0500 Merge pull request NOAA-EMC#213 from NOAA-EMC/hotfixes Hotfixes - issues NOAA-EMC#201, 202, 208 commit 7a9bc00 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Dec 14 21:35:58 2020 +0000 Issue NOAA-EMC#201 - workaround for failing post000 job before hpc-stack solution commit 425588f Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 21:06:20 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change commit ec5e2e5 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 15:06:16 2020 +0000 Issue #1 - correct gridded wave parm files for v16.0.3 commit 39246c6 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 11 19:26:51 2020 +0000 Issue #1 - changes from NCO for GFSv16.0.3 commit b9f7de8 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 19:15:00 2020 +0000 Issue #1 - update Externals.cfg with final tags for GFSv16.0.2 commit cff28bd Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 15:59:05 2020 +0000 Fixes for issue NOAA-EMC#202 (FINDDATE) and issue NOAA-EMC#208 (postsnd.sh permissions) commit 7c7482d Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 14:10:25 2020 +0000 Issue #1 - correct permissions on jobs/rocoto/postsnd.sh commit dee856c Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 20:58:20 2020 +0000 Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file commit 0ee264b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 18:49:54 2020 +0000 Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively commit b5d97ab Merge: 6da1a24 be5f9ec Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:49:29 2020 -0500 Merge pull request NOAA-EMC#205 from NOAA-EMC/release/gfsv16.0.0.nco Script alert updates from NCO for wave downstream commit be5f9ec Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 19:45:23 2020 +0000 Script alert updates from NCO for wave downstream commit 6da1a24 Merge: ce1ae97 069f266 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:12:37 2020 -0500 Merge pull request NOAA-EMC#204 from NOAA-EMC/release/gfsv16.0.0.nco GFSv16 NCO changes - early December edition commit 069f266 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 2 20:01:17 2020 +0000 Add override for COMIN_WAV_RTOFS in emc mode for waveprep job commit 194f280 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 30 18:47:19 2020 +0000 Issue NOAA-EMC#197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO). commit d82efa8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 18:06:12 2020 +0000 modified: JGLOBAL_FORECAST commit 25a28c8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 17:02:05 2020 +0000 modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments. commit 7283c7e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 27 22:16:31 2020 +0000 modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters commit e600377 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Nov 24 03:25:23 2020 +0000 modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16 commit bd5294e Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Nov 21 17:32:05 2020 +0000 modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix commit 5a516b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 05:08:33 2020 +0000 modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations commit 759cf33 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 04:51:48 2020 +0000 Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected. use EMC's updated version modified: jobs/JGFS_ATMOS_POSTSND Use NCO's updated version modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: parm/config/config.base.nco.static Updated by both NCO and EMC modified: parm/config/config.wave Updated gldas tag to gldas_gfsv16_release.v1.12.0 modified: sorc/checkout.sh commit f39ea0c Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Nov 19 04:43:17 2020 +0000 create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_calc.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_diag.ecf modified: 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parm/transfer_gfs_misc.list modified: parm/transfer_rdhpcs_gdas.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_1.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_2.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_3.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_4.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_5.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_6.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_7.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_8.list modified: parm/transfer_rdhpcs_gfs.list modified: parm/transfer_rdhpcs_gfs_nawips.list commit ce1ae97 Merge: b096e29 e9d00e4 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Nov 18 16:55:14 2020 -0500 Merge pull request NOAA-EMC#192 from JessicaMeixner-NOAA/bf/waveICfreq wave parm update for realease/gfsv16 commit e9d00e4 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Nov 18 19:51:25 2020 +0000 update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle commit f3d11b9 Merge: e3972f1 32a004a Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 14:01:54 2020 -0500 Merge pull request NOAA-EMC#186 from lgannoaa/feature/ccpp Initial support for CCPP. commit b096e29 Merge: 9fa9ffe 670b97c Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 10:54:07 2020 -0500 Merge pull request NOAA-EMC#173 from JessicaMeixner-NOAA/bugfix/rtofsissues Updates for RTOFS preprocessing for wave model commit 670b97c Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Nov 2 20:46:33 2020 +0000 updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr

