Updates to support EMC_verif-global major release #317
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The connector script between EMC_verif-global and global-workflow run_verif_global_in_global_workflow.sh (housed in EMC_verif-global) contains a new feature that checks the maximum forecast hour for verification is the hour's initialization date is equal to or after the first GFS cycle initialization. If the date is before, the maximum forecast hour is adjusted to the maximum hour relative to the forecast verification date and the first GFS cycle initialization. This feature was added to cut down on METplus calls being done on data that don't exist. Refs: NOAA-EMC#315
Following the EMC_verif-global configuration remake, config.metp has been revamped to support the new configuration settings. Refs: NOAA-EMC#315
SDATE_GFS was added into the script preamble following the addition of the variable being added as a rocoto exported environment variable for metp tasks. Config.vrfy was removed from the list of relevant configs to source. Variables CDATEm1 and PDYm1 were removed and replaced with VDATE. VDATE is the verification date to be done by the metp tasks based on VRFYBACK_HRS set in config.metp. Lines were added to catch the exit status of VERIFGLOBAL_SH and to exit if not succesfully run so it can be caught by rocoto. Refs: NOAA-EMC#315
In the workflow XML for free forecasts there is no SDATE_GFS variable. The 'SDATE_GFS' variable was changed to be set to the value of 'SDATE'. Refs: NOAA-EMC#315
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FYI, I'm tied up with v16.1, JEDI, and other tasks. I won't be able to test or review the changes in this PR in the near future. So as to not hold up this review are there any other staff you could invite to review this PR? |
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@RussTreadon-NOAA Thanks for the heads up! GitHub listed you as a suggestion, and we have been corresponding a lot over METplus, so I followed the suggestion. I can add @yangfanglin as a reviewer instead. Not sure how tied up he is at the moment. |
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@mallory Row - NOAA Affiliate ***@***.***> It is better for
someone else to review. I cannot find much time either.
…On Wed, Apr 28, 2021 at 10:43 AM malloryprow ***@***.***> wrote:
@RussTreadon-NOAA <https://github.com/RussTreadon-NOAA> Thanks for the
heads up! GitHub listed you as a suggestion, and we have been corresponding
a lot over METplus, so I followed the suggestion. I can add @yangfanglin
<https://github.com/yangfanglin> as a reviewer instead. Not sure how tied
up he is at the moment.
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--
*Fanglin Yang, Ph.D.*
*Chief, Model Physics Group*
*Modeling and Data Assimilation Branch*
*NOAA/NWS/NCEP Environmental Modeling Center*
*https://www.emc.ncep.noaa.gov/gmb/wx24fy/fyang/
<https://www.emc.ncep.noaa.gov/gmb/wx24fy/fyang/>*
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@yangfanglin Will do, thanks for letting me know! |
There was a typo in the grid-to-obs METviewer related config variables. The variables started with "g2g1" instead of "g2o1". Refs: NOAA-EMC#315
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@malloryprow I rolled the changes for this PR into a test of feature/hpc-stack (without waves) on Hera that ran from 2020090118 through 2020090500 for a C192C96L127 run. Please see my METplus output here on Hera: Also, my EXPDIR with updated config.metp and ROTDIR with metp job logs are here: EXPDIR: /scratch1/NCEPDEV/global/Kate.Friedman/expdir/stacktest5 Thanks! |
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@KateFriedman-NOAA Output looks good! |
Great, thanks for checking @malloryprow ! I'm running the same experiment on WCOSS-Dell now and will share output for you to check when available. Thanks! |
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@malloryprow I forgot to copy the updated config.metp into my EXPDIR on WCOSS-Dell and uncovered a bug in a verif-global script in the process. Without the updated config the value of
However, since ...and fails with this error when the arguments for ndate are wrong: See log on Mars: /gpfs/dell3/ptmp/Kate.Friedman/comrot/stack192/logs/2020090206/gfsmetpg2g1.log The other two METplus jobs also failed from the same error: Thankfully an easy fix. Thanks! :) |
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@KateFriedman-NOAA I sure did mean FHMAX_GFS haha. I'll do the bug fix for that, and then update the checkout.sh with the bug fix release. |
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@KateFriedman-NOAA checkout.sh tag updated! |
Thanks for the quick fix @malloryprow ! I'm updating my Mars HOMEgfs sorc/verif-global.fd with the new tag, have copied the updated config.metp into my EXPDIR (what I failed to do earlier) and will rerun the failed jobs. Thanks! |
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@malloryprow Reruns were successful. Please take a quick look at the following logs on Mars (that previously failed from that bug): /gpfs/dell3/ptmp/Kate.Friedman/comrot/stack192/logs/2020090206/gfsmetp*.log It's only the first two cycles that ran the METplus jobs so far so I didn't expect them to run long since there isn't much data yet but would be good to get early confirmation they did what was expected. My next cycles are now kicking off, I'll be running this test through 2020090500, as with the Hera run. Thanks! |
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@KateFriedman-NOAA Yup, looking good so far! |
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Thanks @malloryprow ! Will send more output/logs when the run completes. |
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@KateFriedman-NOAA I checked the output on Mars in the metplus_data archive and all looks good! |
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@malloryprow Excellent, thanks for checking and confirming! |
KateFriedman-NOAA
requested changes
May 21, 2021
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Ah yes, forgot about that, done! |
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Close #315 |
jkhender
added a commit
to jkhender/global-workflow
that referenced
this pull request
Jan 29, 2022
Squashed commit of the following:
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb70 e5cd6369
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11e 0740b5b6
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74b fc48af56
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013dec ce66c74b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea5 7a166da9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2 5c042e08
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4 cfca8bb2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f5558 fba8cef5
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d1 e08f5558
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb3 e08f5558
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f b2879fe9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376ba e09a398f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc 6bad810b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77af e3fcfebc
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed3 e3fcfebc
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
udate config.base.emc.dyn
high resolution MERRA2 data used
fixed a bug related to orion
added merra2 input and update diag_table
merra2 workflow for orion
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
commit 4641c5d206a95e0e66276fa86d46ecd580213fd5
Merge: eff8a125 e3fcfebc
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 19 14:51:19 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit e3fcfebc1ff9c9f9ceda7b775de0c34117de6459
Merge: 95e0dffe fa5d1e2b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 19 10:02:19 2021 -0400
Merge pull request #254 from AnningCheng-NOAA/merra2
Addition of support for MERRA2
commit fa5d1e2ba242a08e26cb7bac8c68b700a83d1d60
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue May 18 10:41:16 2021 -0400
change fv3gfs checkout head
commit 283c4a044847bbadd0cef46e14dde4de97abe986
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 17 15:56:56 2021 -0400
fixed a compilation error, NEMs/exe existing, in hera
commit 6b574160f94329754677e7f4541ab07c44185bb0
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Fri May 14 13:44:18 2021 +0000
build_fv3.sh with ATM
commit dfc8aa9a2cf5370fff38520d2a28f3960be3b583
Merge: bf5d1106 95e0dffe
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed May 12 20:11:44 2021 +0000
Merge remote-tracking branch 'upstream/develop' into merra2
commit eff8a1258aa70c061fe69697388f8914935726ee
Merge: b1ad0b96 95e0dffe
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 12 19:15:17 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit 95e0dffea435af17be9150fcd0c842763768b45f
Merge: fc727f40 dd4d1879
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 12 14:51:10 2021 -0400
Merge pull request #323 from NOAA-EMC/sync/operations_v16.0.9
Bring operations branch v16.0.9 changes into develop
commit dd4d1879093516a7950c9e0e59f6e44e462199f6
Merge: fc727f40 68b9157b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 10 16:40:13 2021 +0000
Merge remote-tracking branch 'origin/operations' into sync/operations_v16.0.9
* origin/operations:
bugfix for not removing last point from list in wave post pnt jobs
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
Refs: #309
commit 8def77afd4a9f1cd6cdca42c956bc7ebf675a58d
Merge: c6e2a96e d46e8cf4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 10 11:45:02 2021 -0400
Merge pull request #322 from JessicaMeixner-NOAA/hpcstackww3
Updates for ww3 pre and post exec builds for hpc-stack
commit d46e8cf49aff0dbf72e457f1177e10e6f50252a6
Author: Jessica Meixner <Jessica.Meixner@noaa.gov>
Date: Mon May 10 15:31:56 2021 +0000
update for ww3_pre/post build:
-- remove ww3 specific module files
-- updated module base files to be in sync with ufs-weather-model
except that jasper is a more recent version which is needed for ww3_grib
-- added extra ww3 execs needed for this branch
-- added ww3prepost build to build_all and partial build
commit c6e2a96e86611cce00455609d9be803d580e7bc0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:30:13 2021 +0000
Change fix file linking to scan for possible subfolders in set
- instead of providing subfolder names, scan for subfolders in FIX_DIR path
and then create symlinks based on existing subfolders in set
- will not have to keep updating list of subfolders now
Refs: #164
commit aa1d1e9ca1d8521ef22e1bdb654d4a70e7b1e29e
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:27:13 2021 +0000
Change CCPP_SUITE from FV3_GFS_v16beta to FV3_GFS_v16
- newer ufs-weather-model hash supports FV3_GFS_v16 suite
Refs: #164
commit 1aea3ee393c99d4f76556fbbdbebc43f629558c2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:30:06 2021 +0000
Add build script and modulefiles for WW3 build
- WW3 execs no longer built by FV3 build, need separate build now
- add new build_ww3prepost.sh script for building WW3 execs in ufs-weather-model checkout
- add modulefiles for WCOSS-Dell, Hera, and Orion
Refs: #164
commit 214431a2c04f6e685e966810621fc2fae771d2f5
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:26:00 2021 +0000
Update WAFS execs to include .x
- update WAFS exec names in link_fv3gfs.sh to include ".x" extension that was added with new version
Refs: #164
commit eb1613764794a35d165e55423682ed592b2aaacb
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:22:06 2021 +0000
ufs-weather-model hash update for WW3 support with hpc-stack
- update ufs-weather-model hash to 554aedcd63e4a7c5012570406132eaf76e249ca9
- update build_fv3.sh for new compile arguments for CCPP/WW3 build
Refs: #164
commit b1ad0b96328a54112ecc13ff4b71dcc08556a8c1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 5 14:13:58 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.1
Refs: #315
commit c206e8d2606f14ee6188740f881673ff512b866b
Author: Mallory Row <mallory.row@noaa.gov>
Date: Mon May 3 19:16:42 2021 +0000
Fix typo in config.metp
There was a typo in the grid-to-obs METviewer related config variables.
The variables started with "g2g1" instead of "g2o1".
Refs: #315
commit f9013decd5af75f66eda619175bacc7549f4746a
Author: Brian Curtis <Brian.Curtis@noaa.gov>
Date: Mon May 3 14:37:13 2021 -0400
Files to test for python3 compatibility
commit 858f216330d7ab71137afe6331f6576fec413aee
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:19:56 2021 +0000
Update EMC_post, UFS_UTILS, EMC_gfs_wafs versions in Externals.cfg
Refs: #164
commit 6ce83363726ece6dbd34719430dd44f5e63bbc3c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:14:54 2021 +0000
Component updates for UPP, WAFS, UFS_UTILS
- new tag in checkout for UFS_UTILS to use hpc/1.1.0
- new hash in checkout for UPP/EMC_post to support GTG and GTG code copy fix
- new hash in checkout for WAFS/EMC_gfs_wafs to support hpc-stack
- build script update for WAFS (cmake/stack)
- WAFS GCIP config update to fix runtime error
Refs: #164
commit 709095709ca60498d05ea0f519b494501e1ecdf2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:11:51 2021 +0000
Update util_shared to 1.3.0 on WCOSS-Dell
- version changed in production for v16.0.9 footer fix
Refs: #164
commit bf5d110632fc67653441e6830bfdcdddda906706
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 3 10:53:37 2021 -0400
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
commit fb47a5a0f7391f670461b00eaf324c3b0102ef1f
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Apr 28 17:50:15 2021 +0000
Update TC_tracker version in config.vrfy
- new TC_tracker.v1.1.15.4 was made available by Jiayi Peng
- new version supports hpc-stack on supported platforms
- installed locally on WCOSS-Dells, Hera, and Orion
Refs: #164
commit 587ac0c914430d5b887327d7c566c452d2eace62
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed Apr 28 10:36:49 2021 -0400
changes added in link_fv3gfs for fix_aer
commit 48690cd07ceeb90c6808346a04a31a6166505c86
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed Apr 28 14:00:46 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.0
commit 1d0e0c29979101b451f1fda265af3f9a716bb9de
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Apr 27 19:33:09 2021 +0000
Reverting resource related changes
- will commit resource adjustments separately
Refs: #164
commit 101905ce4d92a544d353700b0acdc137aa61b088
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue Apr 27 14:15:59 2021 -0400
changed fix dir for link_fv3gfs
commit 7cd6e0e3000a47b39fa0c7e75ad66150e96385d8
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 14:44:03 2021 +0000
Fix setting of 'SDATE_GFS' for free forecast XML
In the workflow XML for free forecasts there is no SDATE_GFS
variable. The 'SDATE_GFS' variable was changed to be set to the
value of 'SDATE'.
Refs: #315
commit d34b99d4e3d369b784fd9d2c639a0bddd1bbfc0c
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 12:59:51 2021 +0000
Clean up and add new settings in metp.sh
SDATE_GFS was added into the script preamble following the
addition of the variable being added as a rocoto exported
environment variable for metp tasks.
Config.vrfy was removed from the list of relevant configs
to source.
Variables CDATEm1 and PDYm1 were removed and replaced with
VDATE. VDATE is the verification date to be done by the metp
tasks based on VRFYBACK_HRS set in config.metp.
Lines were added to catch the exit status of VERIFGLOBAL_SH
and to exit if not succesfully run so it can be caught by
rocoto.
Refs: #315
commit 998f1a454427dedd46bb20b36e381bedbdf3e349
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 12:49:38 2021 +0000
Revamp of config.metp
Following the EMC_verif-global configuration remake, config.metp
has been revamped to support the new configuration settings.
Refs: #315
commit 6a01ae405202b8984fe8efa73573d7fdba2b74d2
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu Apr 22 17:17:14 2021 +0000
Add 'SDATE_GFS' rocoto env var for metp tasks
The connector script between EMC_verif-global and global-workflow
run_verif_global_in_global_workflow.sh (housed in EMC_verif-global)
contains a new feature that checks the maximum forecast hour for
verification is the hour's initialization date is equal to or after
the first GFS cycle initialization. If the date is before, the
maximum forecast hour is adjusted to the maximum hour relative to
the forecast verification date and the first GFS cycle initialization.
This feature was added to cut down on METplus calls being done
on data that don't exist.
Refs: #315
commit dfec5816add3c56721360a418ec9f3459cfd4d8c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 15:27:56 2021 +0000
Update UFS_UTILS hash to 9d9dd23e37a51fcc5ff6b7499b834c85ab32e5f3
Refs: #164
commit be564bb85eeefbb1699992e0ed4f0705e4e2ee24
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Thu Apr 22 11:22:02 2021 -0400
changes on build_fv3.sh and symlinks to optical data files instead of cp
commit 15c6619c6e211eb67ca6aa5c995e4a3bf4cf586f
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 14:03:46 2021 +0000
Adjust C768 fcst thread value for reduced node usage
- change C768 nth_fv3_gfs value from 7 to 2
Refs: #164
commit ece41632a76e697184a46bb2a428c35ccdf08305
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 13:58:22 2021 +0000
Add separate gfs resource variables to fcst in config.resources
Refs: #164
commit 00c18b5e341d601fd83da2f9df2ac928e8dcf7c8
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:44:13 2021 +0000
Update FIX_DIR paths in link_fv3gfs.sh
- change platform FIX_DIR paths from fix_nco_gfsv16 set to developmental fix set for v17+
Refs: #164
commit b6c392c7569ed909d6b0b27c0f6a4f828b7acdfd
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:40:25 2021 +0000
Set DO_WAVE=NO in config.base
- set default DO_WAVE setting to NO in config.base.emc.dyn
- turn off waves until hpc-stack for WW3 execs build is ready
Refs: #164
commit 2b703d335b8e3e97c9764bd60d87188ed11938fd
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:17:28 2021 +0000
Set WAFS checkout to be optional with -o flag
- add checkout_wafs to -o flag settings
Refs: #164
commit 305bf5e0fb3c665cf71f10023feed1a121be329b
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:01:04 2021 +0000
Update Externals.cfg to match checkout.sh versions
Refs: #164
commit 3cc02d507df48e2b9f99163d737123e5b5c716c0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 12:52:46 2021 +0000
Update GLDAS and UFS_UTILS checkouts
- update GLDAS checkout to gldas_gfsv16_release.v1.15.0 tag; corrects build on Orion
- update UFS_UTILS checkout to 4f44bf89 hash of develop (supports stack)
Refs: #164
commit 9d733f87203ebd2298d22c0ac9491520bae60983
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 12:15:13 2021 +0000
Add support for separate gfs thread values
- nth_fv3_gfs was added to configs, add support to setup scripts for resource calculations
Refs: #164
commit 4c64dce093fb3925b40b2a3f0b57fd196b14d92c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 12:14:21 2021 +0000
Reduce npe_wav_gfs from 440 to 140 to dev users
Refs: #164
commit 35c16e3aafc3addd3d24225880b5319332cca97a
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 12:12:16 2021 +0000
Add wgrib2 module load to module_base.wcoss_dell_p3
- add wgrib2/2.0.8 module load
- add setting of WGRIB2 to equal wgrib2
Refs: #164
commit 6b6b9ed3949c2e3ca3d697ffd3bb3a65ec728744
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Apr 12 17:13:06 2021 +0000
getic and init job updates for v16 in ops
- update GFSv16 implementation cycle in config if-blocks to be 2021032100
- add note about missing ops data on HPSS for 2021032106 cycle
- add run_v16.chgres.sh as default RUNICSH script
Refs: #178
commit 48ea7abd9fe4cfd0e774c92383948c9bb477a905
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Apr 12 17:10:59 2021 +0000
Low resolution resource adjustments
- C96, C192, and C384 config.fv3 resource updates for successful jobs
- provided by Jun Wang and Fanglin Yang
- tested on Hera
Refs: #178
commit b55ecf8e5ae761ddc8e3897411aceb4e0529e106
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Apr 6 15:34:05 2021 +0000
Remove Tide/Gyre reference from machine-setup.sh
Refs: #164
commit ab488f1aeb383d84a67b37e47a888d58662cf82f
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Apr 6 15:33:11 2021 +0000
Update OznMonBuild, RadMonBuild and module_base for hpc-stack on WCOSS-Dell
Refs: #164
commit 384440ced59c18af777f7f9bb30016f3e71a1c31
Merge: 2f6d7ab0 fc727f40
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 22 17:15:27 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
* origin/develop:
Add two WAFS sorc folders to .gitignore
Remove unneeded builds from build_all and partial build
Delete unneeded files after workflow utils build was converted to cmake
Remove global_chgres exec symlink from link_fv3gfs.sh
Refs: #164
commit f35e6090bcf097355e691266bbc12ace6591c150
Merge: 5c77500b fc727f40
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Mar 22 15:48:55 2021 +0000
Merge remote-tracking branch 'upstream/develop' into issue178
* upstream/develop:
Add two WAFS sorc folders to .gitignore
Remove unneeded builds from build_all and partial build
Delete unneeded files after workflow utils build was converted to cmake
Refs: #178
commit 5c77500bc4742a840a26f05aedffe2aca3e15ec7
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Mar 22 15:44:40 2021 +0000
Add exit in init.sh when C768 v16 warm starts detected
Exit init.sh and init job when high res C768 v16 warm starts are detected
and running chgres_cube is not needed.
Refs: #178
commit fc727f405afd4948ee99be1c13c9f2541405cc8b
Merge: 258b342d 7582541c
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Mar 10 16:40:18 2021 -0500
Merge pull request #288 from NOAA-EMC/feature/issue272
Post-cmake cleanup and decommissioning
commit 7582541c3b4ec182756ad1fa9164c21e0345f058
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Mar 10 20:08:43 2021 +0000
Add two WAFS sorc folders to .gitignore
- two missing WAFS symlinks were added to link_fv3gfs.sh in prior
commit; include them in gitignore file now
Refs: #272
commit 4f7243bc68164faf0008893467c5a2ea53d216ae
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 18:07:23 2021 +0000
Remove global_chgres exec from link_fv3gfs.sh; no longer exists from UFS_UTILS
Refs: #178
commit fcd720edef1fe242c27d543f445bb3b4ee4fe9ec
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 17:54:51 2021 +0000
Remove unneeded UFS_UTILS symlinks in link_fv3gfs.sh
Refs: #178
commit 2f6d7ab06b3be6eaedb3406efca77ded61ef7aca
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Mar 9 17:41:14 2021 +0000
Module base updates for WCOSS-Dell, Hera, and Orion
- add zlib module load
- reorder wgrib2, hdf5, and netcdf module loads to accommodate module dependencies
Refs: #164
commit 1285d803fd402945ebc03eb42eb8bfa3d2aa10da
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Mar 9 10:59:09 2021 -0600
Update GSI checkout to clone GSI-master @ 9c1fc15
Refs: #164
commit 14736c8320bec43651208950c16ea85ae2372985
Merge: e6a9e576 bea02f8a
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 16:56:42 2021 +0000
Merge branch 'feature/hpc-stack' of https://github.com/NOAA-EMC/global-workflow into feature/hpc-stack
* 'feature/hpc-stack' of https://github.com/NOAA-EMC/global-workflow:
Correct if-block syntax in config.postsnd and config.wavepostbndpnt after testing setup scripts
FHMAX_WAV_IBP variable check for wavepostbndpnt job
Bufr sounding job update
Add config.resources.nco.static
ecflow forecast job resource updates from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.5
Add missing symlinks for WAFS source code folders
Update EMC_gfs_wafs tag to gfs_wafs.v6.0.19
Remove KEEPDATA from config.base.nco.static
Pull in config changes from NCO v16.0.7 install
Pull in workflow changes from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.4
ecFlow resource adjustments from NCO for forecast and post jobs
issue #257 shorten run time on Mars Dell1 file system
commit e6a9e576744a1c245148bdc4b967a5674c9416b5
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 16:55:41 2021 +0000
Remove UFS_UTILS symlinks no longer needed in link_fv3gfs.sh
Refs: #164
commit 370e81474ce8f4076b0853b37de7da9c65d65c88
Merge: 364e46ff 258b342d
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 16:14:40 2021 +0000
Merge remote-tracking branch 'upstream/develop' into issue178
* upstream/develop:
Correct if-block syntax in config.postsnd and config.wavepostbndpnt after testing setup scripts
FHMAX_WAV_IBP variable check for wavepostbndpnt job
Bufr sounding job update
Add config.resources.nco.static
ecflow forecast job resource updates from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.5
Add missing symlinks for WAFS source code folders
Update EMC_gfs_wafs tag to gfs_wafs.v6.0.19
Remove KEEPDATA from config.base.nco.static
Pull in config changes from NCO v16.0.7 install
Pull in workflow changes from NCO v16.0.7 install
remove flags that were not present in Makefiles
update jasper to 2.x.25. remove compiler flag in fv3nc2nemsio
Update EMC_verif-global tag to verif_global_v1.13.4
another use of _d where an _4 is needed
Adjust how target is set for build_workflow_utils
Add workflow_utils to build_all and link scripts
copy/paste error from enkf_chgres_recenter.fd to enkf_chgres_recenter_nc.fd. When going from nemsio to netcdf, the linking of ip, sp and w3nco changed from _d to _4.
update .gitignore to exclude build and install directories as well as compiled files. bugfix in build_workflow_utils.sh hack. nceplibs-ncio now creates the module ncio and not fv3gfs_ncio.
Update EMC_verif-global tag to verif_global_v1.13.4
add cmake build capability for workflow utilities
ecFlow resource adjustments from NCO for forecast and post jobs
issue #257 shorten run time on Mars Dell1 file system
Refs: #178
commit 364e46ff2acabed7bd9f6cb07ca10aa19033a980
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Mar 9 16:08:57 2021 +0000
Add pull of gdas wave restart files in getic.sh if DO_WAVE=YES
Refs: #178
commit bea02f8a6fc496794471e57aa75e030092027bd5
Merge: fd50508f 258b342d
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 14:02:51 2021 -0600
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
* origin/develop:
Correct if-block syntax in config.postsnd and config.wavepostbndpnt after testing setup scripts
FHMAX_WAV_IBP variable check for wavepostbndpnt job
Bufr sounding job update
Add config.resources.nco.static
ecflow forecast job resource updates from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.5
Add missing symlinks for WAFS source code folders
Update EMC_gfs_wafs tag to gfs_wafs.v6.0.19
Remove KEEPDATA from config.base.nco.static
Pull in config changes from NCO v16.0.7 install
Pull in workflow changes from NCO v16.0.7 install
Update EMC_verif-global tag to verif_global_v1.13.4
ecFlow resource adjustments from NCO for forecast and post jobs
issue #257 shorten run time on Mars Dell1 file system
Refs: #164
commit e9e1f3ba976f053c6738d95d6de673a065d293c1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 19:54:24 2021 +0000
Remove unneeded builds from build_all and partial build
- remove build sections in build_all.sh that ran builds that are now
consolidated into build_workflow_utils.sh
- remove build options in partial build script and config that are
now consolidated into workflow_utils build
Refs: #272
commit 26fa8c355c241a64d19097da3caa54cba0e46b77
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 19:38:45 2021 +0000
Delete unneeded files after workflow utils build was converted to cmake
- remove modulefiles that are no longer needed; consolidated into new workflow_utils.* modulefiles
- remove build scripts that are no longer needed; consolidated into new build_workflow_utils.sh script
Refs: #272
commit 258b342d5b6535cf87973105d770a63f4245d44a
Merge: f6aa6939 729631d6
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 12:59:46 2021 -0500
Merge pull request #282 from NOAA-EMC/feature/issue238
GFSv16.0.7 changes from NCO
commit 729631d66f72ba8a3929e4927129d000879c9a1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 17:40:17 2021 +0000
Correct if-block syntax in config.postsnd and config.wavepostbndpnt after testing setup scripts
Refs: #238
commit a1edf0de4deaccbf7f77f2fb4d24d1ca96c26171
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 17:21:05 2021 +0000
FHMAX_WAV_IBP variable check for wavepostbndpnt job
- add variable override in exgfs_wave_post_bndpnt.sh for FHMAX_WAV_IBP
- add check to config.wavepostbndpnt for when FHMAX_GFS is less than FHMAX_WAV_IBP;
set FHMAX_WAV_IBP to equal FHMAX_GFS when shorter gfs forecast than 180hrs; resolves
runtime error with wavepostbndpnt job waiting for forecast output that will never arrive
Refs: #238
commit ac76613f33f7d196a1d04972bc7c975d579da571
Merge: 0f97ccda f6aa6939
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon Mar 8 10:09:47 2021 -0600
Merge remote-tracking branch 'upstream/develop' into merra2
* upstream/develop:
remove flags that were not present in Makefiles
update jasper to 2.x.25. remove compiler flag in fv3nc2nemsio
Update EMC_verif-global tag to verif_global_v1.13.4
another use of _d where an _4 is needed
Adjust how target is set for build_workflow_utils
Add workflow_utils to build_all and link scripts
copy/paste error from enkf_chgres_recenter.fd to enkf_chgres_recenter_nc.fd. When going from nemsio to netcdf, the linking of ip, sp and w3nco changed from _d to _4.
update .gitignore to exclude build and install directories as well as compiled files. bugfix in build_workflow_utils.sh hack. nceplibs-ncio now creates the module ncio and not fv3gfs_ncio.
add cmake build capability for workflow utilities
Update Fit2Obs tag to newm.1.3 for bugfix
Update Fit2Obs tag to newm.1.3 for bugfix
Update EMC_verif-global tag for Hera bug
Pull in nwpara/gfsv16.0.6 updates for parse-storm-type.pl
HOTFIX: Update EMC_verif-global tag for Hera bug
Issue #1 and issue #238 - update Externals.cfg to match checkout.sh updates for v16.0.6
move errchk definition from script to job for wave prdgen and gempak
adding definition of errchk which was undefined in these scripts
Issue #179 and issue #243 - update Fit2Obs to newm.1.2 tag and correct COMROOT path for Hera
HOTFIX: Issue #241 - update EMC_verif-global tag to remove use of /tmp space
Issue #1 and issue #233 - update GLDAS tag to gldas_gfsv16_release.v1.13.0
Issue #1 and issue #241 - update EMC_verif-global tag
Issue #1 and issue #238 - remove ak_10m grid from config.wave and update checkout.sh tags for ufs-weather-model and EMC_gfs_wafs
Issue #179 - update to config.vrfy for Fit2Obs tag which supports Orion
Issue #1 and issue #226 - update UPP tag to upp_gfsv16_release.v1.1.3 in Externals.cfg
Issue #1 and issue #226 - update UPP tag to upp_gfsv16_release.v1.1.3
Issue #233 - remove unnecessary extra space in tag line for gldas
Issue #233 - update GLDAS tag to gldas_gfsv16_release.v1.13.0
Issue #1 and issue #226 - update exgfs_atmos_grib2_special_npoess.sh for dbn_alert
modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug.
issue #227 reducing output bufr files to 64 levels per NCO request
issue #227 reducing output bufr files to 64 levels per NCO request
Issue #1: update ecflow to be consistent with NCO's gfs.v16.0.4 and update checkout to bring in new UPP tag (see issue #226)
Upaded ush script scale_dec.sh
Updated scripts gfs_v16.0
Issue #1 and issue #220 - set C192/C96/C48 npe_eobs back to dev values for develop
Issue #1 - add grib_util module load to several analysis ecflow scripts
Issue #189 - update ufs-weather-model hash
Issue #201 - workaround for failing post000 job before hpc-stack solution
Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change
Issue #1 - correct gridded wave parm files for v16.0.3
Issue #1 - changes from NCO for GFSv16.0.3
Issue #1 - update Externals.cfg with final tags for GFSv16.0.2
Fixes for issue #202 (FINDDATE) and issue #208 (postsnd.sh permissions)
Issue #1 - correct permissions on jobs/rocoto/postsnd.sh
Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file
Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively
Script alert updates from NCO for wave downstream
Add override for COMIN_WAV_RTOFS in emc mode for waveprep job
Issue #197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO).
modified: JGLOBAL_FORECAST
modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments.
modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters
modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16
modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix
modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations
Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected.
create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository
update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle
updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr
commit b644f792bbb939d6ab25957b93f812aa02b497a9
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon Mar 8 15:07:34 2021 +0000
Bufr sounding job update
- set DO_BUFRSND to NO by default
- in config.postsnd, if FHMAX_GFS is less than 180 then set DO_BUFRSND to FHMAX_GFS
Refs: #238
commit 86b0345a550a7128fd6420befcb793a94411e4db
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon Mar 8 14:09:40 2021 +0000
Add pull of IAU increment files off HPSS for free-forecast
Refs: #178
commit efdf917a843cc301a2fe7d5386aea1e29dd02c46
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Fri Mar 5 21:29:22 2021 +0000
Update in wave prep script and add ability to pull warm starts
- Update getic job to detect warm start config info and pull warm start RESTART
files off HPSS and place in ROTDIR; just for retro ICs, will add ops after implementation
- Add check to JGLOBAL_WAVE_PREP for prior cycle rtofs ROTDIR symlink;
normally cycled mode would have already created this during prior cycle
so added check for use in free-forecast mode
Refs: #178
commit 65fce4ce9b2d7e63a0bd038fff1a206f8b4a5815
Merge: 084cb6aa 9027452b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Fri Mar 5 17:13:37 2021 +0000
Merge remote-tracking branch 'origin/release/gfsv16.0.0' into feature/issue238
* origin/release/gfsv16.0.0:
Add config.resources.nco.static
ecflow forecast job resource updates from NCO v16.0.7 install
Refs: #238
commit be0ed38a53d2422923ccd5380d610785e61deafa
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Mar 4 18:06:24 2021 +0000
Consolidate/cleanup init config and script
Refs: #178
commit d32199cd58329b4b2c9c5c3e84e7d8d0801305e0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Mar 4 17:43:58 2021 +0000
Move getic/init settings from scripts to configs
- consolidate RETRO variable in config.getic
- move configuration settings from getic/init scripts to configs
- add dependency to setup_workflow_fcstonly.py
- add getic and init to task list at top of config.resources
Refs: #178
commit 084cb6aacc0c65440c5fecd3010a1b691ee98d87
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Mar 4 15:22:42 2021 +0000
Update EMC_verif-global tag to verif_global_v1.13.5
Refs: #238,#279
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* updated dust AOD lookup table * bug fixed for aerosol aod
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Squashed commit of the following:
commit a0e23e254c7c881b20d66c1c53cd36de509e6d69
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 1 10:50:39 2022 -0500
Specify memory for init job (#669)
The init job has been failing on HPC using slurm due to out-of-memory errors. Now the init job specifies the amount of memory needed.
Fixes #631
commit 6874e8939211fdc07143450bfd1b6a2863172e10
Author: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
Date: Fri Feb 25 16:39:45 2022 -0500
Cleanup of utils directory (#660)
Removes all of the old, unused GSM scripts and code from the utils directory. Those codes that might still be used have been moved to a new GSM-utils repo.
Fixes #618
commit e3d64abc9c02aecb9d5d38755f6524bf9e277e66
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 24 22:49:45 2022 -0500
Fix bug with partition_batch on WCOSS (#668)
partition_batch was not being defined for WCOSS machines, but was
being used in a substitution for config.base.
Fixes #667
commit 9d75d8d78037c7a74d1a9c61a88d9d6a7e9b3be9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Mon Feb 21 02:10:00 2022 -0500
Split output filetype variable into atm and sfc (#602)
The determination of the FV3 output filetype was a bit unwieldy as it
contained two different settings (one for the atmosphere and one for
the surface) that were not necessarily changed at the same time. They
were also being determined in a different location than other settings
based on the model resolution.
Now the old OUTPUT_FILETYPES variable has been split into two different
variables, OUTPUT_FILETYPES_ATM and OUTPUT_FILETYPES_SFC. The determi-
nation was also moved into the config.fv3 file, where other resolution-
dependent computational settings are set.
This has resulted in some functional change on WCOSS Dell, as the EnKF
was using different chunking settings and never used parallel output
for the surface likely because wasn't being run at a low enough resolu-
tion to consider it. However, there is no reason to believe the two
forecast modes should have different chunk or output settings. So, I've
used the EnKF chunking settings and the free forecast switchover point
for the surface output mode.
The new filetype settings are now also divorced from the OUTPUT_FILE
setting. However, that setting will soon be unnecessary as nemsio
is removed from the code as an option (see Issue #601).
Fixes #600
Refs #601
commit cb8b5adf16200e7b01b8236a960efce5b6d8ce5d
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 17 15:55:24 2022 -0500
Correct MODE comparisons for forecast only (#658)
When the setup_expt scripts were combined, the forecast mode became a mandatory
argument. The value of this option is then directly used for the MODE variable,
but the argument name (forecast-only) does not match what was previously used
for MODE in the forecast-only script (free) and some scripts were still testing
against the old value instead of the new one. Those comparisons have now been
updated to use the new MODE name.
Fixes #657
commit f8867d3f0b1f3b5d238dced412996c56e30d31a1
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Thu Feb 10 20:23:54 2022 -0500
Add LOCALARCH option (#628)
Adds the option to archive output locally during archive jobs. This is intended for systems that do not have access to HPSS (e.g. Orion and soon S4), but can be used on any machine. To enable, the LOCALARCH setting in config.base should be set to "YES" (HPSSARCH must be "NO"). When enabled, the tarballs normally created on HPSS will instead be created in the local directory specified by $ATARDIR.
Defaults have been added to setup_expt.py to point to a local ATARDIR and LOCALARCH (currently =NO).
Fixes #624.
commit 2950c7b97f99341caa738526138022987f665627
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Feb 10 18:07:43 2022 -0500
Turn on fractional grid by default for uncoupled forecasts (#638)
Updates input.nml so that there is more consistency between the cpl and standalone atm input.nml. In particular this addresses the fact that frac_grid was only being set if cpl was true.
Fixes #571
commit 64b1c1e5ce37fba48dd717bd11356a6f57d9def4
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Feb 9 17:02:39 2022 -0500
Specify warm start as .true. or .false. (#644)
Corrects the assignment of EXP_WARM_START to either .true. or .false. depending on the value passed to setup_expt.py via `--start`.
Fixes #643
commit e537f0cecabc8e16e26b14e606558de906b19e3f
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 23:33:21 2022 -0500
Archive TC tracking logs if produced (#627)
The archive job was failing if there were no tropical cyclone files (such as when there are no cyclones). This adds a check for the TC tracking logs in case they are not produced to prevent the gfsarch job from failing on cycles when there were no TCs to track.
Fixes #625.
commit 32f93becde5ffa07c162252b95417845f2ab5159
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:59:37 2022 -0500
Fix separate threading for GFS and GDAS forecasts. (#621)
Fix separate threading options for GDAS and GFS forecasts (#610). This is performed by keeping nth_fcst_gfs separate from nth_fcst and declaring the new variable npe_node_fcst_gfs.
Fixes #610
commit 9bb09a92c55d4534feca5d521fbbd1c664730317
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:58:05 2022 -0500
Updated the RadMon and OznMon links. #596 (#597)
commit 97ebc4d4e6483b135468d85cd9ed974f88955914
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Thu Feb 3 02:56:34 2022 -0500
Unify `setup_expt.py` and `setup_expt_fcstonly.py` (#537)
`setup_expt.py` and `setup_expt_fcstonly.py` are unified under the former name.
The user is now required to provide a `mode` as the first positional argument to `setup.py`. Valid options are `cycled` and `forecast-only`.
```
❯ python3 setup_expt.py -h
usage: setup_expt.py [-h] {cycled,forecast-only} ...
Setup files and directories to start a GFS parallel. Create EXPDIR, copy config files. Create COMROT experiment directory structure, link
initial condition files from $ICSDIR to $COMROT
positional arguments:
{cycled,forecast-only}
cycled arguments for cycled mode
forecast-only arguments for forecast-only mode
optional arguments:
-h, --help show this help message and exit
```
Upon choosing one of these modes, options specific to the mode can be realized as follows for the `forecast-only` and `cycled` modes respectively.
```
❯ python3 setup_expt.py forecast-only -h feature/unify-setups
usage: setup_expt.py forecast-only [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--app {ATM,ATMW,S2S,S2SW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--app {ATM,ATMW,S2S,S2SW}
UFS application
```
```
❯ python3 setup_expt.py cycled -h feature/unify-setups
usage: setup_expt.py cycled [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--resens RESENS] [--nens NENS] [--app {ATM,ATMW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--resens RESENS resolution of the ensemble model forecast
--nens NENS number of ensemble members
--app {ATM,ATMW} UFS application
```
Note, `cycled` mode presents some extra options e.g. `nens` as well as a reduced list of the UFS weather model applications.
The functionality of `--icsdir` had been broken for cycled and was hard-coded in free forecast. The functionality has now been repaired for cycled. If you provide one, $COMROT will be populated with appropriate links. If none is specified, no links will be created in $COMROT. In coupled mode free-forecast, ICs are copied *to* icsdir from the central maintained prototype location. Coupled users will now need to set this explicitly. For non-coupled forecast-only, this setting currently does nothing.
The default value for `--configdir` has been updated to the appropriate location in the workflow. Most users will no longer need to set it unless they want to point to a different config source.
The default values for `--comrot` and `--expdir` are updated from None to $HOME to facilitate offline testing of workflow creation.
There are some irrelevant sections such as `gfs_cyc` in forecast-only that is still preserved in this PR. It will be cleaned up in subsequent PR's.
Another unnecessary complication is the argument of `--start`. The logic presented here would ideally be selected at runtime based on the type of IC's populated in comrot. It is left unchanged.
commit d7319f19aceca6ae6d7ce9b06c6eb731832d1de1
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:19:43 2022 -0500
Stop archiving gfsarch.log as it is being written (#581)
The gfs archive job was failing because it was attempting to archive its own log file into gfsa.tar while it was being written. To exclude that file pattern, bash extended globbing is turned on, which allows the use of a negating group.