Squashed commit of the following: commit ef8b64150a0cb7137b1ec48e9c8f3c7e9b3223de Merge: fca3433b cffc5682 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Mon Jan 4 10:52:08 2021 -0500 Merge pull request #231 from yangfanglin/feature/multiple_restart modified exglobal_forecast.sh to enable multiple reruns from breakpoint restart initial conditions commit cffc5682f34eb9ab0bbf42ee11eaa848152c0dbc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 30 18:43:34 2020 +0000 modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug. commit fca3433bf869b12cade480e1394688d7b6f95687 Merge: a95cce5f abb168bc Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Dec 18 09:30:21 2020 -0500 Merge pull request #221 from NOAA-EMC/nco_v16_changes NCO changes for v16.0.3 commit abb168bc32fdff7b08ce8ecc54ea832aabf03c44 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 19:17:26 2020 +0000 Issue #1 and issue #220 - set C192/C96/C48 npe_eobs back to dev values for develop commit 65b4d965fa6ebee445a509a0593e925ae5d5b513 Merge: a95cce5f e89045b9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 18:46:06 2020 +0000 Issue #1 - merge v16.0.3 changes from NCO into develop commit e89045b9fb1d9026810ef5c77a3554c67c41718e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 16 16:38:01 2020 +0000 Issue #1 - add grib_util module load to several analysis ecflow scripts commit a95cce5f3e123a241000b209fb50cc8911d13466 Merge: 1562bb97 2646921d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 14:05:27 2020 -0500 Merge pull request #216 from NOAA-EMC/issue189 Issue #189 - update ufs-weather-model hash commit 2646921d0da6dc8a136ebeba6cceceacf3806c23 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 18:56:33 2020 +0000 Issue #189 - update ufs-weather-model hash commit 1562bb97ac21ce2406ed21f76b7c8d58cecf4a2a Merge: f3d11b9b 7a9bc00e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 09:51:07 2020 -0500 Merge pull request #213 from NOAA-EMC/hotfixes Hotfixes - issues #201, 202, 208 commit 7a9bc00e367126044f83b0fc9b737386788899a9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Dec 14 21:35:58 2020 +0000 Issue #201 - workaround for failing post000 job before hpc-stack solution commit 425588f711812819744c8060a46444b9d4bf2b63 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 21:06:20 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change commit ec5e2e5dd98d80ca3e3d696d5eb19a5a4180c87b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 15:06:16 2020 +0000 Issue #1 - correct gridded wave parm files for v16.0.3 commit 39246c6e1604e9e81ddc384c951861c43e30cdcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 11 19:26:51 2020 +0000 Issue #1 - changes from NCO for GFSv16.0.3 commit b9f7de8af3cb966fa756e38feaf98ce1f84ee2f3 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 19:15:00 2020 +0000 Issue #1 - update Externals.cfg with final tags for GFSv16.0.2 commit cff28bdbf0daa6980766a011f73e2a021aee2341 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 15:59:05 2020 +0000 Fixes for issue #202 (FINDDATE) and issue #208 (postsnd.sh permissions) commit 7c7482de947ae686b619fc72e7dd192410b7e0f7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 14:10:25 2020 +0000 Issue #1 - correct permissions on jobs/rocoto/postsnd.sh commit dee856c5b54c19cc9de6898908fdb9d4f8d99baa Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 20:58:20 2020 +0000 Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file commit 0ee264bef7ea71d32426b6b6d77109e73b4235ff Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 18:49:54 2020 +0000 Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively commit b5d97ab6912596d3b343843ba3ef6e8c5f71a21a Merge: 6da1a24b be5f9ece Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:49:29 2020 -0500 Merge pull request #205 from NOAA-EMC/release/gfsv16.0.0.nco Script alert updates from NCO for wave downstream commit be5f9ece8329ee6b18af92d044809f018404669b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 19:45:23 2020 +0000 Script alert updates from NCO for wave downstream commit 6da1a24ba89c80ee5f5df38136d03483207d39dd Merge: ce1ae970 069f2662 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:12:37 2020 -0500 Merge pull request #204 from NOAA-EMC/release/gfsv16.0.0.nco GFSv16 NCO changes - early December edition commit 069f2662bc2eabc822f13eec4e2f69f1c39606a8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 2 20:01:17 2020 +0000 Add override for COMIN_WAV_RTOFS in emc mode for waveprep job commit 194f280cf7351d58b0295af35c91e74ac6925d0b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 30 18:47:19 2020 +0000 Issue #197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO). commit d82efa8417fe6247ed08cd74a447460ba6bb51f9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 18:06:12 2020 +0000 modified: JGLOBAL_FORECAST commit 25a28c8dacc8659071eca65be15fb4de08b18d80 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 17:02:05 2020 +0000 modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments. commit 7283c7e60c98639c6466ce5903ab03c36a7f5f57 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 27 22:16:31 2020 +0000 modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters commit e6003773c0af51bd15eb2bdb6831c99dcce1cc5b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Nov 24 03:25:23 2020 +0000 modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16 commit bd5294ee6844f8a5adbd04eae78999068c0961a2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Nov 21 17:32:05 2020 +0000 modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix commit 5a516b4cdf0333e4b8316c8cbda7be9f9dccc543 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 05:08:33 2020 +0000 modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations commit 759cf3341bb400d3b3254a05a624e3ab671ef6cd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 04:51:48 2020 +0000 Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected. use EMC's updated version modified: jobs/JGFS_ATMOS_POSTSND Use NCO's updated version modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: parm/config/config.base.nco.static Updated by both NCO and EMC modified: parm/config/config.wave Updated gldas tag to gldas_gfsv16_release.v1.12.0 modified: sorc/checkout.sh commit f39ea0cbbabaa5e69e03cec4db309e2adfb33756 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Nov 19 04:43:17 2020 +0000 create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf modified: 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ecflow/ecf/scripts/gfs/wave/post/jgfs_wave_prdgen_bulls.ecf modified: ecflow/ecf/scripts/gfs/wave/post/jgfs_wave_prdgen_gridded.ecf modified: ecflow/ecf/scripts/gfs/wave/prep/jgfs_wave_prep.ecf modified: jobs/JGFS_ATMOS_POSTSND modified: jobs/JGLOBAL_ATMOS_EMCSFC_SFC_PREP modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_INIT modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: jobs/JGLOBAL_WAVE_PREP modified: parm/config/config.wave modified: parm/transfer_gdas_1a.list modified: parm/transfer_gdas_1b.list modified: parm/transfer_gdas_1c.list modified: parm/transfer_gdas_enkf_enkf_05.list modified: parm/transfer_gdas_enkf_enkf_10.list modified: parm/transfer_gdas_enkf_enkf_15.list modified: parm/transfer_gdas_enkf_enkf_20.list modified: parm/transfer_gdas_enkf_enkf_25.list modified: parm/transfer_gdas_enkf_enkf_30.list modified: parm/transfer_gdas_enkf_enkf_35.list modified: parm/transfer_gdas_enkf_enkf_40.list modified: parm/transfer_gdas_enkf_enkf_45.list modified: parm/transfer_gdas_enkf_enkf_50.list modified: parm/transfer_gdas_enkf_enkf_55.list modified: parm/transfer_gdas_enkf_enkf_60.list modified: parm/transfer_gdas_enkf_enkf_65.list modified: parm/transfer_gdas_enkf_enkf_70.list modified: parm/transfer_gdas_enkf_enkf_75.list modified: parm/transfer_gdas_enkf_enkf_80.list modified: parm/transfer_gdas_enkf_enkf_misc.list modified: parm/transfer_gdas_misc.list modified: parm/transfer_gfs_1.list modified: parm/transfer_gfs_10a.list modified: parm/transfer_gfs_10b.list modified: parm/transfer_gfs_2.list modified: parm/transfer_gfs_3.list modified: parm/transfer_gfs_4.list modified: parm/transfer_gfs_5.list modified: parm/transfer_gfs_6.list modified: parm/transfer_gfs_7.list modified: parm/transfer_gfs_8.list modified: parm/transfer_gfs_9a.list modified: parm/transfer_gfs_9b.list modified: parm/transfer_gfs_misc.list modified: parm/transfer_rdhpcs_gdas.