Fixes: #558
commit 1b300dbf98eccdf03117b3795a2d8da3310a6126
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:18:55 2022 -0500
Fix build on non-WCOSS2 machines (#612)
The UFS_UTILS and GLDAS versions are updated to correct build problems on development machines. Each had been using a beta version of ESMF that was removed from the hpc-stack installation without warning. Additionally, GLDAS had introduced bugs into their build scripts during the WCOSS2 port. These issues are now all corrected in the new versions.
Also updates the UFS_UTILS repository to its new location under UFS instead of EMC.
Fixes #476, #561
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb702 e5cd63693
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11ef 0740b5b6c
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74bb fc48af56d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013decd ce66c74bb
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea52 7a166da9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2c 5c042e087
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4c cfca8bb2c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f55583 fba8cef5b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d11 e08f55583
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb39 e08f55583
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f1 b2879fe9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376bab e09a398f1
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit b2879fe9f90def631047f533db2144858d827023
Merge: 68b9157bd a8ed770d9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 10:07:05 2021 -0400
Merge pull request #326 from NOAA-EMC/release/gfsv16.1.1
GFSv16.1.1
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc1 6bad810bc
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77afd e3fcfebc1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed39 e3fcfebc1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
udate config.base.emc.dyn
high resolution MERRA2 data used
fixed a bug related to orion
added merra2 input and update diag_table
merra2 workflow for orion
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
commit 4641c5d206a95e0e66276fa86d46ecd580213fd5
Merge: eff8a1258 e3fcfebc1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 19 14:51:19 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit e3fcfebc1ff9c9f9ceda7b775de0c34117de6459
Merge: 95e0dffea fa5d1e2ba
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 19 10:02:19 2021 -0400
Merge pull request #254 from AnningCheng-NOAA/merra2
Addition of support for MERRA2
commit fa5d1e2ba242a08e26cb7bac8c68b700a83d1d60
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue May 18 10:41:16 2021 -0400
change fv3gfs checkout head
commit 283c4a044847bbadd0cef46e14dde4de97abe986
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 17 15:56:56 2021 -0400
fixed a compilation error, NEMs/exe existing, in hera
commit 6b574160f94329754677e7f4541ab07c44185bb0
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Fri May 14 13:44:18 2021 +0000
build_fv3.sh with ATM
commit dfc8aa9a2cf5370fff38520d2a28f3960be3b583
Merge: bf5d11063 95e0dffea
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed May 12 20:11:44 2021 +0000
Merge remote-tracking branch 'upstream/develop' into merra2
commit eff8a1258aa70c061fe69697388f8914935726ee
Merge: b1ad0b963 95e0dffea
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 12 19:15:17 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit 95e0dffea435af17be9150fcd0c842763768b45f
Merge: fc727f405 dd4d18790
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 12 14:51:10 2021 -0400
Merge pull request #323 from NOAA-EMC/sync/operations_v16.0.9
Bring operations branch v16.0.9 changes into develop
commit dd4d1879093516a7950c9e0e59f6e44e462199f6
Merge: fc727f405 68b9157bd
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 10 16:40:13 2021 +0000
Merge remote-tracking branch 'origin/operations' into sync/operations_v16.0.9
* origin/operations:
bugfix for not removing last point from list in wave post pnt jobs
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
Refs: #309
commit 8def77afd4a9f1cd6cdca42c956bc7ebf675a58d
Merge: c6e2a96e8 d46e8cf49
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 10 11:45:02 2021 -0400
Merge pull request #322 from JessicaMeixner-NOAA/hpcstackww3
Updates for ww3 pre and post exec builds for hpc-stack
commit d46e8cf49aff0dbf72e457f1177e10e6f50252a6
Author: Jessica Meixner <Jessica.Meixner@noaa.gov>
Date: Mon May 10 15:31:56 2021 +0000
update for ww3_pre/post build:
-- remove ww3 specific module files
-- updated module base files to be in sync with ufs-weather-model
except that jasper is a more recent version which is needed for ww3_grib
-- added extra ww3 execs needed for this branch
-- added ww3prepost build to build_all and partial build
commit c6e2a96e86611cce00455609d9be803d580e7bc0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:30:13 2021 +0000
Change fix file linking to scan for possible subfolders in set
- instead of providing subfolder names, scan for subfolders in FIX_DIR path
and then create symlinks based on existing subfolders in set
- will not have to keep updating list of subfolders now
Refs: #164
commit aa1d1e9ca1d8521ef22e1bdb654d4a70e7b1e29e
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:27:13 2021 +0000
Change CCPP_SUITE from FV3_GFS_v16beta to FV3_GFS_v16
- newer ufs-weather-model hash supports FV3_GFS_v16 suite
Refs: #164
commit a8ed770d9c1e8614c5477d0129d6eaf5fe4e2085
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:32:36 2021 +0000
Companion update to Externals.cfg for WAFS tag update to gfs_wafs.v6.0.22
Refs: #1,#321
commit 68d9b5b5ff072b1f62131a9f7495c33c14c4a850
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:28:17 2021 +0000
WAFS tag update to gfs_wafs.v6.0.22 for bug fix
Refs: #1,#321
commit 68b9157bd59278dc07369d316999d3c8485ebf7c
Merge: 1f5af6283 97fe99096
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 5 10:50:42 2021 -0400
Merge pull request #306 from NOAA-EMC/release/gfsv16.0.0_to_ops
GFSv16.0.9
commit 1aea3ee393c99d4f76556fbbdbebc43f629558c2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:30:06 2021 +0000
Add build script and modulefiles for WW3 build
- WW3 execs no longer built by FV3 build, need separate build now
- add new build_ww3prepost.sh script for building WW3 execs in ufs-weather-model checkout
- add modulefiles for WCOSS-Dell, Hera, and Orion
Refs: #164
commit 214431a2c04f6e685e966810621fc2fae771d2f5
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:26:00 2021 +0000
Update WAFS execs to include .x
- update WAFS exec names in link_fv3gfs.sh to include ".x" extension that was added with new version
Refs: #164
commit eb1613764794a35d165e55423682ed592b2aaacb
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:22:06 2021 +0000
ufs-weather-model hash update for WW3 support with hpc-stack
- update ufs-weather-model hash to 554aedcd63e4a7c5012570406132eaf76e249ca9
- update build_fv3.sh for new compile arguments for CCPP/WW3 build
Refs: #164
commit b1ad0b96328a54112ecc13ff4b71dcc08556a8c1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 5 14:13:58 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.1
Refs: #315
commit c206e8d2606f14ee6188740f881673ff512b866b
Author: Mallory Row <mallory.row@noaa.gov>
Date: Mon May 3 19:16:42 2021 +0000
Fix typo in config.metp
There was a typo in the grid-to-obs METviewer related config variables.
The variables started with "g2g1" instead of "g2o1".
Refs: #315
commit f9013decd5af75f66eda619175bacc7549f4746a
Author: Brian Curtis <Brian.Curtis@noaa.gov>
Date: Mon May 3 14:37:13 2021 -0400
Files to test for python3 compatibility
commit 0b9607711900e0da0de3d3dc1af91cc4dc9dd04d
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 12:31:01 2021 -0400
Update v16.1 release notes with wave script fix
Refs: #301
commit fda26e9010ef59f69cd378c3092bdc82e57e4ec2
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date: Mon May 3 12:08:12 2021 -0400
Update config.base.nco.static
Change HOMEobsproc_prep and HOMEobsproc_network to point at NCO installation of these packages.
commit f9a6dd71ef7d580d6b83f50eb53814a06a944577
Merge: 173bb4814 97fe99096
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 11:55:09 2021 -0400
Merge branch 'release/gfsv16.0.0_to_ops' into release/gfsv16.1
Include wave fixes in v16.1
Refs: #301
commit 173bb4814ed2d2bc6e3436263f55c199f8dc8721
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 11:52:42 2021 -0400
Update v16.1 release notes for wave fixes
Refs: #301
commit 858f216330d7ab71137afe6331f6576fec413aee
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:19:56 2021 +0000
Update EMC_post, UFS_UTILS, EMC_gfs_wafs versions in Externals.cfg
Refs: #164
commit 6ce83363726ece6dbd34719430dd44f5e63bbc3c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:14:54 2021 +0000
Component updates for UPP, WAFS, UFS_UTILS
- new tag in checkout for UFS_UTILS to use hpc/1.1.0
- new hash in checkout for UPP/EMC_post to support GTG and GTG code copy fix
- new hash in checkout for WAFS/EMC_gfs_wafs to support hpc-stack
- build script update for WAFS (cmake/stack)
- WAFS GCIP config update to fix runtime error
Refs: #164
commit 709095709ca60498d05ea0f519b494501e1ecdf2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:11:51 2021 +0000
Update util_shared to 1.3.0 on WCOSS-Dell
- version changed in production for v16.0.9 footer fix
Refs: #164
commit bf5d110632fc67653441e6830bfdcdddda906706
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 3 10:53:37 2021 -0400
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
commit 97fe990968955486fe2b7f3035c9d9423cef5e3e
Merge: c582db288 f0fd3d410
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 3 09:15:15 2021 -0400
Merge pull request #318 from JessicaMeixner-NOAA/v16/bugforpnt
Bug fix for missing buoy in wave post point
commit f0fd3d4108debaa61f000ac700fd90904f1b600b
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date: Fri Apr 30 17:56:34 2021 +0000
bugfix for not removing last point from list in wave post pnt jobs
commit fb47a5a0f7391f670461b00eaf324c3b0102ef1f
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Apr 28 17:50:15 2021 +0000
Update TC_tracker version in config.vrfy
- new TC_tracker.v1.1.15.4 was made available by Jiayi Peng
- new version supports hpc-stack on supported platforms
- installed locally on WCOSS-Dells, Hera, and Orion
Refs: #164
commit 587ac0c914430d5b887327d7c566c452d2eace62
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed Apr 28 10:36:49 2021 -0400
changes added in link_fv3gfs for fix_aer
commit 48690cd07ceeb90c6808346a04a31a6166505c86
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed Apr 28 14:00:46 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.0
commit 1d0e0c29979101b451f1fda265af3f9a716bb9de
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Apr 27 19:33:09 2021 +0000
Reverting resource related changes
- will commit resource adjustments separately
Refs: #164
commit 101905ce4d92a544d353700b0acdc137aa61b088
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue Apr 27 14:15:59 2021 -0400
changed fix dir for link_fv3gfs
commit 3271bac5b2072bfa2c0c0d229f050b647cd28925
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Tue Apr 27 10:08:54 2021 -0400
Update Externals.cfg and release notes for v16.1
Updated Externals.cfg GSI tag to gfsda.v16.1.0. Added sections in the
release notes to explicitly say no changes to parm/config and scripts.
Refs: #301
commit 31389bc23b89b1713712da17c8f226b649286b40
Merge: b1e924cd4 c582db288
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Tue Apr 27 08:31:41 2021 -0400
Merge branch 'release/gfsv16.0.0_to_ops' into release/gfsv16.1
This update brings in the wave foot fix for GFSv16.0.9.
Refs: #301
commit b1e924cd44eba056443cb2a6789b1dc8040a02e1
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Tue Apr 27 07:31:44 2021 -0400
Change GSI tag to gfsda.v16.1.0
The GSI tag has been updated for the v16.1 implementation. This
implementation turns on commercial RO data from GeoOptics. See
release notes docs/Release_Notes.gfs.v16.1.0.txt in the global-workflow
and release notes doc/Release_Notes.gfsda.v16.1.0.txt in the GSI for
details.
Refs: #301
commit 3142a8219c74b7b33a2bee1aed4ed7acd34ed0dc
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon Apr 26 16:59:43 2021 -0400
Add Release Notes for GFSv16.1
Added the file docs/Release_Notes.gfs.v16.1.0.txt to release branch
release/gfsv16.1.
Refs: #301
commit 7cd6e0e3000a47b39fa0c7e75ad66150e96385d8
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 14:44:03 2021 +0000
Fix setting of 'SDATE_GFS' for free forecast XML
In the workflow XML for free forecasts there is no SDATE_GFS
variable. The 'SDATE_GFS' variable was changed to be set to the
value of 'SDATE'.
Refs: #315
commit d34b99d4e3d369b784fd9d2c639a0bddd1bbfc0c
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 12:59:51 2021 +0000
Clean up and add new settings in metp.sh
SDATE_GFS was added into the script preamble following the
addition of the variable being added as a rocoto exported
environment variable for metp tasks.
Config.vrfy was removed from the list of relevant configs
to source.
Variables CDATEm1 and PDYm1 were removed and replaced with
VDATE. VDATE is the verification date to be done by the metp
tasks based on VRFYBACK_HRS set in config.metp.
Lines were added to catch the exit status of VERIFGLOBAL_SH
and to exit if not succesfully run so it can be caught by
rocoto.
Refs: #315
commit 998f1a454427dedd46bb20b36e381bedbdf3e349
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 12:49:38 2021 +0000
Revamp of config.metp
Following the EMC_verif-global configuration remake, config.metp
has been revamped to support the new configuration settings.
Refs: #315
commit 6a01ae405202b8984fe8efa73573d7fdba2b74d2
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu Apr 22 17:17:14 2021 +0000
Add 'SDATE_GFS' rocoto env var for metp tasks
The connector script between EMC_verif-global and global-workflow
run_verif_global_in_global_workflow.sh (housed in EMC_verif-global)
contains a new feature that checks the maximum forecast hour for
verification is the hour's initialization date is equal to or after
the first GFS cycle initialization. If the date is before, the
maximum forecast hour is adjusted to the maximum hour relative to
the forecast verification date and the first GFS cycle initialization.
This feature was added to cut down on METplus calls being done
on data that don't exist.
Refs: #315
commit dfec5816add3c56721360a418ec9f3459cfd4d8c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 15:27:56 2021 +0000
Update UFS_UTILS hash to 9d9dd23e37a51fcc5ff6b7499b834c85ab32e5f3
Refs: #164
commit be564bb85eeefbb1699992e0ed4f0705e4e2ee24
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Thu Apr 22 11:22:02 2021 -0400
changes on build_fv3.sh and symlinks to optical data files instead of cp
commit 15c6619c6e211eb67ca6aa5c995e4a3bf4cf586f
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 14:03:46 2021 +0000
Adjust C768 fcst thread value for reduced node usage
- change C768 nth_fv3_gfs value from 7 to 2
Refs: #164
commit ece41632a76e697184a46bb2a428c35ccdf08305
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 13:58:22 2021 +0000
Add separate gfs resource variables to fcst in config.resources
Refs: #164
commit 00c18b5e341d601fd83da2f9df2ac928e8dcf7c8
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:44:13 2021 +0000
Update FIX_DIR paths in link_fv3gfs.sh
- change p…
jkhender
added a commit
to jkhender/global-workflow
that referenced
this pull request
Mar 18, 2022
…2 branch + 18Mar22 updates)
** 01Mar22 NOAA-EMC/develop branch + GSL updates
** default suite is FV3_RAP_noah_sfcdiff_unified_ugwp
** v5 namelist
** UFS version: tag global-24Feb2022 from NOAA-GSL:gsl/develop branch
Squashed commit of the following:
commit 463658317bd968fe43e25b8deea5d6bea3433bc6
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 18 00:25:34 2022 +0000
Updates for GSL
- restored config.base.emc.dyn to original settings
-- added STEP_GFS
-- set DO_VRFY back to "YES"
- added instantaneous flux variables to grib2 files
-- added files to gfs_post.fd_gsl
-- different configuration file used if running with inline POST
- deleted obsolete files
- deleted older experiment directories
commit dbaadf28f9f41659bdba00f170b8db630a601de7
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Wed Mar 16 21:14:00 2022 +0000
Merge 07Mar2022 gslv16_dev branch into gslv16_dev_cyc
Squashed commit of the following:
commit 25bb23710433d0a3d21659b4e8f599ac0b372d84
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Mon Mar 7 18:07:51 2022 +0000
Additional updates for GSL
- added FV3_RAP_noah_sfcdiff_ugwpv1 to if CCPP_SUITE statements
- corrected path for init dependencies in GSL setup workflow forecast-only script
commit c7f02007d2d1a1817aa8d12cf7341b60778419b6
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Mon Mar 7 16:46:56 2022 +0000
Updated GSL archive script
commit fad24c0b7c507f4f8fa8da30157935cc0869e0bb
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:50:09 2022 +0000
Add link for config.base.emc.dyn under parm/config so link_workflow.sh runs successfully
commit 6fd8fa391ddf055a160e50dddc5badddc2b089c7
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:39:53 2022 +0000
Add experiment directory FV3GFSwfm/gsl_v5 to be used as reference
commit 84941c8f059a30523e0e9c97240137c6f07cf3e1
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:38:22 2022 +0000
Add dt_inner namelist parameter for GSL suites
commit e8ec42ec61d00523caf7fba0ca70f8408f9f529d
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 18:54:55 2022 +0000
Correct syntax error in parsing_namelist_FV3.sh
Correct suite name in build_ufs.sh
Set default CCPP suite to FV3_RAP_noah_sfcdiff_unified_ugwp in config.base.emc.dyn* files
Set DO_VRFY to NO in config.base.emc.dyn* files
Rename GSL archive script to jobs/rocoto/arch_gsl.sh
Changes for running without GF shallow
- comment out consistency check in cu_gf_driver.F90
- set imfshalcnv to -1 in config.fcst
Updates to experiment setup scripts
- created GSL specific files
workflow_utils.py_gsl
setup_workflow_fcstonly_gsl_ics.py
setup_workflow_fcstonly_gsl.py
- pointed workflow_utils.py to GSL version
- added example setup scripts, ffl127.sh and testics.sh
commit 3f736afabc7956d1cf3c3941519116742ac97608
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:20:44 2022 +0000
Added GSL specific getic scripts
commit e8cb894178ac7978fbe4fd5a9851db77ed0032bd
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:16:20 2022 +0000
Add GSL suite definition files to build_ufs.sh
commit 38c354b976be0e445922a18816f59939d31e8c40
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:12:27 2022 +0000
Updates for GSL
- cleaned up checkout.sh
- renamed fv3gfs.fd_gsl to ufs_model.fd_gsl
- renamed suite definition files from FV3_GSD to FV3_RAP
commit 8ea7fd81c914725d453c2c770d3881f04f237215
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 00:40:23 2022 +0000
Updates for GSL
- updated INFO file
- updated GSL Suite Definition Files
renamed FV3_GSD_v0 FV3_RAP_cires_ugwp
renamed FV3_GSD_noah FV3_RAP_sfcdiff_unified_ugwp
added FV3_RAP_sfcdiff_ugwpv1
- renamed GSL diag tables
diag_table_da_gsd => diag_table_da_gsl
diag_table_gsd => diag_table_gsl
diag_table_gsd_ruc => diag_table_gsl_ruc
- renamed GSL field table
field_table_gsd => field_table_thompson_aero_tke
- change cdmbgwd values for SDF FV3_RAP_noah_sfcdiff_ugwpv1
commit b0ea869ef9d11662b0710e4763f9f36064efab55
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 3 20:50:41 2022 +0000
Merge 01Mar2022 NOAA-EMC/develop branch into gslv16_dev
Squashed commit of the following:
commit a0e23e254c7c881b20d66c1c53cd36de509e6d69
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 1 10:50:39 2022 -0500
Specify memory for init job (#669)
The init job has been failing on HPC using slurm due to out-of-memory errors. Now the init job specifies the amount of memory needed.
Fixes #631
commit 6874e8939211fdc07143450bfd1b6a2863172e10
Author: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
Date: Fri Feb 25 16:39:45 2022 -0500
Cleanup of utils directory (#660)
Removes all of the old, unused GSM scripts and code from the utils directory. Those codes that might still be used have been moved to a new GSM-utils repo.
Fixes #618
commit e3d64abc9c02aecb9d5d38755f6524bf9e277e66
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 24 22:49:45 2022 -0500
Fix bug with partition_batch on WCOSS (#668)
partition_batch was not being defined for WCOSS machines, but was
being used in a substitution for config.base.
Fixes #667
commit 9d75d8d78037c7a74d1a9c61a88d9d6a7e9b3be9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Mon Feb 21 02:10:00 2022 -0500
Split output filetype variable into atm and sfc (#602)
The determination of the FV3 output filetype was a bit unwieldy as it
contained two different settings (one for the atmosphere and one for
the surface) that were not necessarily changed at the same time. They
were also being determined in a different location than other settings
based on the model resolution.
Now the old OUTPUT_FILETYPES variable has been split into two different
variables, OUTPUT_FILETYPES_ATM and OUTPUT_FILETYPES_SFC. The determi-
nation was also moved into the config.fv3 file, where other resolution-
dependent computational settings are set.
This has resulted in some functional change on WCOSS Dell, as the EnKF
was using different chunking settings and never used parallel output
for the surface likely because wasn't being run at a low enough resolu-
tion to consider it. However, there is no reason to believe the two
forecast modes should have different chunk or output settings. So, I've
used the EnKF chunking settings and the free forecast switchover point
for the surface output mode.
The new filetype settings are now also divorced from the OUTPUT_FILE
setting. However, that setting will soon be unnecessary as nemsio
is removed from the code as an option (see Issue #601).
Fixes #600
Refs #601
commit cb8b5adf16200e7b01b8236a960efce5b6d8ce5d
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 17 15:55:24 2022 -0500
Correct MODE comparisons for forecast only (#658)
When the setup_expt scripts were combined, the forecast mode became a mandatory
argument. The value of this option is then directly used for the MODE variable,
but the argument name (forecast-only) does not match what was previously used
for MODE in the forecast-only script (free) and some scripts were still testing
against the old value instead of the new one. Those comparisons have now been
updated to use the new MODE name.
Fixes #657
commit f8867d3f0b1f3b5d238dced412996c56e30d31a1
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Thu Feb 10 20:23:54 2022 -0500
Add LOCALARCH option (#628)
Adds the option to archive output locally during archive jobs. This is intended for systems that do not have access to HPSS (e.g. Orion and soon S4), but can be used on any machine. To enable, the LOCALARCH setting in config.base should be set to "YES" (HPSSARCH must be "NO"). When enabled, the tarballs normally created on HPSS will instead be created in the local directory specified by $ATARDIR.
Defaults have been added to setup_expt.py to point to a local ATARDIR and LOCALARCH (currently =NO).
Fixes #624.
commit 2950c7b97f99341caa738526138022987f665627
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Feb 10 18:07:43 2022 -0500
Turn on fractional grid by default for uncoupled forecasts (#638)
Updates input.nml so that there is more consistency between the cpl and standalone atm input.nml. In particular this addresses the fact that frac_grid was only being set if cpl was true.
Fixes #571
commit 64b1c1e5ce37fba48dd717bd11356a6f57d9def4
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Feb 9 17:02:39 2022 -0500
Specify warm start as .true. or .false. (#644)
Corrects the assignment of EXP_WARM_START to either .true. or .false. depending on the value passed to setup_expt.py via `--start`.
Fixes #643
commit e537f0cecabc8e16e26b14e606558de906b19e3f
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 23:33:21 2022 -0500
Archive TC tracking logs if produced (#627)
The archive job was failing if there were no tropical cyclone files (such as when there are no cyclones). This adds a check for the TC tracking logs in case they are not produced to prevent the gfsarch job from failing on cycles when there were no TCs to track.
Fixes #625.
commit 32f93becde5ffa07c162252b95417845f2ab5159
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:59:37 2022 -0500
Fix separate threading for GFS and GDAS forecasts. (#621)
Fix separate threading options for GDAS and GFS forecasts (#610). This is performed by keeping nth_fcst_gfs separate from nth_fcst and declaring the new variable npe_node_fcst_gfs.
Fixes #610
commit 9bb09a92c55d4534feca5d521fbbd1c664730317
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:58:05 2022 -0500
Updated the RadMon and OznMon links. #596 (#597)
commit 97ebc4d4e6483b135468d85cd9ed974f88955914
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Thu Feb 3 02:56:34 2022 -0500
Unify `setup_expt.py` and `setup_expt_fcstonly.py` (#537)
`setup_expt.py` and `setup_expt_fcstonly.py` are unified under the former name.
The user is now required to provide a `mode` as the first positional argument to `setup.py`. Valid options are `cycled` and `forecast-only`.
```
❯ python3 setup_expt.py -h
usage: setup_expt.py [-h] {cycled,forecast-only} ...
Setup files and directories to start a GFS parallel. Create EXPDIR, copy config files. Create COMROT experiment directory structure, link
initial condition files from $ICSDIR to $COMROT
positional arguments:
{cycled,forecast-only}
cycled arguments for cycled mode
forecast-only arguments for forecast-only mode
optional arguments:
-h, --help show this help message and exit
```
Upon choosing one of these modes, options specific to the mode can be realized as follows for the `forecast-only` and `cycled` modes respectively.
```
❯ python3 setup_expt.py forecast-only -h feature/unify-setups
usage: setup_expt.py forecast-only [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--app {ATM,ATMW,S2S,S2SW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--app {ATM,ATMW,S2S,S2SW}
UFS application
```
```
❯ python3 setup_expt.py cycled -h feature/unify-setups
usage: setup_expt.py cycled [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--resens RESENS] [--nens NENS] [--app {ATM,ATMW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--resens RESENS resolution of the ensemble model forecast
--nens NENS number of ensemble members
--app {ATM,ATMW} UFS application
```
Note, `cycled` mode presents some extra options e.g. `nens` as well as a reduced list of the UFS weather model applications.
The functionality of `--icsdir` had been broken for cycled and was hard-coded in free forecast. The functionality has now been repaired for cycled. If you provide one, $COMROT will be populated with appropriate links. If none is specified, no links will be created in $COMROT. In coupled mode free-forecast, ICs are copied *to* icsdir from the central maintained prototype location. Coupled users will now need to set this explicitly. For non-coupled forecast-only, this setting currently does nothing.
The default value for `--configdir` has been updated to the appropriate location in the workflow. Most users will no longer need to set it unless they want to point to a different config source.
The default values for `--comrot` and `--expdir` are updated from None to $HOME to facilitate offline testing of workflow creation.
There are some irrelevant sections such as `gfs_cyc` in forecast-only that is still preserved in this PR. It will be cleaned up in subsequent PR's.
Another unnecessary complication is the argument of `--start`. The logic presented here would ideally be selected at runtime based on the type of IC's populated in comrot. It is left unchanged.
commit d7319f19aceca6ae6d7ce9b06c6eb731832d1de1
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:19:43 2022 -0500
Stop archiving gfsarch.log as it is being written (#581)
The gfs archive job was failing because it was attempting to archive its own log file into gfsa.tar while it was being written. To exclude that file pattern, bash extended globbing is turned on, which allows the use of a negating group.
Fixes: #558
commit 1b300dbf98eccdf03117b3795a2d8da3310a6126
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:18:55 2022 -0500
Fix build on non-WCOSS2 machines (#612)
The UFS_UTILS and GLDAS versions are updated to correct build problems on development machines. Each had been using a beta version of ESMF that was removed from the hpc-stack installation without warning. Additionally, GLDAS had introduced bugs into their build scripts during the WCOSS2 port. These issues are now all corrected in the new versions.
Also updates the UFS_UTILS repository to its new location under UFS instead of EMC.
Fixes #476, #561
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb702 e5cd63693
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11ef 0740b5b6c
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74bb fc48af56d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013decd ce66c74bb
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea52 7a166da9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2c 5c042e087
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4c cfca8bb2c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f55583 fba8cef5b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d11 e08f55583
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb39 e08f55583
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f1 b2879fe9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376bab e09a398f1
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit b2879fe9f90def631047f533db2144858d827023
Merge: 68b9157bd a8ed770d9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 10:07:05 2021 -0400
Merge pull request #326 from NOAA-EMC/release/gfsv16.1.1
GFSv16.1.1
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc1 6bad810bc
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77afd e3fcfebc1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed39 e3fcfebc1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
udate config.base.emc.dyn
high resolution MERRA2 data used
fixed a bug related to orion
added merra2 input and update diag_table
merra2 workflow for orion
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
commit 4641c5d206a95e0e66276fa86d46ecd580213fd5
Merge: eff8a1258 e3fcfebc1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 19 14:51:19 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit e3fcfebc1ff9c9f9ceda7b775de0c34117de6459
Merge: 95e0dffea fa5d1e2ba
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 19 10:02:19 2021 -0400
Merge pull request #254 from AnningCheng-NOAA/merra2
Addition of support for MERRA2
commit fa5d1e2ba242a08e26cb7bac8c68b700a83d1d60
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue May 18 10:41:16 2021 -0400
change fv3gfs checkout head
commit 283c4a044847bbadd0cef46e14dde4de97abe986
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 17 15:56:56 2021 -0400
fixed a compilation error, NEMs/exe existing, in hera
commit 6b574160f94329754677e7f4541ab07c44185bb0
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Fri May 14 13:44:18 2021 +0000
build_fv3.sh with ATM
commit dfc8aa9a2cf5370fff38520d2a28f3960be3b583
Merge: bf5d11063 95e0dffea
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed May 12 20:11:44 2021 +0000
Merge remote-tracking branch 'upstream/develop' into merra2
commit eff8a1258aa70c061fe69697388f8914935726ee
Merge: b1ad0b963 95e0dffea
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 12 19:15:17 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit 95e0dffea435af17be9150fcd0c842763768b45f
Merge: fc727f405 dd4d18790
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 12 14:51:10 2021 -0400
Merge pull request #323 from NOAA-EMC/sync/operations_v16.0.9
Bring operations branch v16.0.9 changes into develop
commit dd4d1879093516a7950c9e0e59f6e44e462199f6
Merge: fc727f405 68b9157bd
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 10 16:40:13 2021 +0000
Merge remote-tracking branch 'origin/operations' into sync/operations_v16.0.9
* origin/operations:
bugfix for not removing last point from list in wave post pnt jobs
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
Refs: #309
commit 8def77afd4a9f1cd6cdca42c956bc7ebf675a58d
Merge: c6e2a96e8 d46e8cf49
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 10 11:45:02 2021 -0400
Merge pull request #322 from JessicaMeixner-NOAA/hpcstackww3
Updates for ww3 pre and post exec builds for hpc-stack
commit d46e8cf49aff0dbf72e457f1177e10e6f50252a6
Author: Jessica Meixner <Jessica.Meixner@noaa.gov>
Date: Mon May 10 15:31:56 2021 +0000
update for ww3_pre/post build:
-- remove ww3 specific module files
-- updated module base files to be in sync with ufs-weather-model
except that jasper is a more recent version which is needed for ww3_grib
-- added extra ww3 execs needed for this branch
-- added ww3prepost build to build_all and partial build
commit c6e2a96e86611cce00455609d9be803d580e7bc0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:30:13 2021 +0000
Change fix file linking to scan for possible subfolders in set
- instead of providing subfolder names, scan for subfolders in FIX_DIR path
and then create symlinks based on existing subfolders in set
- will not have to keep updating list of subfolders now
Refs: #164
commit aa1d1e9ca1d8521ef22e1bdb654d4a70e7b1e29e
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:27:13 2021 +0000
Change CCPP_SUITE from FV3_GFS_v16beta to FV3_GFS_v16
- newer ufs-weather-model hash supports FV3_GFS_v16 suite
Refs: #164
commit a8ed770d9c1e8614c5477d0129d6eaf5fe4e2085
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:32:36 2021 +0000
Companion update to Externals.cfg for WAFS tag update to gfs_wafs.v6.0.22
Refs: #1,#321
…
jkhender
added a commit
to jkhender/global-workflow
that referenced
this pull request
Mar 24, 2022
-- bring workflow up to 01Mar2022 NOAA-EMC/develop branch
Squashed commit of the following:
commit b90c2ce84374a7207044d8172a611d38c1000c4c
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Wed Mar 23 21:26:57 2022 +0000
Updates for GSL
- added STEP_GFS back to config.base.emc.dyn_jet
- modified link_workflow.sh to copy machine-specific config.base.emc.dyn in parm/config
- removed linking of config.base.emc.dyn in experiment setup script, ffl127.sh
commit 9513a6d569a548e93c4f678741f80c6891ed7725
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 22 00:11:00 2022 +0000
Turn off DO_VRFY in config.base.emc.dyn so correct XML file gets created
commit 776651b573d3b6dc07729fda58d029103dc3a9c9
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 22 00:00:04 2022 +0000
Update experiment setup script and example directory
- corrected syntax error in setup_workflow_fcstonly_gsl.py
- updated files in FV3GFSwfm/gsl_v5 experiment directory to be used as reference
commit ae66f75d310e4163853614738883278cd7d167c1
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 18 00:37:07 2022 +0000
Updates for GSL
- restored config.base.emc.dyn to original settings
-- added STEP_GFS
-- set DO_VRFY back to "YES"
- updated jobs/JGLOBAL_WAVE_PREP to correct version
- added GSL-specific vrfy shell script, vrfy_gsl.sh
- deleted obsolete files
- added instantaneous flux variables to grib2 files
-- added files to gfs_post.fd_gsl
(different configuration file used if running with inline POST)
commit 25bb23710433d0a3d21659b4e8f599ac0b372d84
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Mon Mar 7 18:07:51 2022 +0000
Additional updates for GSL
- added FV3_RAP_noah_sfcdiff_ugwpv1 to if CCPP_SUITE statements
- corrected path for init dependencies in GSL setup workflow forecast-only script
commit c7f02007d2d1a1817aa8d12cf7341b60778419b6
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Mon Mar 7 16:46:56 2022 +0000
Updated GSL archive script
commit fad24c0b7c507f4f8fa8da30157935cc0869e0bb
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:50:09 2022 +0000
Add link for config.base.emc.dyn under parm/config so link_workflow.sh runs successfully
commit 6fd8fa391ddf055a160e50dddc5badddc2b089c7
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:39:53 2022 +0000
Add experiment directory FV3GFSwfm/gsl_v5 to be used as reference
commit 84941c8f059a30523e0e9c97240137c6f07cf3e1
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:38:22 2022 +0000
Add dt_inner namelist parameter for GSL suites
commit e8ec42ec61d00523caf7fba0ca70f8408f9f529d
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 18:54:55 2022 +0000
Correct syntax error in parsing_namelist_FV3.sh
Correct suite name in build_ufs.sh
Set default CCPP suite to FV3_RAP_noah_sfcdiff_unified_ugwp in config.base.emc.dyn* files
Set DO_VRFY to NO in config.base.emc.dyn* files
Rename GSL archive script to jobs/rocoto/arch_gsl.sh
Changes for running without GF shallow
- comment out consistency check in cu_gf_driver.F90
- set imfshalcnv to -1 in config.fcst
Updates to experiment setup scripts
- created GSL specific files
workflow_utils.py_gsl
setup_workflow_fcstonly_gsl_ics.py
setup_workflow_fcstonly_gsl.py
- pointed workflow_utils.py to GSL version
- added example setup scripts, ffl127.sh and testics.sh
commit 3f736afabc7956d1cf3c3941519116742ac97608
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:20:44 2022 +0000
Added GSL specific getic scripts
commit e8cb894178ac7978fbe4fd5a9851db77ed0032bd
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:16:20 2022 +0000
Add GSL suite definition files to build_ufs.sh
commit 38c354b976be0e445922a18816f59939d31e8c40
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:12:27 2022 +0000
Updates for GSL
- cleaned up checkout.sh
- renamed fv3gfs.fd_gsl to ufs_model.fd_gsl
- renamed suite definition files from FV3_GSD to FV3_RAP
commit 8ea7fd81c914725d453c2c770d3881f04f237215
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 00:40:23 2022 +0000
Updates for GSL
- updated INFO file
- updated GSL Suite Definition Files
renamed FV3_GSD_v0 FV3_RAP_cires_ugwp
renamed FV3_GSD_noah FV3_RAP_sfcdiff_unified_ugwp
added FV3_RAP_sfcdiff_ugwpv1
- renamed GSL diag tables
diag_table_da_gsd => diag_table_da_gsl
diag_table_gsd => diag_table_gsl
diag_table_gsd_ruc => diag_table_gsl_ruc
- renamed GSL field table
field_table_gsd => field_table_thompson_aero_tke
- change cdmbgwd values for SDF FV3_RAP_noah_sfcdiff_ugwpv1
commit b0ea869ef9d11662b0710e4763f9f36064efab55
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 3 20:50:41 2022 +0000
Merge 01Mar2022 NOAA-EMC/develop branch into gslv16_dev
Squashed commit of the following:
commit a0e23e254c7c881b20d66c1c53cd36de509e6d69
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 1 10:50:39 2022 -0500
Specify memory for init job (#669)
The init job has been failing on HPC using slurm due to out-of-memory errors. Now the init job specifies the amount of memory needed.
Fixes #631
commit 6874e8939211fdc07143450bfd1b6a2863172e10
Author: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
Date: Fri Feb 25 16:39:45 2022 -0500
Cleanup of utils directory (#660)
Removes all of the old, unused GSM scripts and code from the utils directory. Those codes that might still be used have been moved to a new GSM-utils repo.
Fixes #618
commit e3d64abc9c02aecb9d5d38755f6524bf9e277e66
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 24 22:49:45 2022 -0500
Fix bug with partition_batch on WCOSS (#668)
partition_batch was not being defined for WCOSS machines, but was
being used in a substitution for config.base.
Fixes #667
commit 9d75d8d78037c7a74d1a9c61a88d9d6a7e9b3be9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Mon Feb 21 02:10:00 2022 -0500
Split output filetype variable into atm and sfc (#602)
The determination of the FV3 output filetype was a bit unwieldy as it
contained two different settings (one for the atmosphere and one for
the surface) that were not necessarily changed at the same time. They
were also being determined in a different location than other settings
based on the model resolution.
Now the old OUTPUT_FILETYPES variable has been split into two different
variables, OUTPUT_FILETYPES_ATM and OUTPUT_FILETYPES_SFC. The determi-
nation was also moved into the config.fv3 file, where other resolution-
dependent computational settings are set.
This has resulted in some functional change on WCOSS Dell, as the EnKF
was using different chunking settings and never used parallel output
for the surface likely because wasn't being run at a low enough resolu-
tion to consider it. However, there is no reason to believe the two
forecast modes should have different chunk or output settings. So, I've
used the EnKF chunking settings and the free forecast switchover point
for the surface output mode.
The new filetype settings are now also divorced from the OUTPUT_FILE
setting. However, that setting will soon be unnecessary as nemsio
is removed from the code as an option (see Issue #601).
Fixes #600
Refs #601
commit cb8b5adf16200e7b01b8236a960efce5b6d8ce5d
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 17 15:55:24 2022 -0500
Correct MODE comparisons for forecast only (#658)
When the setup_expt scripts were combined, the forecast mode became a mandatory
argument. The value of this option is then directly used for the MODE variable,
but the argument name (forecast-only) does not match what was previously used
for MODE in the forecast-only script (free) and some scripts were still testing
against the old value instead of the new one. Those comparisons have now been
updated to use the new MODE name.
Fixes #657
commit f8867d3f0b1f3b5d238dced412996c56e30d31a1
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Thu Feb 10 20:23:54 2022 -0500
Add LOCALARCH option (#628)
Adds the option to archive output locally during archive jobs. This is intended for systems that do not have access to HPSS (e.g. Orion and soon S4), but can be used on any machine. To enable, the LOCALARCH setting in config.base should be set to "YES" (HPSSARCH must be "NO"). When enabled, the tarballs normally created on HPSS will instead be created in the local directory specified by $ATARDIR.
Defaults have been added to setup_expt.py to point to a local ATARDIR and LOCALARCH (currently =NO).
Fixes #624.
commit 2950c7b97f99341caa738526138022987f665627
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Feb 10 18:07:43 2022 -0500
Turn on fractional grid by default for uncoupled forecasts (#638)
Updates input.nml so that there is more consistency between the cpl and standalone atm input.nml. In particular this addresses the fact that frac_grid was only being set if cpl was true.
Fixes #571
commit 64b1c1e5ce37fba48dd717bd11356a6f57d9def4
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Feb 9 17:02:39 2022 -0500
Specify warm start as .true. or .false. (#644)
Corrects the assignment of EXP_WARM_START to either .true. or .false. depending on the value passed to setup_expt.py via `--start`.
Fixes #643
commit e537f0cecabc8e16e26b14e606558de906b19e3f
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 23:33:21 2022 -0500
Archive TC tracking logs if produced (#627)
The archive job was failing if there were no tropical cyclone files (such as when there are no cyclones). This adds a check for the TC tracking logs in case they are not produced to prevent the gfsarch job from failing on cycles when there were no TCs to track.