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_1.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_2.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_3.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_4.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_5.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_6.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_7.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_8.list modified: parm/transfer_rdhpcs_gfs.list modified: parm/transfer_rdhpcs_gfs_nawips.list commit ce1ae9709fe506f32833910f3cf4f68117c7d0f2 Merge: b096e294 e9d00e41 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Nov 18 16:55:14 2020 -0500 Merge pull request #192 from JessicaMeixner-NOAA/bf/waveICfreq wave parm update for realease/gfsv16 commit e9d00e41e939fca68a39293b973326531f3c6983 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Nov 18 19:51:25 2020 +0000 update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle commit f3d11b9bc7e669f4c11266654649c4d5e28f16a9 Merge: e3972f17 32a004aa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 14:01:54 2020 -0500 Merge pull request #186 from lgannoaa/feature/ccpp Initial support for CCPP. commit 32a004aae3949e8fd3bda7a4f628995317d33f47 Merge: 66cc1a06 036cc113 Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Tue Nov 17 13:15:37 2020 -0500 Merge pull request #2 from KateFriedman-NOAA/ccpp Adjust efcs walltime and eupd thread value on Orion commit 036cc113dcd5787ce4bccfb11fb71ed7935bc982 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 10:44:02 2020 -0600 Adjust efcs walltime and eupd thread value on Orion commit 66cc1a062ba1b430e9ebaf41715997a3de0ff023 Merge: 9e8f9605 2432dc5b Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Mon Nov 16 15:48:34 2020 -0500 Merge pull request #1 from KateFriedman-NOAA/ccpp Fix missing COMROOT setting for Orion commit 2432dc5bbb1b3bc4c317063811333a5b30065794 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 16 14:40:59 2020 -0600 Fix missing COMROOT setting on Orion commit 9e8f960508e82f31e9d57da0fc37600b9697e4c9 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:24:08 2020 +0000 Modify build_all.sh while getopts "oc" option to while getopts "c" option commit 587e1986cb5c6307f2d10a01758994ce1155e36d Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:21:16 2020 +0000 scripts/exglobal_forecast.sh Merge with v16ccpp commit 6066462b23d34db815ed73c630ef624c41239215 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:53:44 2020 +0000 As requested, using 2e25df5fe952d27355ed58963148f46b82565469 for ufs-weather-model. commit bf312432b662c3e2b7bd8cd5de19dd5b5ee0c042 Merge: dd7b0068 d59c09c6 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:41:32 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp Pull in the iovr=3 in config.fcst commit dd7b0068cf0b598e58af41a92712e393674d14fd Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 14:39:04 2020 +0000 Modify exglobal_forecast.sh to create namelist in runable sequence. commit d59c09c6d9445110871da231ef9945d201986f81 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:06:48 2020 +0000 modified: ../scripts/exglobal_forecast.sh commit d8aa4423f1a6f2c63c00a4ed5a38a4df6501ef7b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:04:43 2020 +0000 modified checkout.sh to check out a hash instead of head of the develop branch commit e29fd0c517840a9996987e7ae21f78cc2af8ca12 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 03:00:50 2020 +0000 modified: ../parm/config/config.fcst and exglobal_forecast.sh 1. use iovr for model after https://github.com/NCAR/ccpp-physics/pull/514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option commit 1ec0ebf31767422a67e3f56c951f5ccb2305c7e5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 17:48:51 2020 -0500 bug fix exglobal_forecast.sh commit 336647bcaced053baeee43ef2417b34b6b196439 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 12:55:20 2020 -0500 modified: exglobal_forecast.sh to add min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"} commit 9616b2eef626ce8db2f3a5da343b0a7ece2137cb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 04:05:48 2020 +0000 modified: build_fv3.sh commit fe79b87abbeca26939dbcc1ccd7cb5fb2624e666 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 20:11:26 2020 +0000 Clean up development code from build_all commit 9cd719d0609cefb3261870528b88c54d24117c47 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 19:53:31 2020 +0000 Modified build_all.sh checkout.sh partial_build.sh to allow switch turn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh commit 8aed1e4d44166ffb6036409bced3ad04f038dfc4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 17:04:07 2020 +0000 modified: ../scripts/exglobal_forecast.sh modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD commit 7826668c6baaf113785e88b79bc059f8a430eace Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:44:31 2020 +0000 Remove development configuration from config.nsst commit 1e5ebe44fd525135114b0fc74a698cadd2eb5eaa Merge: 0b540d78 b0536156 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:36:06 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp commit 0b540d78c47755cb0bd68a8dc934461ec1bef345 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:35:26 2020 +0000 update eupd resource commit 267c661710562ab620c07212626268f0201c6c20 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:31:56 2020 +0000 Merge with v16ccpp modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: scripts/exglobal_forecast.sh modified: sorc/build_fv3.sh modified: sorc/checkout.sh commit b0536156ed8383150fc65d5897c6acd17c0df248 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 06:30:25 2020 +0000 modified: parm/config/config.base.emc.dyn parm/config/config.base.nco.static scripts/exglobal_forecast.sh sorc/build_all.sh sorc/build_fv3.sh sorc/checkout.sh to add the option to check out ufs_weather_model and run with CCPP phsyics commit b80676925e5dca6c26d8dbf59c8ca74c0efe5fcb Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 20:18:08 2020 +0000 sync config.base.emc.dyn and config.resources with development commit 6e6fdd79515966f84334e9319dbb3b9cfff9095c Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 19:28:06 2020 +0000 Remove GSD suite file and aero IC extract util commit 8aed527d4358e131fba73785469d1fec957e619a Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:23:21 2020 +0000 deleted: jobs/rocoto/aeroic.sh commit d2191414c48835799e578a6010d7dbfdb6babb78 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:11:43 2020 +0000 Changes to be committed: modified: jobs/rocoto/fcst.sh deleted: modulefiles/module_base.wcoss_dell_p3_fcst deleted: parm/config/config.aeroic modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: sorc/build_fv3.sh modified: sorc/checkout.sh modified: sorc/link_fv3gfs.sh deleted: ush/load_fv3gfs_modules_fcst.sh deleted: ush/rocoto/setup_workflow_fcstonly_aeroic.py commit 490f0a73d852f709e1232d4a4a9ee7f3d95d58d9 Merge: 52f59845 e3972f17 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:49:48 2020 +0000 Merge remote-tracking branch 'upstream/develop' into feature/ccpp commit 52f59845f62bd9cc16b6b1197a7de04a4b4a1d86 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:04:33 2020 +0000 As of 11/12/2020, this package is tested with a C768 cycled (6 cycle) run on Dell system using FV3_GFS_v16beta (imp_physics=11). The wave components are turned off. Ready to merge back to the development. The expdir and log files are available on HPSS: /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-LOG.tar /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-EXPT.tar File parm/config/config.resources has been modified to fix EUPD job issue in job card resource. File sorc/build_fv3.sh and sorc/link_fv3gfs.sh changed to clear up development remark. Removed a developer directory that is not required for FV3_GFS_v16beta confiruration. commit e3972f1778242d696bcc4eb4a979d46373e8d193 Merge: 9f7eebaf 671856dd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 12:55:23 2020 -0500 Merge pull request #174 from NOAA-EMC/port2orion GFSv16 release hand-off state, Orion support, and additional low res R&D updates commit b096e2941e4817eace7d8d9e9173ca92a3f72944 Merge: 9fa9ffe9 670b97c2 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 10:54:07 2020 -0500 Merge pull