Fixes #625.
commit 32f93becde5ffa07c162252b95417845f2ab5159
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:59:37 2022 -0500
Fix separate threading for GFS and GDAS forecasts. (#621)
Fix separate threading options for GDAS and GFS forecasts (#610). This is performed by keeping nth_fcst_gfs separate from nth_fcst and declaring the new variable npe_node_fcst_gfs.
Fixes #610
commit 9bb09a92c55d4534feca5d521fbbd1c664730317
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:58:05 2022 -0500
Updated the RadMon and OznMon links. #596 (#597)
commit 97ebc4d4e6483b135468d85cd9ed974f88955914
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Thu Feb 3 02:56:34 2022 -0500
Unify `setup_expt.py` and `setup_expt_fcstonly.py` (#537)
`setup_expt.py` and `setup_expt_fcstonly.py` are unified under the former name.
The user is now required to provide a `mode` as the first positional argument to `setup.py`. Valid options are `cycled` and `forecast-only`.
```
❯ python3 setup_expt.py -h
usage: setup_expt.py [-h] {cycled,forecast-only} ...
Setup files and directories to start a GFS parallel. Create EXPDIR, copy config files. Create COMROT experiment directory structure, link
initial condition files from $ICSDIR to $COMROT
positional arguments:
{cycled,forecast-only}
cycled arguments for cycled mode
forecast-only arguments for forecast-only mode
optional arguments:
-h, --help show this help message and exit
```
Upon choosing one of these modes, options specific to the mode can be realized as follows for the `forecast-only` and `cycled` modes respectively.
```
❯ python3 setup_expt.py forecast-only -h feature/unify-setups
usage: setup_expt.py forecast-only [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--app {ATM,ATMW,S2S,S2SW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--app {ATM,ATMW,S2S,S2SW}
UFS application
```
```
❯ python3 setup_expt.py cycled -h feature/unify-setups
usage: setup_expt.py cycled [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--resens RESENS] [--nens NENS] [--app {ATM,ATMW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--resens RESENS resolution of the ensemble model forecast
--nens NENS number of ensemble members
--app {ATM,ATMW} UFS application
```
Note, `cycled` mode presents some extra options e.g. `nens` as well as a reduced list of the UFS weather model applications.
The functionality of `--icsdir` had been broken for cycled and was hard-coded in free forecast. The functionality has now been repaired for cycled. If you provide one, $COMROT will be populated with appropriate links. If none is specified, no links will be created in $COMROT. In coupled mode free-forecast, ICs are copied *to* icsdir from the central maintained prototype location. Coupled users will now need to set this explicitly. For non-coupled forecast-only, this setting currently does nothing.
The default value for `--configdir` has been updated to the appropriate location in the workflow. Most users will no longer need to set it unless they want to point to a different config source.
The default values for `--comrot` and `--expdir` are updated from None to $HOME to facilitate offline testing of workflow creation.
There are some irrelevant sections such as `gfs_cyc` in forecast-only that is still preserved in this PR. It will be cleaned up in subsequent PR's.
Another unnecessary complication is the argument of `--start`. The logic presented here would ideally be selected at runtime based on the type of IC's populated in comrot. It is left unchanged.
commit d7319f19aceca6ae6d7ce9b06c6eb731832d1de1
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:19:43 2022 -0500
Stop archiving gfsarch.log as it is being written (#581)
The gfs archive job was failing because it was attempting to archive its own log file into gfsa.tar while it was being written. To exclude that file pattern, bash extended globbing is turned on, which allows the use of a negating group.
Fixes: #558
commit 1b300dbf98eccdf03117b3795a2d8da3310a6126
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:18:55 2022 -0500
Fix build on non-WCOSS2 machines (#612)
The UFS_UTILS and GLDAS versions are updated to correct build problems on development machines. Each had been using a beta version of ESMF that was removed from the hpc-stack installation without warning. Additionally, GLDAS had introduced bugs into their build scripts during the WCOSS2 port. These issues are now all corrected in the new versions.
Also updates the UFS_UTILS repository to its new location under UFS instead of EMC.
Fixes #476, #561
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb702 e5cd63693
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11ef 0740b5b6c
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74bb fc48af56d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013decd ce66c74bb
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea52 7a166da9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2c 5c042e087
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4c cfca8bb2c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f55583 fba8cef5b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d11 e08f55583
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb39 e08f55583
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f1 b2879fe9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376bab e09a398f1
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit b2879fe9f90def631047f533db2144858d827023
Merge: 68b9157bd a8ed770d9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 10:07:05 2021 -0400
Merge pull request #326 from NOAA-EMC/release/gfsv16.1.1
GFSv16.1.1
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc1 6bad810bc
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77afd e3fcfebc1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed39 e3fcfebc1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
udate config.base.emc.dyn
high resolution MERRA2 data used
fixed a bug related to orion
added merra2 input and update diag_table
merra2 workflow for orion
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
commit 4641c5d206a95e0e66276fa86d46ecd580213fd5
Merge: eff8a1258 e3fcfebc1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 19 14:51:19 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit e3fcfebc1ff9c9f9ceda7b775de0c34117de6459
Merge: 95e0dffea fa5d1e2ba
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 19 10:02:19 2021 -0400
Merge pull request #254 from AnningCheng-NOAA/merra2
Addition of support for MERRA2
commit fa5d1e2ba242a08e26cb7bac8c68b700a83d1d60
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue May 18 10:41:16 2021 -0400
change fv3gfs checkout head
commit 283c4a044847bbadd0cef46e14dde4de97abe986
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 17 15:56:56 2021 -0400
fixed a compilation error, NEMs/exe existing, in hera
commit 6b574160f94329754677e7f4541ab07c44185bb0
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Fri May 14 13:44:18 2021 +0000
build_fv3.sh with ATM
commit dfc8aa9a2cf5370fff38520d2a28f3960be3b583
Merge: bf5d11063 95e0dffea
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed May 12 20:11:44 2021 +0000
Merge remote-tracking branch 'upstream/develop' into merra2
commit eff8a1258aa70c061fe69697388f8914935726ee
Merge: b1ad0b963 95e0dffea
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 12 19:15:17 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit 95e0dffea435af17be9150fcd0c842763768b45f
Merge: fc727f405 dd4d18790
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 12 14:51:10 2021 -0400
Merge pull request #323 from NOAA-EMC/sync/operations_v16.0.9
Bring operations branch v16.0.9 changes into develop
commit dd4d1879093516a7950c9e0e59f6e44e462199f6
Merge: fc727f405 68b9157bd
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 10 16:40:13 2021 +0000
Merge remote-tracking branch 'origin/operations' into sync/operations_v16.0.9
* origin/operations:
bugfix for not removing last point from list in wave post pnt jobs
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
Refs: #309
commit 8def77afd4a9f1cd6cdca42c956bc7ebf675a58d
Merge: c6e2a96e8 d46e8cf49
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 10 11:45:02 2021 -0400
Merge pull request #322 from JessicaMeixner-NOAA/hpcstackww3
Updates for ww3 pre and post exec builds for hpc-stack
commit d46e8cf49aff0dbf72e457f1177e10e6f50252a6
Author: Jessica Meixner <Jessica.Meixner@noaa.gov>
Date: Mon May 10 15:31:56 2021 +0000
update for ww3_pre/post build:
-- remove ww3 specific module files
-- updated module base files to be in sync with ufs-weather-model
except that jasper is a more recent version which is needed for ww3_grib
-- added extra ww3 execs needed for this branch
-- added ww3prepost build to build_all and partial build
commit c6e2a96e86611cce00455609d9be803d580e7bc0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:30:13 2021 +0000
Change fix file linking to scan for possible subfolders in set
- instead of providing subfolder names, scan for subfolders in FIX_DIR path
and then create symlinks based on existing subfolders in set
- will not have to keep updating list of subfolders now
Refs: #164
commit aa1d1e9ca1d8521ef22e1bdb654d4a70e7b1e29e
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:27:13 2021 +0000
Change CCPP_SUITE from FV3_GFS_v16beta to FV3_GFS_v16
- newer ufs-weather-model hash supports FV3_GFS_v16 suite
Refs: #164
commit a8ed770d9c1e8614c5477d0129d6eaf5fe4e2085
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:32:36 2021 +0000
Companion update to Externals.cfg for WAFS tag update to gfs_wafs.v6.0.22
Refs: #1,#321
commit 68d9b5b5ff072b1f62131a9f7495c33c14c4a850
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:28:17 2021 +0000
WAFS tag update to gfs_wafs.v6.0.22 for bug fix
Refs: #1,#321
commit 68b9157bd59278dc07369d316999d3c8485ebf7c
Merge: 1f5af6283 97fe99096
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 5 10:50:42 2021 -0400
Merge pull request #306 from NOAA-EMC/release/gfsv16.0.0_to_ops
GFSv16.0.9
commit 1aea3ee393c99d4f76556fbbdbebc43f629558c2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:30:06 2021 +0000
Add build script and modulefiles for WW3 build
- WW3 execs no longer built by FV3 build, need separate build now
- add new build_ww3prepost.sh script for building WW3 execs in ufs-weather-model checkout
- add modulefiles for WCOSS-Dell, Hera, and Orion
Refs: #164
commit 214431a2c04f6e685e966810621fc2fae771d2f5
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:26:00 2021 +0000
Update WAFS execs to include .x
- update WAFS exec names in link_fv3gfs.sh to include ".x" extension that was added with new version
Refs: #164
commit eb1613764794a35d165e55423682ed592b2aaacb
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:22:06 2021 +0000
ufs-weather-model hash update for WW3 support with hpc-stack
- update ufs-weather-model hash to 554aedcd63e4a7c5012570406132eaf76e249ca9
- update build_fv3.sh for new compile arguments for CCPP/WW3 build
Refs: #164
commit b1ad0b96328a54112ecc13ff4b71dcc08556a8c1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 5 14:13:58 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.1
Refs: #315
commit c206e8d2606f14ee6188740f881673ff512b866b
Author: Mallory Row <mallory.row@noaa.gov>
Date: Mon May 3 19:16:42 2021 +0000
Fix typo in config.metp
There was a typo in the grid-to-obs METviewer related config variables.
The variables started with "g2g1" instead of "g2o1".
Refs: #315
commit f9013decd5af75f66eda619175bacc7549f4746a
Author: Brian Curtis <Brian.Curtis@noaa.gov>
Date: Mon May 3 14:37:13 2021 -0400
Files to test for python3 compatibility
commit 0b9607711900e0da0de3d3dc1af91cc4dc9dd04d
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 12:31:01 2021 -0400
Update v16.1 release notes with wave script fix
Refs: #301
commit fda26e9010ef59f69cd378c3092bdc82e57e4ec2
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date: Mon May 3 12:08:12 2021 -0400
Update config.base.nco.static
Change HOME…
jkhender
added a commit
to jkhender/global-workflow
that referenced
this pull request
Mar 29, 2022
-- 01Mar22 NOAA-EMC/global-workflow develop branch, a0e23e2
post: c939eae (10Nov21)
ufs_utils: 26cd024 (31Jan22)
-- 24Feb22 gsl/develop branch, a2a6a22, tag global-24Feb2022
v5 namelist
unified UGWP ( FV3_RAP_noah_sfcdiff_unified_ugwp SDF )
no GF shallow convection
Squashed commit of the following:
commit 34fd1fc2b2d33c3799357dc4f031870e0247b337
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 29 00:48:48 2022 +0000
Modified realtime experiment setup scripts
commit 3fb2b1cb4189cd2f066e0f4a5925e3854283189c
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 29 00:37:36 2022 +0000
Updates for GSL
- added experiment setup scripts for jet
- changed default STMP and PTMP paths
- change resources for gfsgetic task
commit 1134dd4b98142b2e0fafa0043f4fc0c28a2004d7
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 19:06:44 2022 +0000
Correct paths for logfiles in checkout scripts
commit b7df605d3ea1912d36f7521fca3869edc585048f
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 18:41:11 2022 +0000
Updated INFO file and checkout_jet.sh
commit e56dd9a6d4e7d47efbd2d54ec9c3420b66bfc7c0
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 18:40:17 2022 +0000
Remove obsolete lines from experiment setup scripts
commit f3ca5e5d3a17181da1c2e84d6b5b2c5edba0524e
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 18:33:44 2022 +0000
Update realtime experiment setup scripts
commit 564c721e3f4a40f5cfd05900c8f08d386d2e1523
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 02:46:14 2022 +0000
Merge gslv16_dev into gslv16_rt
-- bring workflow up to 01Mar2022 NOAA-EMC/develop branch
Squashed commit of the following:
commit b90c2ce84374a7207044d8172a611d38c1000c4c
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Wed Mar 23 21:26:57 2022 +0000
Updates for GSL
- added STEP_GFS back to config.base.emc.dyn_jet
- modified link_workflow.sh to copy machine-specific config.base.emc.dyn in parm/config
- removed linking of config.base.emc.dyn in experiment setup script, ffl127.sh
commit 9513a6d569a548e93c4f678741f80c6891ed7725
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 22 00:11:00 2022 +0000
Turn off DO_VRFY in config.base.emc.dyn so correct XML file gets created
commit 776651b573d3b6dc07729fda58d029103dc3a9c9
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 22 00:00:04 2022 +0000
Update experiment setup script and example directory
- corrected syntax error in setup_workflow_fcstonly_gsl.py
- updated files in FV3GFSwfm/gsl_v5 experiment directory to be used as reference
commit ae66f75d310e4163853614738883278cd7d167c1
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 18 00:37:07 2022 +0000
Updates for GSL
- restored config.base.emc.dyn to original settings
-- added STEP_GFS
-- set DO_VRFY back to "YES"
- updated jobs/JGLOBAL_WAVE_PREP to correct version
- added GSL-specific vrfy shell script, vrfy_gsl.sh
- deleted obsolete files
- added instantaneous flux variables to grib2 files
-- added files to gfs_post.fd_gsl
(different configuration file used if running with inline POST)
commit 25bb23710433d0a3d21659b4e8f599ac0b372d84
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Mon Mar 7 18:07:51 2022 +0000
Additional updates for GSL
- added FV3_RAP_noah_sfcdiff_ugwpv1 to if CCPP_SUITE statements
- corrected path for init dependencies in GSL setup workflow forecast-only script
commit c7f02007d2d1a1817aa8d12cf7341b60778419b6
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Mon Mar 7 16:46:56 2022 +0000
Updated GSL archive script
commit fad24c0b7c507f4f8fa8da30157935cc0869e0bb
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:50:09 2022 +0000
Add link for config.base.emc.dyn under parm/config so link_workflow.sh runs successfully
commit 6fd8fa391ddf055a160e50dddc5badddc2b089c7
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:39:53 2022 +0000
Add experiment directory FV3GFSwfm/gsl_v5 to be used as reference
commit 84941c8f059a30523e0e9c97240137c6f07cf3e1
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:38:22 2022 +0000
Add dt_inner namelist parameter for GSL suites
commit e8ec42ec61d00523caf7fba0ca70f8408f9f529d
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 18:54:55 2022 +0000
Correct syntax error in parsing_namelist_FV3.sh
Correct suite name in build_ufs.sh
Set default CCPP suite to FV3_RAP_noah_sfcdiff_unified_ugwp in config.base.emc.dyn* files
Set DO_VRFY to NO in config.base.emc.dyn* files
Rename GSL archive script to jobs/rocoto/arch_gsl.sh
Changes for running without GF shallow
- comment out consistency check in cu_gf_driver.F90
- set imfshalcnv to -1 in config.fcst
Updates to experiment setup scripts
- created GSL specific files
workflow_utils.py_gsl
setup_workflow_fcstonly_gsl_ics.py
setup_workflow_fcstonly_gsl.py
- pointed workflow_utils.py to GSL version
- added example setup scripts, ffl127.sh and testics.sh
commit 3f736afabc7956d1cf3c3941519116742ac97608
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:20:44 2022 +0000
Added GSL specific getic scripts
commit e8cb894178ac7978fbe4fd5a9851db77ed0032bd
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:16:20 2022 +0000
Add GSL suite definition files to build_ufs.sh
commit 38c354b976be0e445922a18816f59939d31e8c40
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:12:27 2022 +0000
Updates for GSL
- cleaned up checkout.sh
- renamed fv3gfs.fd_gsl to ufs_model.fd_gsl
- renamed suite definition files from FV3_GSD to FV3_RAP
commit 8ea7fd81c914725d453c2c770d3881f04f237215
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 00:40:23 2022 +0000
Updates for GSL
- updated INFO file
- updated GSL Suite Definition Files
renamed FV3_GSD_v0 FV3_RAP_cires_ugwp
renamed FV3_GSD_noah FV3_RAP_sfcdiff_unified_ugwp
added FV3_RAP_sfcdiff_ugwpv1
- renamed GSL diag tables
diag_table_da_gsd => diag_table_da_gsl
diag_table_gsd => diag_table_gsl
diag_table_gsd_ruc => diag_table_gsl_ruc
- renamed GSL field table
field_table_gsd => field_table_thompson_aero_tke
- change cdmbgwd values for SDF FV3_RAP_noah_sfcdiff_ugwpv1
commit b0ea869ef9d11662b0710e4763f9f36064efab55
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 3 20:50:41 2022 +0000
Merge 01Mar2022 NOAA-EMC/develop branch into gslv16_dev
Squashed commit of the following:
commit a0e23e254c7c881b20d66c1c53cd36de509e6d69
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 1 10:50:39 2022 -0500
Specify memory for init job (#669)
The init job has been failing on HPC using slurm due to out-of-memory errors. Now the init job specifies the amount of memory needed.
Fixes #631
commit 6874e8939211fdc07143450bfd1b6a2863172e10
Author: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
Date: Fri Feb 25 16:39:45 2022 -0500
Cleanup of utils directory (#660)
Removes all of the old, unused GSM scripts and code from the utils directory. Those codes that might still be used have been moved to a new GSM-utils repo.
Fixes #618
commit e3d64abc9c02aecb9d5d38755f6524bf9e277e66
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 24 22:49:45 2022 -0500
Fix bug with partition_batch on WCOSS (#668)
partition_batch was not being defined for WCOSS machines, but was
being used in a substitution for config.base.
Fixes #667
commit 9d75d8d78037c7a74d1a9c61a88d9d6a7e9b3be9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Mon Feb 21 02:10:00 2022 -0500
Split output filetype variable into atm and sfc (#602)
The determination of the FV3 output filetype was a bit unwieldy as it
contained two different settings (one for the atmosphere and one for
the surface) that were not necessarily changed at the same time. They
were also being determined in a different location than other settings
based on the model resolution.
Now the old OUTPUT_FILETYPES variable has been split into two different
variables, OUTPUT_FILETYPES_ATM and OUTPUT_FILETYPES_SFC. The determi-
nation was also moved into the config.fv3 file, where other resolution-
dependent computational settings are set.
This has resulted in some functional change on WCOSS Dell, as the EnKF
was using different chunking settings and never used parallel output
for the surface likely because wasn't being run at a low enough resolu-
tion to consider it. However, there is no reason to believe the two
forecast modes should have different chunk or output settings. So, I've
used the EnKF chunking settings and the free forecast switchover point
for the surface output mode.
The new filetype settings are now also divorced from the OUTPUT_FILE
setting. However, that setting will soon be unnecessary as nemsio
is removed from the code as an option (see Issue #601).
Fixes #600
Refs #601
commit cb8b5adf16200e7b01b8236a960efce5b6d8ce5d
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 17 15:55:24 2022 -0500
Correct MODE comparisons for forecast only (#658)
When the setup_expt scripts were combined, the forecast mode became a mandatory
argument. The value of this option is then directly used for the MODE variable,
but the argument name (forecast-only) does not match what was previously used
for MODE in the forecast-only script (free) and some scripts were still testing
against the old value instead of the new one. Those comparisons have now been
updated to use the new MODE name.
Fixes #657
commit f8867d3f0b1f3b5d238dced412996c56e30d31a1
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Thu Feb 10 20:23:54 2022 -0500
Add LOCALARCH option (#628)
Adds the option to archive output locally during archive jobs. This is intended for systems that do not have access to HPSS (e.g. Orion and soon S4), but can be used on any machine. To enable, the LOCALARCH setting in config.base should be set to "YES" (HPSSARCH must be "NO"). When enabled, the tarballs normally created on HPSS will instead be created in the local directory specified by $ATARDIR.