request #173 from JessicaMeixner-NOAA/bugfix/rtofsissues Updates for RTOFS preprocessing for wave model commit 671856ddf96ff4ae2df8a5feacd1b184ce9b8702 Merge: 5383477a 9f7eebaf Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 20:43:26 2020 +0000 Sync merge with develop to resolve conflicts commit 5383477af879dd671dbab066b41eea7e2428e50f Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 18:46:43 2020 +0000 Change wavepostbndpnt to wait for fcst to end commit 201abf3e7ed9b5cb66bec43bcb9e4d34b3c6d5f9 Merge: f4ceb182 9fa9ffe9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Nov 5 12:10:32 2020 -0600 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit f4ceb182685a5d6d6fb18b2e40c48ae0623a0794 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 14:49:08 2020 +0000 Hera updates for OUTPUT_FILETYPES and resources commit 896d19529c828a62574c835d6d372701588fe758 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Nov 4 10:19:17 2020 -0600 Set nth_fcst to 4 for C384 deterministic commit 37d01e9fc68517c39b66a1ab67453b016666d590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:06:59 2020 -0600 Tie DOIAU_ENKF to DOIAU and add DOIAU check for IAU_OFFSET and IAU_FHROT in config.base commit 1a11fd21740860275f9be14caf1e615691075414 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:49:12 2020 +0000 Increase gfsfcst walltime for C192 commit 670b97c2673054b8d18a004390af0093520b1968 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Nov 2 20:46:33 2020 +0000 updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr commit 190b78c8d34f60e84c80b47a97cb4184e4e11fd9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 18:41:32 2020 +0000 Set nth_fcst to 4 for C384 on Hera to handle less memory commit 713c51eabc40b80e02314b5955b0efab3b235344 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 17:54:49 2020 +0000 Add FDATE calculation to setup scripts and change FDATE in to parsed value in config.base.emc.dyn commit 306ea5f15120d808760bd58b247b5861a8813670 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 10:43:20 2020 -0600 Reduce C384 nth_fv3 to 1 in config.fv3 commit 9fa9ffe97d23ad69c33658875c9b0c3440c2c97f Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 15:24:48 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 commit 24226384780c9c2438abec1864923f87371798d4 Merge: 70593343 a3b46385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:48:13 2020 +0000 Merge branch 'release/gfsv16.0.0' of https://github.com/NOAA-EMC/global-workflow into release/gfsv16.0.0 commit 705933436f2f42d5fde17b8aa4a57918f2c66b6a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:46:51 2020 +0000 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. commit c9e0566eb2e6179410583c14d48a971a79dc4c88 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 29 20:50:46 2020 +0000 Revert epos change in setup_workflow.py commit a3b463859154c1127bb66764a65baa89929a0a5f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Oct 28 18:18:51 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 commit ab0577de3c4bbbdc58219fd1c95a142cf93b5f4a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 28 13:52:34 2020 +0000 Issue #1 - update anal, eobs, and eupd resources for low res commit 97f1ae89baf37d8bd1940f179fecb6bdc1279fa2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 27 17:52:28 2020 +0000 Issue #1 - adjust epos groups for DOIAU/DOIAU_ENKF=NO commit cb6d74e0c7363f7e54d879a97f457f7d4a37d926 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 15:56:58 2020 -0400 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md commit c09678fb33d0ece36de1af223b5cdf8384d5b9c3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 14:43:09 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit 59f08b31916d3585aa9a4832dc9de865e3a350cf Merge: cbe5ddff 1171a622 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 19:47:42 2020 +0000 Merge remote-tracking branch 'upstream/port2orion' into feature/ccpp commit cbe5ddff8013a03a9391eead40796f9c30d7ca28 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 18:35:49 2020 +0000 Cycled warm start run using develop ufs-weather-model branch and feature/ccpp using merged branch on the 10/13 (4da0f) with feature/gfsv16b (31563). CPP_SUITE="FV3_GFS_v16beta" build_fv3 option: CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GSD_v0,FV3_GSD_noah,FV3_GFS_v16beta wave is turned off for this test because it's for atmospheric physics and comparison. commit 1171a62238f0877fc8956df669f07fc9a418c145 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 22 14:01:31 2020 +0000 Issue #1 - increase wavepostbndpnt and wavepostpnt walltimes to give more time on Hera commit c3bab19722a8b301e9ac4d2367b7e3e5dc2d88e7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 21 20:13:38 2020 +0000 Fix wrong DATE in new if-block in config.anal for cold start checking commit 636ded675b81b15e8b3af2a211edf44f17972cf0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 19:23:16 2020 +0000 Issue #1 - add wtime_fcst_gfs time of 4hrs for C384 commit 4007f116adcde8372e590489d0faa0181babbc15 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 18:29:15 2020 +0000 Issue #1 - fix firstcyc queue bug in workflow_utils.py on WCOSS commit ebdb058fd138a7aa408d69c967747686ea5b77d9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 13:23:05 2020 -0500 Issue #1 - resource updates from low res testing - set io_layout to "1,1" for low res gfs in config.fcst - set npe_wav[_gfs] to 140 for all resolutions, same wave grid - increase nth_fv3 to 4 for C192 and C384 - set smaller walltime for gfsfcst when resolutions less than C768 commit 3f0ab6ff2dd4ca42a45e68972b1936d398b32097 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 17:55:18 2020 +0000 Issue #1 - increase C768 npe_eobs to 200 for Hera nodes with less memory commit d5b69c49ddbd03982db79f09707a49d01ef0b443 Merge: 4ebdd230 794e6655 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:56:27 2020 +0000 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - pull in corrected npe_eobs values in config.resources Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 4ebdd230c121a3c839829aa4ef855d80eb462549 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:53:46 2020 +0000 Add UPP netcdf module library load to HERA.env to resolve runtime netcdf version mismatch commit 794e6655cb227973e47b2373d0e4c97bf297479e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 16:45:58 2020 +0000 Issue #1 - pull in corrected npe_eobs values in config.resources commit 1d0cad425b1e163377bba8ace6622bbbb2d81de0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:24:55 2020 +0000 Issue #1 - add parm mon folder to ignore list and move parm section of ignore list up commit d632c87a8f2ce85d54fa45da14aa09f91a0ec680 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:20:31 2020 +0000 Issue #1 - add FDATE to config.base commit 22d4118f4bc7853fa81f6505fd9aaf5bc6dab4f8 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:12:29 2020 +0000 Issue #1 - save GFSv16 hand-off resource settings into new static nco configs commit 6fd73d7fdf40b291ff49193b606538b540e46139 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:11:37 2020 +0000 Issue #1 - new FV3 tag that builds on Hera/Orion and update for building/running high res system on Hera commit 484550c13d8ef957478f20afd6e722f7f610bb8f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Oct 16 15:40:35 2020 +0000 Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 58dcf6d961f7478fec64a850e7bcd19ffd8f3741 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 15 15:08:38 2020 -0500 Update .gitignore for script renaming and removed external files commit e3f8df65082853baa5a22ed3b242efdae66d40ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 15 11:59:58 2020 -0500 Add wave env updates into ORION.env, increase waveinit tasks, and update resources for analysis and efcs walltimes commit 4da0feaaf8b63ee4662be8be9c5f59d547164b0b Merge: ee0f27b3 31563a59 Author: lin.gan <lin.gan@noaa.gov> Date: Tue Oct 13 20:51:48 2020 +0000 Merge remote-tracking branch 'origin/feature/gfsv16b' into feature/ccpp commit e5e7cf1ea61d99080ec95b446c1bee45a57321a3 Merge: a1a7ac94 4b2d26db Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 13 14:25:56 2020 -0500 Sync merge with release/gfsv16.0.0 branch commit 4b2d26db3b9b66ecfdd4756bfcddb6e16f255b03 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 13 17:41:24 2020…