Defaults have been added to setup_expt.py to point to a local ATARDIR and LOCALARCH (currently =NO).
Fixes #624.
commit 2950c7b97f99341caa738526138022987f665627
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Feb 10 18:07:43 2022 -0500
Turn on fractional grid by default for uncoupled forecasts (#638)
Updates input.nml so that there is more consistency between the cpl and standalone atm input.nml. In particular this addresses the fact that frac_grid was only being set if cpl was true.
Fixes #571
commit 64b1c1e5ce37fba48dd717bd11356a6f57d9def4
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Feb 9 17:02:39 2022 -0500
Specify warm start as .true. or .false. (#644)
Corrects the assignment of EXP_WARM_START to either .true. or .false. depending on the value passed to setup_expt.py via `--start`.
Fixes #643
commit e537f0cecabc8e16e26b14e606558de906b19e3f
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 23:33:21 2022 -0500
Archive TC tracking logs if produced (#627)
The archive job was failing if there were no tropical cyclone files (such as when there are no cyclones). This adds a check for the TC tracking logs in case they are not produced to prevent the gfsarch job from failing on cycles when there were no TCs to track.
Fixes #625.
commit 32f93becde5ffa07c162252b95417845f2ab5159
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:59:37 2022 -0500
Fix separate threading for GFS and GDAS forecasts. (#621)
Fix separate threading options for GDAS and GFS forecasts (#610). This is performed by keeping nth_fcst_gfs separate from nth_fcst and declaring the new variable npe_node_fcst_gfs.
Fixes #610
commit 9bb09a92c55d4534feca5d521fbbd1c664730317
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:58:05 2022 -0500
Updated the RadMon and OznMon links. #596 (#597)
commit 97ebc4d4e6483b135468d85cd9ed974f88955914
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Thu Feb 3 02:56:34 2022 -0500
Unify `setup_expt.py` and `setup_expt_fcstonly.py` (#537)
`setup_expt.py` and `setup_expt_fcstonly.py` are unified under the former name.
The user is now required to provide a `mode` as the first positional argument to `setup.py`. Valid options are `cycled` and `forecast-only`.
```
❯ python3 setup_expt.py -h
usage: setup_expt.py [-h] {cycled,forecast-only} ...
Setup files and directories to start a GFS parallel. Create EXPDIR, copy config files. Create COMROT experiment directory structure, link
initial condition files from $ICSDIR to $COMROT
positional arguments:
{cycled,forecast-only}
cycled arguments for cycled mode
forecast-only arguments for forecast-only mode
optional arguments:
-h, --help show this help message and exit
```
Upon choosing one of these modes, options specific to the mode can be realized as follows for the `forecast-only` and `cycled` modes respectively.
```
❯ python3 setup_expt.py forecast-only -h feature/unify-setups
usage: setup_expt.py forecast-only [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--app {ATM,ATMW,S2S,S2SW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--app {ATM,ATMW,S2S,S2SW}
UFS application
```
```
❯ python3 setup_expt.py cycled -h feature/unify-setups
usage: setup_expt.py cycled [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--resens RESENS] [--nens NENS] [--app {ATM,ATMW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--resens RESENS resolution of the ensemble model forecast
--nens NENS number of ensemble members
--app {ATM,ATMW} UFS application
```
Note, `cycled` mode presents some extra options e.g. `nens` as well as a reduced list of the UFS weather model applications.
The functionality of `--icsdir` had been broken for cycled and was hard-coded in free forecast. The functionality has now been repaired for cycled. If you provide one, $COMROT will be populated with appropriate links. If none is specified, no links will be created in $COMROT. In coupled mode free-forecast, ICs are copied *to* icsdir from the central maintained prototype location. Coupled users will now need to set this explicitly. For non-coupled forecast-only, this setting currently does nothing.
The default value for `--configdir` has been updated to the appropriate location in the workflow. Most users will no longer need to set it unless they want to point to a different config source.
The default values for `--comrot` and `--expdir` are updated from None to $HOME to facilitate offline testing of workflow creation.
There are some irrelevant sections such as `gfs_cyc` in forecast-only that is still preserved in this PR. It will be cleaned up in subsequent PR's.
Another unnecessary complication is the argument of `--start`. The logic presented here would ideally be selected at runtime based on the type of IC's populated in comrot. It is left unchanged.
commit d7319f19aceca6ae6d7ce9b06c6eb731832d1de1
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:19:43 2022 -0500
Stop archiving gfsarch.log as it is being written (#581)
The gfs archive job was failing because it was attempting to archive its own log file into gfsa.tar while it was being written. To exclude that file pattern, bash extended globbing is turned on, which allows the use of a negating group.
Fixes: #558
commit 1b300dbf98eccdf03117b3795a2d8da3310a6126
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:18:55 2022 -0500
Fix build on non-WCOSS2 machines (#612)
The UFS_UTILS and GLDAS versions are updated to correct build problems on development machines. Each had been using a beta version of ESMF that was removed from the hpc-stack installation without warning. Additionally, GLDAS had introduced bugs into their build scripts during the WCOSS2 port. These issues are now all corrected in the new versions.
Also updates the UFS_UTILS repository to its new location under UFS instead of EMC.
Fixes #476, #561
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb702 e5cd63693
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11ef 0740b5b6c
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74bb fc48af56d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013decd ce66c74bb
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea52 7a166da9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2c 5c042e087
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4c cfca8bb2c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f55583 fba8cef5b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d11 e08f55583
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb39 e08f55583
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f1 b2879fe9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376bab e09a398f1
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit b2879fe9f90def631047f533db2144858d827023
Merge: 68b9157bd a8ed770d9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 10:07:05 2021 -0400
Merge pull request #326 from NOAA-EMC/release/gfsv16.1.1
GFSv16.1.1
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc1 6bad810bc
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77afd e3fcfebc1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed39 e3fcfebc1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
udate config.base.emc.dyn
high resolution MERRA2 data used
fixed a bug related to orion
added merra2 input and update diag_table
merra2 workflow for orion
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
commit 4641c5d206a95e0e66276fa86d46ecd580213fd5
Merge: eff8a1258 e3fcfebc1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 19 14:51:19 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit e3fcfebc1ff9c9f9ceda7b775de0c34117de6459
Merge: 95e0dffea fa5d1e2ba
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 19 10:02:19 2021 -0400
Merge pull request #254 from AnningCheng-NOAA/merra2
Addition of support for MERRA2
commit fa5d1e2ba242a08e26cb7bac8c68b700a83d1d60
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue May 18 10:41:16 2021 -0400
change fv3gfs checkout head
commit 283c4a044847bbadd0cef46e14dde4de97abe986
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 17 15:56:56 2021 -0400
fixed a compilation error, NEMs/exe existing, in hera
commit 6b574160f94329754677e7f4541ab07c44185bb0
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Fri May 14 13:44:18 2021 +0000
build_fv3.sh with ATM
commit dfc8aa9a2cf5370fff38520d2a28f3960be3b583
Merge: bf5d11063 95e0dffea
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed May 12 20:11:44 2021 +0000
Merge remote-tracking branch 'upstream/develop' into merra2
commit eff8a1258aa70c061fe69697388f8914935726ee
Merge: b1ad0b963 95e0dffea
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 12 19:15:17 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit 95e0dffea435af17be9150fcd0c842763768b45f
Merge: fc727f405 dd4d18790
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 12 14:51:10 2021 -0400
Merge pull request #323 from NOAA-EMC/sync/operations_v16.0.9
Bring operations branch v16.0.9 changes into develop
commit dd4d1879093516a7950c9e0e59f6e44e462199f6
Merge: fc727f405 68b9157bd
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 10 16:40:13 2021 +0000
Merge remote-tracking branch 'origin/operations' into sync/operations_v16.0.9
* origin/operations:
bugfix for not removing last point from list in wave post pnt jobs
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file change…
jkhender
added a commit
to jkhender/global-workflow
that referenced
this pull request
Apr 6, 2022
Squashed commit of the following:
commit 9c46b419f6bdabc96a5da008920046a6f1f27912
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 29 01:00:19 2022 +0000
Merge gw_merge_mar01 into gslv16_rt branch
-- 01Mar22 NOAA-EMC/global-workflow develop branch, a0e23e2
post: c939eae (10Nov21)
ufs_utils: 26cd024 (31Jan22)
-- 24Feb22 gsl/develop branch, a2a6a22, tag global-24Feb2022
v5 namelist
unified UGWP ( FV3_RAP_noah_sfcdiff_unified_ugwp SDF )
no GF shallow convection
Squashed commit of the following:
commit 34fd1fc2b2d33c3799357dc4f031870e0247b337
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 29 00:48:48 2022 +0000
Modified realtime experiment setup scripts
commit 3fb2b1cb4189cd2f066e0f4a5925e3854283189c
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 29 00:37:36 2022 +0000
Updates for GSL
- added experiment setup scripts for jet
- changed default STMP and PTMP paths
- change resources for gfsgetic task
commit 1134dd4b98142b2e0fafa0043f4fc0c28a2004d7
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 19:06:44 2022 +0000
Correct paths for logfiles in checkout scripts
commit b7df605d3ea1912d36f7521fca3869edc585048f
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 18:41:11 2022 +0000
Updated INFO file and checkout_jet.sh
commit e56dd9a6d4e7d47efbd2d54ec9c3420b66bfc7c0
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 18:40:17 2022 +0000
Remove obsolete lines from experiment setup scripts
commit f3ca5e5d3a17181da1c2e84d6b5b2c5edba0524e
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 18:33:44 2022 +0000
Update realtime experiment setup scripts
commit 564c721e3f4a40f5cfd05900c8f08d386d2e1523
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 24 02:46:14 2022 +0000
Merge gslv16_dev into gslv16_rt
-- bring workflow up to 01Mar2022 NOAA-EMC/develop branch
Squashed commit of the following:
commit b90c2ce84374a7207044d8172a611d38c1000c4c
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Wed Mar 23 21:26:57 2022 +0000
Updates for GSL
- added STEP_GFS back to config.base.emc.dyn_jet
- modified link_workflow.sh to copy machine-specific config.base.emc.dyn in parm/config
- removed linking of config.base.emc.dyn in experiment setup script, ffl127.sh
commit 9513a6d569a548e93c4f678741f80c6891ed7725
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 22 00:11:00 2022 +0000
Turn off DO_VRFY in config.base.emc.dyn so correct XML file gets created
commit 776651b573d3b6dc07729fda58d029103dc3a9c9
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Tue Mar 22 00:00:04 2022 +0000
Update experiment setup script and example directory
- corrected syntax error in setup_workflow_fcstonly_gsl.py
- updated files in FV3GFSwfm/gsl_v5 experiment directory to be used as reference
commit ae66f75d310e4163853614738883278cd7d167c1
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 18 00:37:07 2022 +0000
Updates for GSL
- restored config.base.emc.dyn to original settings
-- added STEP_GFS
-- set DO_VRFY back to "YES"
- updated jobs/JGLOBAL_WAVE_PREP to correct version
- added GSL-specific vrfy shell script, vrfy_gsl.sh
- deleted obsolete files
- added instantaneous flux variables to grib2 files
-- added files to gfs_post.fd_gsl
(different configuration file used if running with inline POST)
commit 25bb23710433d0a3d21659b4e8f599ac0b372d84
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Mon Mar 7 18:07:51 2022 +0000
Additional updates for GSL
- added FV3_RAP_noah_sfcdiff_ugwpv1 to if CCPP_SUITE statements
- corrected path for init dependencies in GSL setup workflow forecast-only script
commit c7f02007d2d1a1817aa8d12cf7341b60778419b6
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Mon Mar 7 16:46:56 2022 +0000
Updated GSL archive script
commit fad24c0b7c507f4f8fa8da30157935cc0869e0bb
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:50:09 2022 +0000
Add link for config.base.emc.dyn under parm/config so link_workflow.sh runs successfully
commit 6fd8fa391ddf055a160e50dddc5badddc2b089c7
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:39:53 2022 +0000
Add experiment directory FV3GFSwfm/gsl_v5 to be used as reference
commit 84941c8f059a30523e0e9c97240137c6f07cf3e1
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 22:38:22 2022 +0000
Add dt_inner namelist parameter for GSL suites
commit e8ec42ec61d00523caf7fba0ca70f8408f9f529d
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 18:54:55 2022 +0000
Correct syntax error in parsing_namelist_FV3.sh
Correct suite name in build_ufs.sh
Set default CCPP suite to FV3_RAP_noah_sfcdiff_unified_ugwp in config.base.emc.dyn* files
Set DO_VRFY to NO in config.base.emc.dyn* files
Rename GSL archive script to jobs/rocoto/arch_gsl.sh
Changes for running without GF shallow
- comment out consistency check in cu_gf_driver.F90
- set imfshalcnv to -1 in config.fcst
Updates to experiment setup scripts
- created GSL specific files
workflow_utils.py_gsl
setup_workflow_fcstonly_gsl_ics.py
setup_workflow_fcstonly_gsl.py
- pointed workflow_utils.py to GSL version
- added example setup scripts, ffl127.sh and testics.sh
commit 3f736afabc7956d1cf3c3941519116742ac97608
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:20:44 2022 +0000
Added GSL specific getic scripts
commit e8cb894178ac7978fbe4fd5a9851db77ed0032bd
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:16:20 2022 +0000
Add GSL suite definition files to build_ufs.sh
commit 38c354b976be0e445922a18816f59939d31e8c40
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 01:12:27 2022 +0000
Updates for GSL
- cleaned up checkout.sh
- renamed fv3gfs.fd_gsl to ufs_model.fd_gsl
- renamed suite definition files from FV3_GSD to FV3_RAP
commit 8ea7fd81c914725d453c2c770d3881f04f237215
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Mar 4 00:40:23 2022 +0000
Updates for GSL
- updated INFO file
- updated GSL Suite Definition Files
renamed FV3_GSD_v0 FV3_RAP_cires_ugwp
renamed FV3_GSD_noah FV3_RAP_sfcdiff_unified_ugwp
added FV3_RAP_sfcdiff_ugwpv1
- renamed GSL diag tables
diag_table_da_gsd => diag_table_da_gsl
diag_table_gsd => diag_table_gsl
diag_table_gsd_ruc => diag_table_gsl_ruc
- renamed GSL field table
field_table_gsd => field_table_thompson_aero_tke
- change cdmbgwd values for SDF FV3_RAP_noah_sfcdiff_ugwpv1
commit b0ea869ef9d11662b0710e4763f9f36064efab55
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu Mar 3 20:50:41 2022 +0000
Merge 01Mar2022 NOAA-EMC/develop branch into gslv16_dev
Squashed commit of the following:
commit a0e23e254c7c881b20d66c1c53cd36de509e6d69
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 1 10:50:39 2022 -0500
Specify memory for init job (#669)
The init job has been failing on HPC using slurm due to out-of-memory errors. Now the init job specifies the amount of memory needed.
Fixes #631
commit 6874e8939211fdc07143450bfd1b6a2863172e10
Author: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
Date: Fri Feb 25 16:39:45 2022 -0500
Cleanup of utils directory (#660)
Removes all of the old, unused GSM scripts and code from the utils directory. Those codes that might still be used have been moved to a new GSM-utils repo.
Fixes #618
commit e3d64abc9c02aecb9d5d38755f6524bf9e277e66
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 24 22:49:45 2022 -0500
Fix bug with partition_batch on WCOSS (#668)
partition_batch was not being defined for WCOSS machines, but was
being used in a substitution for config.base.
Fixes #667
commit 9d75d8d78037c7a74d1a9c61a88d9d6a7e9b3be9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Mon Feb 21 02:10:00 2022 -0500
Split output filetype variable into atm and sfc (#602)
The determination of the FV3 output filetype was a bit unwieldy as it
contained two different settings (one for the atmosphere and one for
the surface) that were not necessarily changed at the same time. They
were also being determined in a different location than other settings
based on the model resolution.
Now the old OUTPUT_FILETYPES variable has been split into two different
variables, OUTPUT_FILETYPES_ATM and OUTPUT_FILETYPES_SFC. The determi-
nation was also moved into the config.fv3 file, where other resolution-
dependent computational settings are set.
This has resulted in some functional change on WCOSS Dell, as the EnKF
was using different chunking settings and never used parallel output
for the surface likely because wasn't being run at a low enough resolu-
tion to consider it. However, there is no reason to believe the two
forecast modes should have different chunk or output settings. So, I've
used the EnKF chunking settings and the free forecast switchover point
for the surface output mode.
The new filetype settings are now also divorced from the OUTPUT_FILE
setting. However, that setting will soon be unnecessary as nemsio
is removed from the code as an option (see Issue #601).
Fixes #600
Refs #601
commit cb8b5adf16200e7b01b8236a960efce5b6d8ce5d
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 17 15:55:24 2022 -0500
Correct MODE comparisons for forecast only (#658)
When the setup_expt scripts were combined, the forecast mode became a mandatory
argument. The value of this option is then directly used for the MODE variable,
but the argument name (forecast-only) does not match what was previously used
for MODE in the forecast-only script (free) and some scripts were still testing
against the old value instead of the new one. Those comparisons have now been
updated to use the new MODE name.
Fixes #657
commit f8867d3f0b1f3b5d238dced412996c56e30d31a1
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Thu Feb 10 20:23:54 2022 -0500
Add LOCALARCH option (#628)
Adds the option to archive output locally during archive jobs. This is intended for systems that do not have access to HPSS (e.g. Orion and soon S4), but can be used on any machine. To enable, the LOCALARCH setting in config.base should be set to "YES" (HPSSARCH must be "NO"). When enabled, the tarballs normally created on HPSS will instead be created in the local directory specified by $ATARDIR.
Defaults have been added to setup_expt.py to point to a local ATARDIR and LOCALARCH (currently =NO).
Fixes #624.
commit 2950c7b97f99341caa738526138022987f665627
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Feb 10 18:07:43 2022 -0500
Turn on fractional grid by default for uncoupled forecasts (#638)
Updates input.nml so that there is more consistency between the cpl and standalone atm input.nml. In particular this addresses the fact that frac_grid was only being set if cpl was true.
Fixes #571
commit 64b1c1e5ce37fba48dd717bd11356a6f57d9def4
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Feb 9 17:02:39 2022 -0500
Specify warm start as .true. or .false. (#644)
Corrects the assignment of EXP_WARM_START to either .true. or .false. depending on the value passed to setup_expt.py via `--start`.
Fixes #643
commit e537f0cecabc8e16e26b14e606558de906b19e3f
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 23:33:21 2022 -0500
Archive TC tracking logs if produced (#627)
The archive job was failing if there were no tropical cyclone files (such as when there are no cyclones). This adds a check for the TC tracking logs in case they are not produced to prevent the gfsarch job from failing on cycles when there were no TCs to track.
Fixes #625.
commit 32f93becde5ffa07c162252b95417845f2ab5159
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:59:37 2022 -0500
Fix separate threading for GFS and GDAS forecasts. (#621)
Fix separate threading options for GDAS and GFS forecasts (#610). This is performed by keeping nth_fcst_gfs separate from nth_fcst and declaring the new variable npe_node_fcst_gfs.
Fixes #610
commit 9bb09a92c55d4534feca5d521fbbd1c664730317
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:58:05 2022 -0500
Updated the RadMon and OznMon links. #596 (#597)
commit 97ebc4d4e6483b135468d85cd9ed974f88955914
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Thu Feb 3 02:56:34 2022 -0500
Unify `setup_expt.py` and `setup_expt_fcstonly.py` (#537)
`setup_expt.py` and `setup_expt_fcstonly.py` are unified under the former name.
The user is now required to provide a `mode` as the first positional argument to `setup.py`. Valid options are `cycled` and `forecast-only`.
```
❯ python3 setup_expt.py -h
usage: setup_expt.py [-h] {cycled,forecast-only} ...
Setup files and directories to start a GFS parallel. Create EXPDIR, copy config files. Create COMROT experiment directory structure, link
initial condition files from $ICSDIR to $COMROT
positional arguments:
{cycled,forecast-only}
cycled arguments for cycled mode
forecast-only arguments for forecast-only mode
optional arguments:
-h, --help show this help message and exit
```
Upon choosing one of these modes, options specific to the mode can be realized as follows for the `forecast-only` and `cycled` modes respectively.