Squashed commit of the following: commit 479000a5e7b4b9c575784ecca400594525396556 Merge: bbf30008 5a16a7a0 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Jan 21 11:31:41 2021 -0500 Merge pull request #244 from NOAA-EMC/issue243 Issue #179 and issue #243 - update Fit2Obs to newm.1.2 tag and correct COMROOT path for Hera commit 5a16a7a010477b5bbe530a684608b151b8f05755 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 21 16:27:54 2021 +0000 Issue #179 and issue #243 - update Fit2Obs to newm.1.2 tag and correct COMROOT path for Hera commit bbf3000856ebb20ca761c6e7d761f5fcefad0228 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 15 18:36:20 2021 +0000 HOTFIX: Issue #241 - update EMC_verif-global tag to remove use of /tmp space commit 43ae19be02687cdc362a34e11d299009f3dd8ffc Merge: c7e6a7f8 48be4d18 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Jan 14 10:35:16 2021 -0500 Merge pull request #239 from KateFriedman-NOAA/issue179 Issue #179 - update to config.vrfy for Fit2Obs tag which supports Orion commit 48be4d18263ea4f1c706c55e4b6b70d87f19c729 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 14 08:38:20 2021 -0600 Issue #179 - update to config.vrfy for Fit2Obs tag which supports Orion commit c7e6a7f8c6f7b0d5648b1379633c252f165c2ca6 Merge: ef8b6415 4be7954d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jan 13 14:20:49 2021 -0500 Merge pull request #237 from KateFriedman-NOAA/issue233 Update GLDAS tag to gldas_gfsv16_release.v1.13.0 commit 4be7954ddcbb56e7ee5167f6d43054d8821b6a4f Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 5 12:06:51 2021 -0600 Issue #233 - remove unnecessary extra space in tag line for gldas commit bcbdd12c39124eae14ec0b52d0a05b7c6944c27e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 5 12:03:15 2021 -0600 Issue #233 - update GLDAS tag to gldas_gfsv16_release.v1.13.0 commit ef8b64150a0cb7137b1ec48e9c8f3c7e9b3223de Merge: fca3433b cffc5682 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Mon Jan 4 10:52:08 2021 -0500 Merge pull request #231 from yangfanglin/feature/multiple_restart modified exglobal_forecast.sh to enable multiple reruns from breakpoint restart initial conditions commit cffc5682f34eb9ab0bbf42ee11eaa848152c0dbc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 30 18:43:34 2020 +0000 modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug. commit fca3433bf869b12cade480e1394688d7b6f95687 Merge: a95cce5f abb168bc Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Dec 18 09:30:21 2020 -0500 Merge pull request #221 from NOAA-EMC/nco_v16_changes NCO changes for v16.0.3 commit abb168bc32fdff7b08ce8ecc54ea832aabf03c44 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 19:17:26 2020 +0000 Issue #1 and issue #220 - set C192/C96/C48 npe_eobs back to dev values for develop commit 65b4d965fa6ebee445a509a0593e925ae5d5b513 Merge: a95cce5f e89045b9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 18:46:06 2020 +0000 Issue #1 - merge v16.0.3 changes from NCO into develop commit e89045b9fb1d9026810ef5c77a3554c67c41718e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 16 16:38:01 2020 +0000 Issue #1 - add grib_util module load to several analysis ecflow scripts commit a95cce5f3e123a241000b209fb50cc8911d13466 Merge: 1562bb97 2646921d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 14:05:27 2020 -0500 Merge pull request #216 from NOAA-EMC/issue189 Issue #189 - update ufs-weather-model hash commit 2646921d0da6dc8a136ebeba6cceceacf3806c23 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 18:56:33 2020 +0000 Issue #189 - update ufs-weather-model hash commit 1562bb97ac21ce2406ed21f76b7c8d58cecf4a2a Merge: f3d11b9b 7a9bc00e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 09:51:07 2020 -0500 Merge pull request #213 from NOAA-EMC/hotfixes Hotfixes - issues #201, 202, 208 commit 7a9bc00e367126044f83b0fc9b737386788899a9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Dec 14 21:35:58 2020 +0000 Issue #201 - workaround for failing post000 job before hpc-stack solution commit 425588f711812819744c8060a46444b9d4bf2b63 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 21:06:20 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change commit ec5e2e5dd98d80ca3e3d696d5eb19a5a4180c87b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 15:06:16 2020 +0000 Issue #1 - correct gridded wave parm files for v16.0.3 commit 39246c6e1604e9e81ddc384c951861c43e30cdcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 11 19:26:51 2020 +0000 Issue #1 - changes from NCO for GFSv16.0.3 commit b9f7de8af3cb966fa756e38feaf98ce1f84ee2f3 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 19:15:00 2020 +0000 Issue #1 - update Externals.cfg with final tags for GFSv16.0.2 commit cff28bdbf0daa6980766a011f73e2a021aee2341 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 15:59:05 2020 +0000 Fixes for issue #202 (FINDDATE) and issue #208 (postsnd.sh permissions) commit 7c7482de947ae686b619fc72e7dd192410b7e0f7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 14:10:25 2020 +0000 Issue #1 - correct permissions on jobs/rocoto/postsnd.sh commit dee856c5b54c19cc9de6898908fdb9d4f8d99baa Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 20:58:20 2020 +0000 Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file commit 0ee264bef7ea71d32426b6b6d77109e73b4235ff Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 18:49:54 2020 +0000 Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively commit b5d97ab6912596d3b343843ba3ef6e8c5f71a21a Merge: 6da1a24b be5f9ece Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:49:29 2020 -0500 Merge pull request #205 from NOAA-EMC/release/gfsv16.0.0.nco Script alert updates from NCO for wave downstream commit be5f9ece8329ee6b18af92d044809f018404669b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 19:45:23 2020 +0000 Script alert updates from NCO for wave downstream commit 6da1a24ba89c80ee5f5df38136d03483207d39dd Merge: ce1ae970 069f2662 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:12:37 2020 -0500 Merge pull request #204 from NOAA-EMC/release/gfsv16.0.0.nco GFSv16 NCO changes - early December edition commit 069f2662bc2eabc822f13eec4e2f69f1c39606a8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 2 20:01:17 2020 +0000 Add override for COMIN_WAV_RTOFS in emc mode for waveprep job commit 194f280cf7351d58b0295af35c91e74ac6925d0b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 30 18:47:19 2020 +0000 Issue #197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO). commit d82efa8417fe6247ed08cd74a447460ba6bb51f9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 18:06:12 2020 +0000 modified: JGLOBAL_FORECAST commit 25a28c8dacc8659071eca65be15fb4de08b18d80 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 17:02:05 2020 +0000 modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments. commit 7283c7e60c98639c6466ce5903ab03c36a7f5f57 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 27 22:16:31 2020 +0000 modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters commit e6003773c0af51bd15eb2bdb6831c99dcce1cc5b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Nov 24 03:25:23 2020 +0000 modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16 commit bd5294ee6844f8a5adbd04eae78999068c0961a2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Nov 21 17:32:05 2020 +0000 modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix commit 5a516b4cdf0333e4b8316c8cbda7be9f9dccc543 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 05:08:33 2020 +0000 modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations commit 759cf3341bb400d3b3254a05a624e3ab671ef6cd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 04:51:48 2020 +0000 Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected. use EMC's updated version modified: jobs/JGFS_ATMOS_POSTSND Use NCO's updated version modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: parm/config/config.base.nco.static Updated by both NCO and EMC modified: parm/config/config.wave Updated gldas tag to gldas_gfsv16_release.v1.12.0 modified: sorc/checkout.sh commit f39ea0cbbabaa5e69e03cec4db309e2adfb33756 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Nov 19 04:43:17 2020 +0000 create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_calc.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_diag.ecf modified: ecflow/ecf/scripts/gdas/atmos/gempak/jgdas_atmos_gempak.ecf modified: ecflow/ecf/scripts/gdas/atmos/gempak/jgdas_atmos_gempak_meta_ncdc.ecf modified: ecflow/ecf/scripts/gdas/atmos/init/jgdas_atmos_gldas.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_dump.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_dump_alert.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_dump_post.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_tropcy_qc_reloc.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_emcsfc_sfc_prep.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_prep.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_prep_post.ecf modified: ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_anl.ecf modified: 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ecflow/ecf/scripts/gfs/wave/post/jgfs_wave_prdgen_bulls.ecf modified: ecflow/ecf/scripts/gfs/wave/post/jgfs_wave_prdgen_gridded.ecf modified: ecflow/ecf/scripts/gfs/wave/prep/jgfs_wave_prep.ecf modified: jobs/JGFS_ATMOS_POSTSND modified: jobs/JGLOBAL_ATMOS_EMCSFC_SFC_PREP modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_INIT modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: jobs/JGLOBAL_WAVE_PREP modified: parm/config/config.wave modified: parm/transfer_gdas_1a.list modified: parm/transfer_gdas_1b.list modified: parm/transfer_gdas_1c.list modified: parm/transfer_gdas_enkf_enkf_05.list modified: parm/transfer_gdas_enkf_enkf_10.list modified: parm/transfer_gdas_enkf_enkf_15.list modified: parm/transfer_gdas_enkf_enkf_20.list modified: parm/transfer_gdas_enkf_enkf_25.list modified: parm/transfer_gdas_enkf_enkf_30.list modified: parm/transfer_gdas_enkf_enkf_35.list modified: parm/transfer_gdas_enkf_enkf_40.list modified: parm/transfer_gdas_enkf_enkf_45.list modified: parm/transfer_gdas_enkf_enkf_50.list modified: parm/transfer_gdas_enkf_enkf_55.list modified: parm/transfer_gdas_enkf_enkf_60.list modified: parm/transfer_gdas_enkf_enkf_65.list modified: parm/transfer_gdas_enkf_enkf_70.list modified: parm/transfer_gdas_enkf_enkf_75.list modified: parm/transfer_gdas_enkf_enkf_80.list modified: parm/transfer_gdas_enkf_enkf_misc.list modified: parm/transfer_gdas_misc.list modified: parm/transfer_gfs_1.list modified: parm/transfer_gfs_10a.list modified: parm/transfer_gfs_10b.list modified: parm/transfer_gfs_2.list modified: parm/transfer_gfs_3.list modified: parm/transfer_gfs_4.list modified: parm/transfer_gfs_5.list modified: parm/transfer_gfs_6.list modified: parm/transfer_gfs_7.list modified: parm/transfer_gfs_8.list modified: parm/transfer_gfs_9a.list modified: parm/transfer_gfs_9b.list modified: parm/transfer_gfs_misc.list modified: parm/transfer_rdhpcs_gdas.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_1.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_2.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_3.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_4.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_5.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_6.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_7.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_8.list modified: parm/transfer_rdhpcs_gfs.list modified: parm/transfer_rdhpcs_gfs_nawips.list commit ce1ae9709fe506f32833910f3cf4f68117c7d0f2 Merge: b096e294 e9d00e41 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Nov 18 16:55:14 2020 -0500 Merge pull request #192 from JessicaMeixner-NOAA/bf/waveICfreq wave parm update for realease/gfsv16 commit e9d00e41e939fca68a39293b973326531f3c6983 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Nov 18 19:51:25 2020 +0000 update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle commit f3d11b9bc7e669f4c11266654649c4d5e28f16a9 Merge: e3972f17 32a004aa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 14:01:54 2020 -0500 Merge pull request #186 from lgannoaa/feature/ccpp Initial support for CCPP. commit 32a004aae3949e8fd3bda7a4f628995317d33f47 Merge: 66cc1a06 036cc113 Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Tue Nov 17 13:15:37 2020 -0500 Merge pull request #2 from KateFriedman-NOAA/ccpp Adjust efcs walltime and eupd thread value on Orion commit 036cc113dcd5787ce4bccfb11fb71ed7935bc982 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 10:44:02 2020 -0600 Adjust efcs walltime and eupd thread value on Orion commit 66cc1a062ba1b430e9ebaf41715997a3de0ff023 Merge: 9e8f9605 2432dc5b Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Mon Nov 16 15:48:34 2020 -0500 Merge pull request #1 from KateFriedman-NOAA/ccpp Fix missing COMROOT setting for Orion commit 2432dc5bbb1b3bc4c317063811333a5b30065794 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 16 14:40:59 2020 -0600 Fix missing COMROOT setting on Orion commit 9e8f960508e82f31e9d57da0fc37600b9697e4c9 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:24:08 2020 +0000 Modify build_all.sh while getopts "oc" option to while getopts "c" option commit 587e1986cb5c6307f2d10a01758994ce1155e36d Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:21:16 2020 +0000 scripts/exglobal_forecast.sh Merge with v16ccpp commit 6066462b23d34db815ed73c630ef624c41239215 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:53:44 2020 +0000 As requested, using 2e25df5fe952d27355ed58963148f46b82565469 for ufs-weather-model. commit bf312432b662c3e2b7bd8cd5de19dd5b5ee0c042 Merge: dd7b0068 d59c09c6 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:41:32 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp Pull in the iovr=3 in config.fcst commit dd7b0068cf0b598e58af41a92712e393674d14fd Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 14:39:04 2020 +0000 Modify exglobal_forecast.sh to create namelist in runable sequence. commit d59c09c6d9445110871da231ef9945d201986f81 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:06:48 2020 +0000 modified: ../scripts/exglobal_forecast.sh commit d8aa4423f1a6f2c63c00a4ed5a38a4df6501ef7b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:04:43 2020 +0000 modified checkout.sh to check out a hash instead of head of the develop branch commit e29fd0c517840a9996987e7ae21f78cc2af8ca12 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 03:00:50 2020 +0000 modified: ../parm/config/config.fcst and exglobal_forecast.sh 1. use iovr for model after https://github.com/NCAR/ccpp-physics/pull/514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option commit 1ec0ebf31767422a67e3f56c951f5ccb2305c7e5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 17:48:51 2020 -0500 bug fix exglobal_forecast.sh commit 336647bcaced053baeee43ef2417b34b6b196439 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 12:55:20 2020 -0500 modified: exglobal_forecast.sh to add min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"} commit 9616b2eef626ce8db2f3a5da343b0a7ece2137cb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 04:05:48 2020 +0000 modified: build_fv3.sh commit fe79b87abbeca26939dbcc1ccd7cb5fb2624e666 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 20:11:26 2020 +0000 Clean up development code from build_all commit 9cd719d0609cefb3261870528b88c54d24117c47 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 19:53:31 2020 +0000 Modified build_all.sh checkout.sh partial_build.sh to allow switch turn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh commit 8aed1e4d44166ffb6036409bced3ad04f038dfc4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 17:04:07 2020 +0000 modified: ../scripts/exglobal_forecast.sh modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD commit 7826668c6baaf113785e88b79bc059f8a430eace Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:44:31 2020 +0000 Remove development configuration from config.nsst commit 1e5ebe44fd525135114b0fc74a698cadd2eb5eaa Merge: 0b540d78 b0536156 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:36:06 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp commit 0b540d78c47755cb0bd68a8dc934461ec1bef345 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:35:26 2020 +0000 update eupd resource commit 267c661710562ab620c07212626268f0201c6c20 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:31:56 2020 +0000 Merge with v16ccpp modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: scripts/exglobal_forecast.sh modified: sorc/build_fv3.sh modified: sorc/checkout.sh commit b0536156ed8383150fc65d5897c6acd17c0df248 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 06:30:25 2020 +0000 modified: parm/config/config.base.emc.dyn parm/config/config.base.nco.static scripts/exglobal_forecast.sh sorc/build_all.sh sorc/build_fv3.sh sorc/checkout.sh to add the option to check out ufs_weather_model and run with CCPP phsyics commit b80676925e5dca6c26d8dbf59c8ca74c0efe5fcb Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 20:18:08 2020 +0000 sync config.base.emc.dyn and config.resources with development commit 6e6fdd79515966f84334e9319dbb3b9cfff9095c Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 19:28:06 2020 +0000 Remove GSD suite file and aero