```
❯ python3 setup_expt.py forecast-only -h feature/unify-setups
usage: setup_expt.py forecast-only [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--app {ATM,ATMW,S2S,S2SW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--app {ATM,ATMW,S2S,S2SW}
UFS application
```
```
❯ python3 setup_expt.py cycled -h feature/unify-setups
usage: setup_expt.py cycled [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--resens RESENS] [--nens NENS] [--app {ATM,ATMW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--resens RESENS resolution of the ensemble model forecast
--nens NENS number of ensemble members
--app {ATM,ATMW} UFS application
```
Note, `cycled` mode presents some extra options e.g. `nens` as well as a reduced list of the UFS weather model applications.
The functionality of `--icsdir` had been broken for cycled and was hard-coded in free forecast. The functionality has now been repaired for cycled. If you provide one, $COMROT will be populated with appropriate links. If none is specified, no links will be created in $COMROT. In coupled mode free-forecast, ICs are copied *to* icsdir from the central maintained prototype location. Coupled users will now need to set this explicitly. For non-coupled forecast-only, this setting currently does nothing.
The default value for `--configdir` has been updated to the appropriate location in the workflow. Most users will no longer need to set it unless they want to point to a different config source.
The default values for `--comrot` and `--expdir` are updated from None to $HOME to facilitate offline testing of workflow creation.
There are some irrelevant sections such as `gfs_cyc` in forecast-only that is still preserved in this PR. It will be cleaned up in subsequent PR's.
Another unnecessary complication is the argument of `--start`. The logic presented here would ideally be selected at runtime based on the type of IC's populated in comrot. It is left unchanged.
commit d7319f19aceca6ae6d7ce9b06c6eb731832d1de1
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:19:43 2022 -0500
Stop archiving gfsarch.log as it is being written (#581)
The gfs archive job was failing because it was attempting to archive its own log file into gfsa.tar while it was being written. To exclude that file pattern, bash extended globbing is turned on, which allows the use of a negating group.
Fixes: #558
commit 1b300dbf98eccdf03117b3795a2d8da3310a6126
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:18:55 2022 -0500
Fix build on non-WCOSS2 machines (#612)
The UFS_UTILS and GLDAS versions are updated to correct build problems on development machines. Each had been using a beta version of ESMF that was removed from the hpc-stack installation without warning. Additionally, GLDAS had introduced bugs into their build scripts during the WCOSS2 port. These issues are now all corrected in the new versions.
Also updates the UFS_UTILS repository to its new location under UFS instead of EMC.
Fixes #476, #561
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb702 e5cd63693
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11ef 0740b5b6c
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74bb fc48af56d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013decd ce66c74bb
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea52 7a166da9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2c 5c042e087
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4c cfca8bb2c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f55583 fba8cef5b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d11 e08f55583
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb39 e08f55583
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f1 b2879fe9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376bab e09a398f1
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit b2879fe9f90def631047f533db2144858d827023
Merge: 68b9157bd a8ed770d9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 10:07:05 2021 -0400
Merge pull request #326 from NOAA-EMC/release/gfsv16.1.1
GFSv16.1.1
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc1 6bad810bc
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77afd e3fcfebc1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed39 e3fcfebc1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops update…
jkhender
added a commit
to jkhender/global-workflow
that referenced
this pull request
May 23, 2022
Squashed commit of the following:
commit cabf437044cb937caf7a7830068fd9e413c5921f
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Wed Mar 30 21:28:50 2022 -0400
Update model and settings for Prototype P8b (#681)
Updates model and setting defaults for prototype 8b.
The UFS version is updated to a recent version of UFS (tag Prototype-P8b). As part of this, the print_esmf option is removed from the model configure file and replaced with a new setting in nems.configure. We have not made this option user-configurable at this point, but that may come in the future.
The default CCPP suites have been updated for all modes to either FV3_GFS_v17_p8 or FV3_GFS_v17_coupled_p8. This involves changing the microphysics to Thompson and changes the gravity wave drag version (knob_ugwp_version) to 0. This change breaks cycled mode for the time being. A future PR will revert the defaults to ones that allow cycled to run along with a more robust system for changing settings.
Tiled fix files are now used for all modes instead of just coupled.
Cellular automata now defaults on ON.
There are also other miscellaneous settings that have had their defaults changed.
Fixes #641, #687
commit e3f707cb9c05b45e9d4019679e406f54008279a5
Author: XuLi-NOAA <55100838+XuLi-NOAA@users.noreply.github.com>
Date: Thu Mar 24 05:43:31 2022 -0400
Modify eobs for EnKF thinning
In the Hybrid EnKF GSI, the thinning box size, dmesh, is different for the full resolution analysis and EnKF respectively. There are set in GSI scripts for the full resolution analysis, and reset in global workflow in config.eobs.
Only two thinning box sizes, dmesh(1) & dmesh(2), are defined in GSI scripts before, recently, two more, dmesh(3) & dmesh(4) are added. Accordingly, these two need to be added in config.eobs as well.
Specifically, add dmesh(3)=225.0,demsh(4)=100.0 to config.eobs.
Fixes #595
commit c32eea459af3177cee28e151b43fe5e12bdfc412
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 22 11:18:10 2022 -0400
Update ocean resolution for C48 (#651)
The ocean resolution for C48 was set as 1-deg, but the fractional
grid fix files available at C48 are for a 4-deg ocean grid. The
ocean resolution is now set to this value when FV3 is C48.
Also commented out a currently redundant block setting OCNRES in
config.ocn. The one in ecfs has to stay as it recalculates the
ocean resolution based on the EnKF resolution.
Fixes #650
commit d758e8b227fca7b5a3320adc43c29ba492c3bfe9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Mar 10 05:54:49 2022 -0500
Add single forecast GOCART support (#659)
Adds support for running single coupled free forecasts with GOCART aerosols. Support for continuous aerosol fields from cycle to cycle will be added in a future PR.
To turn on aerosols, there is a new --aerosols option for setup_expt.py. The option takes no arguments. When it is used, aerosols will be turned on by setting DO_AERO="YES" in config.base.
GOCART output files are placed in the chem directory in COM.
There is a new tarball archived, chem.tar, that contains the GOCART output.
Partially addresses #516
Fixes #403
commit a0e23e254c7c881b20d66c1c53cd36de509e6d69
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 1 10:50:39 2022 -0500
Specify memory for init job (#669)
The init job has been failing on HPC using slurm due to out-of-memory errors. Now the init job specifies the amount of memory needed.
Fixes #631
commit 6874e8939211fdc07143450bfd1b6a2863172e10
Author: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
Date: Fri Feb 25 16:39:45 2022 -0500
Cleanup of utils directory (#660)
Removes all of the old, unused GSM scripts and code from the utils directory. Those codes that might still be used have been moved to a new GSM-utils repo.
Fixes #618
commit e3d64abc9c02aecb9d5d38755f6524bf9e277e66
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 24 22:49:45 2022 -0500
Fix bug with partition_batch on WCOSS (#668)
partition_batch was not being defined for WCOSS machines, but was
being used in a substitution for config.base.
Fixes #667
commit 9d75d8d78037c7a74d1a9c61a88d9d6a7e9b3be9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Mon Feb 21 02:10:00 2022 -0500
Split output filetype variable into atm and sfc (#602)
The determination of the FV3 output filetype was a bit unwieldy as it
contained two different settings (one for the atmosphere and one for
the surface) that were not necessarily changed at the same time. They
were also being determined in a different location than other settings
based on the model resolution.
Now the old OUTPUT_FILETYPES variable has been split into two different
variables, OUTPUT_FILETYPES_ATM and OUTPUT_FILETYPES_SFC. The determi-
nation was also moved into the config.fv3 file, where other resolution-
dependent computational settings are set.
This has resulted in some functional change on WCOSS Dell, as the EnKF
was using different chunking settings and never used parallel output
for the surface likely because wasn't being run at a low enough resolu-
tion to consider it. However, there is no reason to believe the two
forecast modes should have different chunk or output settings. So, I've
used the EnKF chunking settings and the free forecast switchover point
for the surface output mode.
The new filetype settings are now also divorced from the OUTPUT_FILE
setting. However, that setting will soon be unnecessary as nemsio
is removed from the code as an option (see Issue #601).
Fixes #600
Refs #601
commit cb8b5adf16200e7b01b8236a960efce5b6d8ce5d
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 17 15:55:24 2022 -0500
Correct MODE comparisons for forecast only (#658)
When the setup_expt scripts were combined, the forecast mode became a mandatory
argument. The value of this option is then directly used for the MODE variable,
but the argument name (forecast-only) does not match what was previously used
for MODE in the forecast-only script (free) and some scripts were still testing
against the old value instead of the new one. Those comparisons have now been
updated to use the new MODE name.
Fixes #657
commit f8867d3f0b1f3b5d238dced412996c56e30d31a1
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Thu Feb 10 20:23:54 2022 -0500
Add LOCALARCH option (#628)
Adds the option to archive output locally during archive jobs. This is intended for systems that do not have access to HPSS (e.g. Orion and soon S4), but can be used on any machine. To enable, the LOCALARCH setting in config.base should be set to "YES" (HPSSARCH must be "NO"). When enabled, the tarballs normally created on HPSS will instead be created in the local directory specified by $ATARDIR.
Defaults have been added to setup_expt.py to point to a local ATARDIR and LOCALARCH (currently =NO).
Fixes #624.
commit 2950c7b97f99341caa738526138022987f665627
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Feb 10 18:07:43 2022 -0500
Turn on fractional grid by default for uncoupled forecasts (#638)
Updates input.nml so that there is more consistency between the cpl and standalone atm input.nml. In particular this addresses the fact that frac_grid was only being set if cpl was true.
Fixes #571
commit 64b1c1e5ce37fba48dd717bd11356a6f57d9def4
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Feb 9 17:02:39 2022 -0500
Specify warm start as .true. or .false. (#644)
Corrects the assignment of EXP_WARM_START to either .true. or .false. depending on the value passed to setup_expt.py via `--start`.
Fixes #643
commit e537f0cecabc8e16e26b14e606558de906b19e3f
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 23:33:21 2022 -0500
Archive TC tracking logs if produced (#627)
The archive job was failing if there were no tropical cyclone files (such as when there are no cyclones). This adds a check for the TC tracking logs in case they are not produced to prevent the gfsarch job from failing on cycles when there were no TCs to track.
Fixes #625.
commit 32f93becde5ffa07c162252b95417845f2ab5159
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:59:37 2022 -0500
Fix separate threading for GFS and GDAS forecasts. (#621)
Fix separate threading options for GDAS and GFS forecasts (#610). This is performed by keeping nth_fcst_gfs separate from nth_fcst and declaring the new variable npe_node_fcst_gfs.
Fixes #610
commit 9bb09a92c55d4534feca5d521fbbd1c664730317
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:58:05 2022 -0500
Updated the RadMon and OznMon links. #596 (#597)
commit 97ebc4d4e6483b135468d85cd9ed974f88955914
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Thu Feb 3 02:56:34 2022 -0500
Unify `setup_expt.py` and `setup_expt_fcstonly.py` (#537)
`setup_expt.py` and `setup_expt_fcstonly.py` are unified under the former name.
The user is now required to provide a `mode` as the first positional argument to `setup.py`. Valid options are `cycled` and `forecast-only`.
```
❯ python3 setup_expt.py -h
usage: setup_expt.py [-h] {cycled,forecast-only} ...
Setup files and directories to start a GFS parallel. Create EXPDIR, copy config files. Create COMROT experiment directory structure, link
initial condition files from $ICSDIR to $COMROT
positional arguments:
{cycled,forecast-only}
cycled arguments for cycled mode
forecast-only arguments for forecast-only mode
optional arguments:
-h, --help show this help message and exit
```
Upon choosing one of these modes, options specific to the mode can be realized as follows for the `forecast-only` and `cycled` modes respectively.
```
❯ python3 setup_expt.py forecast-only -h feature/unify-setups
usage: setup_expt.py forecast-only [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--app {ATM,ATMW,S2S,S2SW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--app {ATM,ATMW,S2S,S2SW}
UFS application
```
```
❯ python3 setup_expt.py cycled -h feature/unify-setups
usage: setup_expt.py cycled [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--resens RESENS] [--nens NENS] [--app {ATM,ATMW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--resens RESENS resolution of the ensemble model forecast
--nens NENS number of ensemble members
--app {ATM,ATMW} UFS application
```
Note, `cycled` mode presents some extra options e.g. `nens` as well as a reduced list of the UFS weather model applications.
The functionality of `--icsdir` had been broken for cycled and was hard-coded in free forecast. The functionality has now been repaired for cycled. If you provide one, $COMROT will be populated with appropriate links. If none is specified, no links will be created in $COMROT. In coupled mode free-forecast, ICs are copied *to* icsdir from the central maintained prototype location. Coupled users will now need to set this explicitly. For non-coupled forecast-only, this setting currently does nothing.
The default value for `--configdir` has been updated to the appropriate location in the workflow. Most users will no longer need to set it unless they want to point to a different config source.
The default values for `--comrot` and `--expdir` are updated from None to $HOME to facilitate offline testing of workflow creation.
There are some irrelevant sections such as `gfs_cyc` in forecast-only that is still preserved in this PR. It will be cleaned up in subsequent PR's.
Another unnecessary complication is the argument of `--start`. The logic presented here would ideally be selected at runtime based on the type of IC's populated in comrot. It is left unchanged.
commit d7319f19aceca6ae6d7ce9b06c6eb731832d1de1
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:19:43 2022 -0500
Stop archiving gfsarch.log as it is being written (#581)
The gfs archive job was failing because it was attempting to archive its own log file into gfsa.tar while it was being written. To exclude that file pattern, bash extended globbing is turned on, which allows the use of a negating group.
Fixes: #558
commit 1b300dbf98eccdf03117b3795a2d8da3310a6126
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:18:55 2022 -0500
Fix build on non-WCOSS2 machines (#612)
The UFS_UTILS and GLDAS versions are updated to correct build problems on development machines. Each had been using a beta version of ESMF that was removed from the hpc-stack installation without warning. Additionally, GLDAS had introduced bugs into their build scripts during the WCOSS2 port. These issues are now all corrected in the new versions.
Also updates the UFS_UTILS repository to its new location under UFS instead of EMC.
Fixes #476, #561
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb702 e5cd63693
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11ef 0740b5b6c
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74bb fc48af56d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013decd ce66c74bb
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea52 7a166da9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2c 5c042e087
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4c cfca8bb2c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f55583 fba8cef5b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d11 e08f55583
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb39 e08f55583
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f1 b2879fe9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376bab e09a398f1
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit b2879fe9f90def631047f533db2144858d827023
Merge: 68b9157bd a8ed770d9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 10:07:05 2021 -0400
Merge pull request #326 from NOAA-EMC/release/gfsv16.1.1
GFSv16.1.1
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc1 6bad810bc
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77afd e3fcfebc1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed39 e3fcfebc1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
udate config.base.emc.dyn
high resolution MERRA2 data used
fixed a bug related to orion
added merra2 input and update diag_table
merra2 workflow for orion
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
commit 4641c5d206a95e0e66276fa86d46ecd580213fd5
Merge: eff8a1258 e3fcfebc1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 19 14:51:19 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit e3fcfebc1ff9c9f9ceda7b775de0c34117de6459
Merge: 95e0dffea fa5d1e2ba
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 19 10:02:19 2021 -0400
Merge pull request #254 from AnningCheng-NOAA/merra2
Addition of support for MERRA2
commit fa5d1e2ba242a08e26cb7bac8c68b700a83d1d60
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue May 18 10:41:16 2021 -0400
change fv3gfs checkout head
commit 283c4a044847bbadd0cef46e14dde4de97abe986
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 17 15:56:56 2021 -0400
fixed a compilation error, NEMs/exe existing, in hera
commit 6b574160f94329754677e7f4541ab07c44185bb0
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Fri May 14 13:44:18 2021 +0000
build_fv3.sh with ATM
commit dfc8aa9a2cf5370fff38520d2a28f3960be3b583
Merge: bf5d11063 95e0dffea
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed May 12 20:11:44 2021 +0000
Merge remote-tracking branch 'upstream/develop' into merra2
commit eff8a1258aa70c061fe69697388f8914935726ee
Merge: b1ad0b963 95e0dffea
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 12 19:15:17 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit 95e0dffea435af17be9150fcd0c842763768b45f
Merge: fc727f405 dd4d18790
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 12 14:51:10 2021 -0400
Merge pull request #323 from NOAA-EMC/sync/operations_v16.0.9
Bring operations branch v16.0.9 changes into develop
commit dd4d1879093516a7950c9e0e59f6e44e462199f6
Merge: fc727f405 68b9157bd
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 10 16:40:13 2021 +0000
Merge remote-tracking branch 'origin/operations' into sync/operations_v16.0.9
* origin/operations:
bugfix for not removing last point from list in wave post pnt jobs
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
Refs: #309
commit 8def77afd4a9f1cd6cdca42c956bc7ebf675a58d
Merge: c6e2a96e8 d46e8cf49
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 10 11:45:02 2021 -0400
Merge pull request #322 from JessicaMeixner-NOAA/hpcstackww3
Updates for ww3 pre and post exec builds for hpc-stack
commit d46e8cf49aff0dbf72e457f1177e10e6f50252a6
Author: Jessica Meixner <Jessica.Meixner@noaa.gov>
Date: Mon May 10 15:31:56 2021 +0000
update for ww3_pre/post build:
-- remove ww3 specific module files
-- updated module base files to be in sync with ufs-weather-model
except that jasper is a more recent version which is needed for ww3_grib
-- added extra ww3 execs needed for this branch
-- added ww3prepost build to build_all and partial build
commit c6e2a96e86611cce00455609d9be803d580e7bc0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:30:13 2021 +0000
Change fix file linking to scan for possible subfolders in set
- instead of providing subfolder names, scan for subfolders in FIX_DIR path
and then create symlinks based on existing subfolders in set
- will not have to keep updating list of subfolders now
Refs: #164
commit aa1d1e9ca1d8521ef22e1bdb654d4a70e7b1e29e
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:27:13 2021 +0000
Change CCPP_SUITE from FV3_GFS_v16beta to FV3_GFS_v16
- newer ufs-weather-model hash supports FV3_GFS_v16 suite
Refs: #164
commit a8ed770d9c1e8614c5477d0129d6eaf5fe4e2085
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:32:36 2021 +0000
Companion update to Externals.cfg for WAFS tag update to gfs_wafs.v6.0.22
Refs: #1,#321
commit 68d9b5b5ff072b1f62131a9f7495c33c14c4a850
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:28:17 2021 +0000
WAFS tag update to gfs_wafs.v6.0.22 for bug fix
Refs: #1,#321
commit 68b9157bd59278dc07369d316999d3c8485ebf7c
Merge: 1f5af6283 97fe99096
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 5 10:50:42 2021 -0400
Merge pull request #306 from NOAA-EMC/release/gfsv16.0.0_to_ops
GFSv16.0.9
commit 1aea3ee393c99d4f76556fbbdbebc43f629558c2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:30:06 2021 +0000
Add build script and modulefiles for WW3 build
- WW3 execs no longer built by FV3 build, need separate build now
- add new build_ww3prepost.sh script for building WW3 execs in ufs-weather-model checkout
- add modulefiles for WCOSS-Dell, Hera, and Orion
Refs: #164
commit 214431a2c04f6e685e966810621fc2fae771d2f5
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:26:00 2021 +0000
Update WAFS execs to include .x
- update WAFS exec names in link_fv3gfs.sh to include ".x" extension that was added with new version
Refs: #164
commit eb1613764794a35d165e55423682ed592b2aaacb
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:22:06 2021 +0000
ufs-weather-model hash update for WW3 support with hpc-stack
- update ufs-weather-model hash to 554aedcd63e4a7c5012570406132eaf76e249ca9
- update build_fv3.sh for new compile arguments for CCPP/WW3 build
Refs: #164
commit b1ad0b96328a54112ecc13ff4b71dcc08556a8c1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 5 14:13:58 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.1
Refs: #315
commit c206e8d2606f14ee6188740f881673ff512b866b
Author: Mallory Row <mallory.row@noaa.gov>
Date: Mon May 3 19:16:42 2021 +0000
Fix typo in config.metp
There was a typo in the grid-to-obs METviewer related config variables.