IC extract util commit 8aed527d4358e131fba73785469d1fec957e619a Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:23:21 2020 +0000 deleted: jobs/rocoto/aeroic.sh commit d2191414c48835799e578a6010d7dbfdb6babb78 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:11:43 2020 +0000 Changes to be committed: modified: jobs/rocoto/fcst.sh deleted: modulefiles/module_base.wcoss_dell_p3_fcst deleted: parm/config/config.aeroic modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: sorc/build_fv3.sh modified: sorc/checkout.sh modified: sorc/link_fv3gfs.sh deleted: ush/load_fv3gfs_modules_fcst.sh deleted: ush/rocoto/setup_workflow_fcstonly_aeroic.py commit 490f0a73d852f709e1232d4a4a9ee7f3d95d58d9 Merge: 52f59845 e3972f17 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:49:48 2020 +0000 Merge remote-tracking branch 'upstream/develop' into feature/ccpp commit 52f59845f62bd9cc16b6b1197a7de04a4b4a1d86 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:04:33 2020 +0000 As of 11/12/2020, this package is tested with a C768 cycled (6 cycle) run on Dell system using FV3_GFS_v16beta (imp_physics=11). The wave components are turned off. Ready to merge back to the development. The expdir and log files are available on HPSS: /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-LOG.tar /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-EXPT.tar File parm/config/config.resources has been modified to fix EUPD job issue in job card resource. File sorc/build_fv3.sh and sorc/link_fv3gfs.sh changed to clear up development remark. Removed a developer directory that is not required for FV3_GFS_v16beta confiruration. commit e3972f1778242d696bcc4eb4a979d46373e8d193 Merge: 9f7eebaf 671856dd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 12:55:23 2020 -0500 Merge pull request #174 from NOAA-EMC/port2orion GFSv16 release hand-off state, Orion support, and additional low res R&D updates commit b096e2941e4817eace7d8d9e9173ca92a3f72944 Merge: 9fa9ffe9 670b97c2 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 10:54:07 2020 -0500 Merge pull request #173 from JessicaMeixner-NOAA/bugfix/rtofsissues Updates for RTOFS preprocessing for wave model commit 671856ddf96ff4ae2df8a5feacd1b184ce9b8702 Merge: 5383477a 9f7eebaf Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 20:43:26 2020 +0000 Sync merge with develop to resolve conflicts commit 5383477af879dd671dbab066b41eea7e2428e50f Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 18:46:43 2020 +0000 Change wavepostbndpnt to wait for fcst to end commit 201abf3e7ed9b5cb66bec43bcb9e4d34b3c6d5f9 Merge: f4ceb182 9fa9ffe9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Nov 5 12:10:32 2020 -0600 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit f4ceb182685a5d6d6fb18b2e40c48ae0623a0794 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 14:49:08 2020 +0000 Hera updates for OUTPUT_FILETYPES and resources commit 896d19529c828a62574c835d6d372701588fe758 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Nov 4 10:19:17 2020 -0600 Set nth_fcst to 4 for C384 deterministic commit 37d01e9fc68517c39b66a1ab67453b016666d590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:06:59 2020 -0600 Tie DOIAU_ENKF to DOIAU and add DOIAU check for IAU_OFFSET and IAU_FHROT in config.base commit 1a11fd21740860275f9be14caf1e615691075414 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:49:12 2020 +0000 Increase gfsfcst walltime for C192 commit 670b97c2673054b8d18a004390af0093520b1968 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Nov 2 20:46:33 2020 +0000 updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr commit 190b78c8d34f60e84c80b47a97cb4184e4e11fd9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 18:41:32 2020 +0000 Set nth_fcst to 4 for C384 on Hera to handle less memory commit 713c51eabc40b80e02314b5955b0efab3b235344 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 17:54:49 2020 +0000 Add FDATE calculation to setup scripts and change FDATE in to parsed value in config.base.emc.dyn commit 306ea5f15120d808760bd58b247b5861a8813670 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 10:43:20 2020 -0600 Reduce C384 nth_fv3 to 1 in config.fv3 commit 9fa9ffe97d23ad69c33658875c9b0c3440c2c97f Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 15:24:48 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 commit 24226384780c9c2438abec1864923f87371798d4 Merge: 70593343 a3b46385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:48:13 2020 +0000 Merge branch 'release/gfsv16.0.0' of https://github.com/NOAA-EMC/global-workflow into release/gfsv16.0.0 commit 705933436f2f42d5fde17b8aa4a57918f2c66b6a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:46:51 2020 +0000 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. commit c9e0566eb2e6179410583c14d48a971a79dc4c88 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 29 20:50:46 2020 +0000 Revert epos change in setup_workflow.py commit a3b463859154c1127bb66764a65baa89929a0a5f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Oct 28 18:18:51 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 commit ab0577de3c4bbbdc58219fd1c95a142cf93b5f4a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 28 13:52:34 2020 +0000 Issue #1 - update anal, eobs, and eupd resources for low res commit 97f1ae89baf37d8bd1940f179fecb6bdc1279fa2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 27 17:52:28 2020 +0000 Issue #1 - adjust epos groups for DOIAU/DOIAU_ENKF=NO commit cb6d74e0c7363f7e54d879a97f457f7d4a37d926 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 15:56:58 2020 -0400 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md commit c09678fb33d0ece36de1af223b5cdf8384d5b9c3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 14:43:09 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit 59f08b31916d3585aa9a4832dc9de865e3a350cf Merge: cbe5ddff 1171a622 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 19:47:42 2020 +0000 Merge remote-tracking branch 'upstream/port2orion' into feature/ccpp commit cbe5ddff8013a03a9391eead40796f9c30d7ca28 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 18:35:49 2020 +0000 Cycled warm start run using develop ufs-weather-model branch and feature/ccpp using merged branch on the 10/13 (4da0f) with feature/gfsv16b (31563). CPP_SUITE="FV3_GFS_v16beta" build_fv3 option: CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GSD_v0,FV3_GSD_noah,FV3_GFS_v16beta wave is turned off for this test because it's for atmospheric physics and comparison. commit 1171a62238f0877fc8956df669f07fc9a418c145 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 22 14:01:31 2020 +0000 Issue #1 - increase wavepostbndpnt and wavepostpnt walltimes to give more time on Hera commit c3bab19722a8b301e9ac4d2367b7e3e5dc2d88e7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 21 20:13:38 2020 +0000 Fix wrong DATE in new if-block in config.anal for cold start checking commit 636ded675b81b15e8b3af2a211edf44f17972cf0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 19:23:16 2020 +0000 Issue #1 - add wtime_fcst_gfs time of 4hrs for C384 commit 4007f116adcde8372e590489d0faa0181babbc15 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 18:29:15 2020 +0000 Issue #1 - fix firstcyc queue bug in workflow_utils.py on WCOSS commit ebdb058fd138a7aa408d69c967747686ea5b77d9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 13:23:05 2020 -0500 Issue #1 - resource updates from low res testing - set io_layout to "1,1" for low res gfs in config.fcst - set npe_wav[_gfs] to 140 for all resolutions, same wave grid - increase nth_fv3 to 4 for C192 and C384 - set smaller walltime for gfsfcst when resolutions less than C768 commit 3f0ab6ff2dd4ca42a45e68972b1936d398b32097 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 17:55:18 2020 +0000 Issue #1 - increase C768 npe_eobs to 200 for Hera nodes with less memory commit d5b69c49ddbd03982db79f09707a49d01ef0b443 Merge: 4ebdd230 794e6655 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:56:27 2020 +0000 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - pull in corrected npe_eobs values in config.resources Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 4ebdd230c121a3c839829aa4ef855d80eb462549 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:53:46 2020 +0000 Add UPP netcdf module library load to HERA.env to resolve runtime netcdf version mismatch commit 794e6655cb227973e47b2373d0e4c97bf297479e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 16:45:58 2020 +0000 Issue #1 - pull in corrected npe_eobs values in config.resources commit 1d0cad425b1e163377bba8ace6622bbbb2d81de0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:24:55 2020 +0000 …

…ep 1) to develop (NOAA-EMC#186) - update the syntax in the XML suite definition files, replace `lib="ccppphys" ver="N"` with `version=1` which indicates the suite definition file format version (i.e. the XML schema version) rather than the release version of ccpp-physics ; update the XML schema for the CCPP suite definition files (`suite.xsd`) - add variables in `GFS_typedefs.{f90,meta}` that are require to support the removal of the GFS DDT dependency in the radiation physics (mainly additional indices; see NCAR/ccpp-physics#508)

jkhender and others added 30 commits March 5, 2019 15:31

- updated lsm=3 for RUC LSM in config.fcst_GSDsuite

e2b1933

- changed FHCYCLE=0 for RUC LSM in config.base.emc.dyn_GSDsuite

updated fcst configuration files`

e1dca1b

VLab Issue #67188 - sync merge with develop branch after v15.2 commits

dd46a85

VLab Issue #67188 - updated GSI checkout revision and turned on wafs …

59d2bd9

…build for all machines

added CCPP-FV3 checkout to checkout.sh

8caefc9

add link so fv3gfs.fd points to fv3gfs_ccpp.fd checkout

bdb5df5

- rename *GSDsuite files to original names (config.base.emc.dyn, conf…

cc8a5b9

…ig.fcst, exglobal_fcst_nemsfv3gfs.sh) - moved convective options from config.fcst to config.base - created separate _v15 files

Merge branch 'develop' into gmtb_ccpp

2af0cfe

d2f877f - Thu Nov 14 19:34:51 2019

corrected version of FV3 to check out (nemsfv3_gfsv15.2.1)

6746e2d

VLab Issue #67188 - updated ProdGSI revision and resource settings

b1b9b80

VLab Issue #67188 - fix to env/WCOSS_C.env

6afa503

Merge branch 'port2hera' into gmtb_ccpp_hera

86109d8

update checkout.sh to use dtc/develop branch from NCAR:ufs-weather-mo…

538ed21

…del repository

corrected directory name and added logfile in checkout.sh

4327dd1

add specific version for dtc/develop branch in checkout.sh

fea6dd8

update build_fv3.sh for compiling CCPP version

0994970

updated config.base.emc.dyn files

c2de8c3

updated forecast configuration files

8a3cbc8

- updated aeroic.sh for hera

2c37fef

- temporary fix for fv3ic.sh for now to create FV3 ICs using FV3GFS nemsio files - moved convective options to config.fcst* files - updated links for diag and field tables for GSD - add CCPP executable to link_fv3gfs.sh

set RUCLSM with other land surface model options

ae98aab

merge in changes from develop branch

432d28a

-- GFSv15.2.3 ncep_post tag update -- GFSv15.2.4 change

for now, comment out top 2 lines in diag tables for GSD; otherwise, g…

de706ff

…et invalid file format error

updates for running GDFL mp with CCPP

130d354

- define satmedmf earlier in config.fcst for MYNN

8353387

- add new experiment setup scripts

add 'git submodule sync' command to checkout.sh for fv3gfs_ccpp.fd

6b5a136

-- modify checkout.sh to add new directory, sorc/aeroconv

5fcb12a

- adding changes to correct setting of ictype when generating FV3 ICs

97e9a3b

lgannoaa and others added 6 commits November 13, 2020 15:35

update eupd resource

0b540d7

Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp

1e5ebe4

Remove development configuration from config.nsst

7826668

modified: ../scripts/exglobal_forecast.sh

8aed1e4

modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD

Modified build_all.sh checkout.sh partial_build.sh to allow switch tu…

9cd719d

…rn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh

Clean up development code from build_all

fe79b87

WalterKolczynski-NOAA reopened this Nov 14, 2020

yangfanglin and others added 15 commits November 15, 2020 04:05

modified: build_fv3.sh

9616b2e

modified: exglobal_forecast.sh to add

336647b

min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"}

bug fix exglobal_forecast.sh

1ec0ebf

modified: ../parm/config/config.fcst and exglobal_forecast.sh

e29fd0c

1. use iovr for model after NCAR/ccpp-physics#514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option

modified checkout.sh to check out a hash instead of head of the devel…

d8aa442

…op branch

modified: ../scripts/exglobal_forecast.sh

d59c09c

Modify exglobal_forecast.sh to create namelist in runable sequence.

dd7b006

Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp

bf31243

Pull in the iovr=3 in config.fcst

As requested, using 2e25df5 for ufs-weather-model.

6066462

scripts/exglobal_forecast.sh Merge with v16ccpp

587e198

Modify build_all.sh

9e8f960

while getopts "oc" option to while getopts "c" option

Fix missing COMROOT setting on Orion

2432dc5

Merge pull request #1 from KateFriedman-NOAA/ccpp

66cc1a0

Fix missing COMROOT setting for Orion

Adjust efcs walltime and eupd thread value on Orion

036cc11

Merge pull request #2 from KateFriedman-NOAA/ccpp

32a004a

Adjust efcs walltime and eupd thread value on Orion

KateFriedman-NOAA approved these changes Nov 17, 2020

View reviewed changes

KateFriedman-NOAA merged commit f3d11b9 into NOAA-EMC:develop Nov 17, 2020

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Feature/ccpp #186

Feature/ccpp #186

lgannoaa commented Nov 12, 2020

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KateFriedman-NOAA commented Nov 17, 2020

Feature/ccpp #186

Feature/ccpp #186

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