The variables started with "g2g1" instead of "g2o1".
Refs: #315
commit f9013decd5af75f66eda619175bacc7549f4746a
Author: Brian Curtis <Brian.Curtis@noaa.gov>
Date: Mon May 3 14:37:13 2021 -0400
Files to test for python3 compatibility
commit 0b9607711900e0da0de3d3dc1af91cc4dc9dd04d
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 12:31:01 2021 -0400
Update v16.1 release notes with wave script fix
Refs: #301
commit fda26e9010ef59f69cd378c3092bdc82e57e4ec2
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date: Mon May 3 12:08:12 2021 -0400
Update config.base.nco.static
Change HOMEobsproc_prep and HOMEobsproc_network to point at NCO installation of these packages.
commit f9a6dd71ef7d580d6b83f50eb53814a06a944577
Merge: 173bb4814 97fe99096
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 11:55:09 2021 -0400
Merge branch 'release/gfsv16.0.0_to_ops' into release/gfsv16.1
Include wave fixes in v16.1
Refs: #301
commit 173bb4814ed2d2bc6e3436263f55c199f8dc8721
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 11:52:42 2021 -0400
Update v16.1 release notes for wave fixes
Refs: #301
commit 858f216330d7ab71137afe6331f6576fec413aee
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:19:56 2021 +0000
Update EMC_post, UFS_UTILS, EMC_gfs_wafs versions in Externals.cfg
Refs: #164
commit 6ce83363726ece6dbd34719430dd44f5e63bbc3c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:14:54 2021 +0000
Component updates for UPP, WAFS, UFS_UTILS
- new tag in checkout for UFS_UTILS to use hpc/1.1.0
- new hash in checkout for UPP/EMC_post to support GTG and GTG code copy fix
- new hash in checkout for WAFS/EMC_gfs_wafs to support hpc-stack
- build script update for WAFS (cmake/stack)
- WAFS GCIP config update to fix runtime error
Refs: #164
commit 709095709ca60498d05ea0f519b494501e1ecdf2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:11:51 2021 +0000
Update util_shared to 1.3.0 on WCOSS-Dell
- version changed in production for v16.0.9 footer fix
Refs: #164
commit bf5d110632fc67653441e6830bfdcdddda906706
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 3 10:53:37 2021 -0400
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
commit 97fe990968955486fe2b7f3035c9d9423cef5e3e
Merge: c582db288 f0fd3d410
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 3 09:15:15 2021 -0400
Merge pull request #318 from JessicaMeixner-NOAA/v16/bugforpnt
Bug fix for missing buoy in wave post point
commit f0fd3d4108debaa61f000ac700fd90904f1b600b
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date: Fri Apr 30 17:56:34 2021 +0000
bugfix for not removing last point from list in wave post pnt jobs
commit fb47a5a0f7391f670461b00eaf324c3b0102ef1f
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Apr 28 17:50:15 2021 +0000
Update TC_tracker version in config.vrfy
- new TC_tracker.v1.1.15.4 was made available by Jiayi Peng
- new version supports hpc-stack on supported platforms
- installed locally on WCOSS-Dells, Hera, and Orion
Refs: #164
commit 587ac0c914430d5b887327d7c566c452d2eace62
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed Apr 28 10:36:49 2021 -0400
changes added in link_fv3gfs for fix_aer
commit 48690cd07ceeb90c6808346a04a31a6166505c86
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed Apr 28 14:00:46 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.0
commit 1d0e0c29979101b451f1fda265af3f9a716bb9de
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Apr 27 19:33:09 2021 +0000
Reverting resource related changes
- will commit resource adjustments separately
Refs: #164
commit 101905ce4d92a544d353700b0acdc137aa61b088
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue Apr 27 14:15:59 2021 -0400
changed fix dir for link_fv3gfs
commit 3271bac5b2072bfa2c0c0d229f050b647cd28925
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Tue Apr 27 10:08:54 2021 -0400
Update Externals.cfg and release notes for v16.1
Updated Externals.cfg GSI tag to gfsda.v16.1.0. Added sections in the
release notes to explicitly say no changes to parm/config and scripts.
Refs: #301
commit 31389bc23b89b1713712da17c8f226b649286b40
Merge: b1e924cd4 c582db288
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Tue Apr 27 08:31:41 2021 -0400
Merge branch 'release/gfsv16.0.0_to_ops' into release/gfsv16.1
This update brings in the wave foot fix for GFSv16.0.9.
Refs: #301
commit b1e924cd44eba056443cb2a6789b1dc8040a02e1
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Tue Apr 27 07:31:44 2021 -0400
Change GSI tag to gfsda.v16.1.0
The GSI tag has been updated for the v16.1 implementation. This
implementation turns on commercial RO data from GeoOptics. See
release notes docs/Release_Notes.gfs.v16.1.0.txt in the global-workflow
and release notes doc/Release_Notes.gfsda.v16.1.0.txt in the GSI for
details.
Refs: #301
commit 3142a8219c74b7b33a2bee1aed4ed7acd34ed0dc
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon Apr 26 16:59:43 2021 -0400
Add Release Notes for GFSv16.1
Added the file docs/Release_Notes.gfs.v16.1.0.txt to release branch
release/gfsv16.1.
Refs: #301
commit 7cd6e0e3000a47b39fa0c7e75ad66150e96385d8
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 14:44:03 2021 +0000
Fix setting of 'SDATE_GFS' for free forecast XML
In the workflow XML for free forecasts there is no SDATE_GFS
variable. The 'SDATE_GFS' variable was changed to be set to the
value of 'SDATE'.
Refs: #315
commit d34b99d4e3d369b784fd9d2c639a0bddd1bbfc0c
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 12:59:51 2021 +0000
Clean up and add new settings in metp.sh
SDATE_GFS was added into the script preamble following the
addition of the variable being added as a rocoto exported
environment variable for metp tasks.
Config.vrfy was removed from the list of relevant configs
to source.
Variables CDATEm1 and PDYm1 were removed and replaced with
VDATE. VDATE is the verification date to be done by the metp
tasks based on VRFYBACK_HRS set in config.metp.
Lines were added to catch the exit status of VERIFGLOBAL_SH
and to exit if not succesfully run so it can be caught by
rocoto.
Refs: #315
commit 998f1a454427dedd46bb20b36e381bedbdf3e349
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri Apr 23 12:49:38 2021 +0000
Revamp of config.metp
Following the EMC_verif-global configuration remake, config.metp
has been revamped to support the new configuration settings.
Refs: #315
commit 6a01ae405202b8984fe8efa73573d7fdba2b74d2
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu Apr 22 17:17:14 2021 +0000
Add 'SDATE_GFS' rocoto env var for metp tasks
The connector script between EMC_verif-global and global-workflow
run_verif_global_in_global_workflow.sh (housed in EMC_verif-global)
contains a new feature that checks the maximum forecast hour for
verification is the hour's initialization date is equal to or after
the first GFS cycle initialization. If the date is before, the
maximum forecast hour is adjusted to the maximum hour relative to
the forecast verification date and the first GFS cycle initialization.
This feature was added to cut down on METplus calls being done
on data that don't exist.
Refs: #315
commit dfec5816add3c56721360a418ec9f3459cfd4d8c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 15:27:56 2021 +0000
Update UFS_UTILS hash to 9d9dd23e37a51fcc5ff6b7499b834c85ab32e5f3
Refs: #164
commit be564bb85eeefbb1699992e0ed4f0705e4e2ee24
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Thu Apr 22 11:22:02 2021 -0400
changes on build_fv3.sh and symlinks to optical data files instead of cp
commit 15c6619c6e211eb67ca6aa5c995e4a3bf4cf586f
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 14:03:46 2021 +0000
Adjust C768 fcst thread value for reduced node usage
- change C768 nth_fv3_gfs value from 7 to 2
Refs: #164
commit ece41632a76e697184a46bb2a428c35ccdf08305
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Apr 22 13:58:22 2021 +0000
Add separate gfs resource variables to fcst in config.resources
Refs: #164
commit 00c18b5e341d601fd83da2f9df2ac928e8dcf7c8
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:44:13 2021 +0000
Update FIX_DIR paths in link_fv3gfs.sh
- change platform FIX_DIR paths from fix_nco_gfsv16 set to developmental fix set for v17+
Refs: #164
commit b6c392c7569ed909d6b0b27c0f6a4f828b7acdfd
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:40:25 2021 +0000
Set DO_WAVE=NO in config.base
- set default DO_WAVE setting to NO in config.base.emc.dyn
- turn off waves until hpc-stack for WW3 execs build is ready
Refs: #164
commit 2b703d335b8e3e97c9764bd60d87188ed11938fd
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:17:28 2021 +0000
Set WAFS checkout to be optional with -o flag
- add checkout_wafs to -o flag settings
Refs: #164
commit 305bf5e0fb3c665cf71f10023feed1a121be329b
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 13:01:04 2021 +0000
Update Externals.cfg to match checkout.sh versions
Refs: #164
commit 3cc02d507df48e2b9f99163d737123e5b5c716c0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Apr 22 12:52:46 2021 +0000
Update GLDAS and UFS_UTILS checkouts
- update GLDAS checkout t…
jkhender
added a commit
to jkhender/global-workflow
that referenced
this pull request
Jun 17, 2022
Add updates for GSL to run new HFIP models on Jet
commit 1a1a524433b2dba903680515218eea694e9c8ada
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri Jun 17 06:28:07 2022 +0000
Updates for running on Jet
- update environment file, env/JET.env
- update module_base.jet file to use hpc-stack libraries
- update jet files under modulefiles/
- create GSL and EMC versions of vrfy.sh; create link to GSL version
- update paths on Jet in config.vrfy
- update variables in post XML files in gfs_post.fd_gsl directory
- delete ens_tracker.v1.1.15.2 directory
- add ens_tracker.v1.1.15.4 directory (with Dave Huber's modifications for jet)
commit e86bdf12053801cad1a07d47f8630b9e9a7c005e
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Fri May 27 16:47:48 2022 +0000
Restore setup experiment script, ffl127.sh
commit 92b4376121e8e9b08659487e574c077005c2b9d5
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Thu May 26 00:06:39 2022 +0000
Updates for GSL
- change settings for shal_cnv and imfshalcnv for FV3_GFS_v17_p8_mynn suite in config.fcst
- added new experiment setup scripts
commit 8a7e0250832b39df39c16b1bcf01477b51048b22
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Wed May 25 10:44:51 2022 +0000
Updates for GSL
- set imp_physics=8 default in config.base
- modified if statement for setting imfdeepcnv/imfshalcnv in config.fcst
commit 0681b9f8c2838b2861b68f13efd47e6a745d5059
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Wed May 25 00:16:30 2022 +0000
Updates for GSL
- update UFS to NOAA-GSL:gsl/develop 23May22 branch, -7b0be42, in checkout.sh
- add Build_gsi=false to build_all.sh
- remove FV3_GFS_v16_RRTMGP suite from build_ufs.sh
- add FV3_GFS_v17_p8,FV3_GFS_v17_p8_gf,FV3_GFS_v17_p8_mynn suites to build_ufs.sh
- add sorc/ufs_model.fd_gsl directory for new SDFs (FV3_v17_p8_gf, FV3_v17_p8_mynn)
commit 7313f5edd7806320736b35183969c35838465c7d
Author: Judy.K.Henderson <Judy.K.Henderson@noaa.gov>
Date: Mon May 23 19:36:04 2022 +0000
Merged NOAA-EMC/develop 30Mar22 branch into gslv16_dev
Squashed commit of the following:
commit cabf437044cb937caf7a7830068fd9e413c5921f
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Wed Mar 30 21:28:50 2022 -0400
Update model and settings for Prototype P8b (#681)
Updates model and setting defaults for prototype 8b.
The UFS version is updated to a recent version of UFS (tag Prototype-P8b). As part of this, the print_esmf option is removed from the model configure file and replaced with a new setting in nems.configure. We have not made this option user-configurable at this point, but that may come in the future.
The default CCPP suites have been updated for all modes to either FV3_GFS_v17_p8 or FV3_GFS_v17_coupled_p8. This involves changing the microphysics to Thompson and changes the gravity wave drag version (knob_ugwp_version) to 0. This change breaks cycled mode for the time being. A future PR will revert the defaults to ones that allow cycled to run along with a more robust system for changing settings.
Tiled fix files are now used for all modes instead of just coupled.
Cellular automata now defaults on ON.
There are also other miscellaneous settings that have had their defaults changed.
Fixes #641, #687
commit e3f707cb9c05b45e9d4019679e406f54008279a5
Author: XuLi-NOAA <55100838+XuLi-NOAA@users.noreply.github.com>
Date: Thu Mar 24 05:43:31 2022 -0400
Modify eobs for EnKF thinning
In the Hybrid EnKF GSI, the thinning box size, dmesh, is different for the full resolution analysis and EnKF respectively. There are set in GSI scripts for the full resolution analysis, and reset in global workflow in config.eobs.
Only two thinning box sizes, dmesh(1) & dmesh(2), are defined in GSI scripts before, recently, two more, dmesh(3) & dmesh(4) are added. Accordingly, these two need to be added in config.eobs as well.
Specifically, add dmesh(3)=225.0,demsh(4)=100.0 to config.eobs.
Fixes #595
commit c32eea459af3177cee28e151b43fe5e12bdfc412
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 22 11:18:10 2022 -0400
Update ocean resolution for C48 (#651)
The ocean resolution for C48 was set as 1-deg, but the fractional
grid fix files available at C48 are for a 4-deg ocean grid. The
ocean resolution is now set to this value when FV3 is C48.
Also commented out a currently redundant block setting OCNRES in
config.ocn. The one in ecfs has to stay as it recalculates the
ocean resolution based on the EnKF resolution.
Fixes #650
commit d758e8b227fca7b5a3320adc43c29ba492c3bfe9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Mar 10 05:54:49 2022 -0500
Add single forecast GOCART support (#659)
Adds support for running single coupled free forecasts with GOCART aerosols. Support for continuous aerosol fields from cycle to cycle will be added in a future PR.
To turn on aerosols, there is a new --aerosols option for setup_expt.py. The option takes no arguments. When it is used, aerosols will be turned on by setting DO_AERO="YES" in config.base.
GOCART output files are placed in the chem directory in COM.
There is a new tarball archived, chem.tar, that contains the GOCART output.
Partially addresses #516
Fixes #403
commit a0e23e254c7c881b20d66c1c53cd36de509e6d69
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 1 10:50:39 2022 -0500
Specify memory for init job (#669)
The init job has been failing on HPC using slurm due to out-of-memory errors. Now the init job specifies the amount of memory needed.
Fixes #631
commit 6874e8939211fdc07143450bfd1b6a2863172e10
Author: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
Date: Fri Feb 25 16:39:45 2022 -0500
Cleanup of utils directory (#660)
Removes all of the old, unused GSM scripts and code from the utils directory. Those codes that might still be used have been moved to a new GSM-utils repo.
Fixes #618
commit e3d64abc9c02aecb9d5d38755f6524bf9e277e66
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 24 22:49:45 2022 -0500
Fix bug with partition_batch on WCOSS (#668)
partition_batch was not being defined for WCOSS machines, but was
being used in a substitution for config.base.
Fixes #667
commit 9d75d8d78037c7a74d1a9c61a88d9d6a7e9b3be9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Mon Feb 21 02:10:00 2022 -0500
Split output filetype variable into atm and sfc (#602)
The determination of the FV3 output filetype was a bit unwieldy as it
contained two different settings (one for the atmosphere and one for
the surface) that were not necessarily changed at the same time. They
were also being determined in a different location than other settings
based on the model resolution.
Now the old OUTPUT_FILETYPES variable has been split into two different
variables, OUTPUT_FILETYPES_ATM and OUTPUT_FILETYPES_SFC. The determi-
nation was also moved into the config.fv3 file, where other resolution-
dependent computational settings are set.
This has resulted in some functional change on WCOSS Dell, as the EnKF
was using different chunking settings and never used parallel output
for the surface likely because wasn't being run at a low enough resolu-
tion to consider it. However, there is no reason to believe the two
forecast modes should have different chunk or output settings. So, I've
used the EnKF chunking settings and the free forecast switchover point
for the surface output mode.
The new filetype settings are now also divorced from the OUTPUT_FILE
setting. However, that setting will soon be unnecessary as nemsio
is removed from the code as an option (see Issue #601).
Fixes #600
Refs #601
commit cb8b5adf16200e7b01b8236a960efce5b6d8ce5d
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 17 15:55:24 2022 -0500
Correct MODE comparisons for forecast only (#658)
When the setup_expt scripts were combined, the forecast mode became a mandatory
argument. The value of this option is then directly used for the MODE variable,
but the argument name (forecast-only) does not match what was previously used
for MODE in the forecast-only script (free) and some scripts were still testing
against the old value instead of the new one. Those comparisons have now been
updated to use the new MODE name.
Fixes #657
commit f8867d3f0b1f3b5d238dced412996c56e30d31a1
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Thu Feb 10 20:23:54 2022 -0500
Add LOCALARCH option (#628)
Adds the option to archive output locally during archive jobs. This is intended for systems that do not have access to HPSS (e.g. Orion and soon S4), but can be used on any machine. To enable, the LOCALARCH setting in config.base should be set to "YES" (HPSSARCH must be "NO"). When enabled, the tarballs normally created on HPSS will instead be created in the local directory specified by $ATARDIR.
Defaults have been added to setup_expt.py to point to a local ATARDIR and LOCALARCH (currently =NO).
Fixes #624.
commit 2950c7b97f99341caa738526138022987f665627
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Feb 10 18:07:43 2022 -0500
Turn on fractional grid by default for uncoupled forecasts (#638)
Updates input.nml so that there is more consistency between the cpl and standalone atm input.nml. In particular this addresses the fact that frac_grid was only being set if cpl was true.
Fixes #571
commit 64b1c1e5ce37fba48dd717bd11356a6f57d9def4
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Feb 9 17:02:39 2022 -0500
Specify warm start as .true. or .false. (#644)
Corrects the assignment of EXP_WARM_START to either .true. or .false. depending on the value passed to setup_expt.py via `--start`.
Fixes #643
commit e537f0cecabc8e16e26b14e606558de906b19e3f
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 23:33:21 2022 -0500
Archive TC tracking logs if produced (#627)
The archive job was failing if there were no tropical cyclone files (such as when there are no cyclones). This adds a check for the TC tracking logs in case they are not produced to prevent the gfsarch job from failing on cycles when there were no TCs to track.
Fixes #625.
commit 32f93becde5ffa07c162252b95417845f2ab5159
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:59:37 2022 -0500
Fix separate threading for GFS and GDAS forecasts. (#621)
Fix separate threading options for GDAS and GFS forecasts (#610). This is performed by keeping nth_fcst_gfs separate from nth_fcst and declaring the new variable npe_node_fcst_gfs.
Fixes #610
commit 9bb09a92c55d4534feca5d521fbbd1c664730317
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:58:05 2022 -0500
Updated the RadMon and OznMon links. #596 (#597)
commit 97ebc4d4e6483b135468d85cd9ed974f88955914
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Thu Feb 3 02:56:34 2022 -0500
Unify `setup_expt.py` and `setup_expt_fcstonly.py` (#537)
`setup_expt.py` and `setup_expt_fcstonly.py` are unified under the former name.
The user is now required to provide a `mode` as the first positional argument to `setup.py`. Valid options are `cycled` and `forecast-only`.
```
❯ python3 setup_expt.py -h
usage: setup_expt.py [-h] {cycled,forecast-only} ...
Setup files and directories to start a GFS parallel. Create EXPDIR, copy config files. Create COMROT experiment directory structure, link
initial condition files from $ICSDIR to $COMROT
positional arguments:
{cycled,forecast-only}
cycled arguments for cycled mode
forecast-only arguments for forecast-only mode
optional arguments:
-h, --help show this help message and exit
```
Upon choosing one of these modes, options specific to the mode can be realized as follows for the `forecast-only` and `cycled` modes respectively.
```
❯ python3 setup_expt.py forecast-only -h feature/unify-setups
usage: setup_expt.py forecast-only [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--app {ATM,ATMW,S2S,S2SW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--app {ATM,ATMW,S2S,S2SW}
UFS application
```
```
❯ python3 setup_expt.py cycled -h feature/unify-setups
usage: setup_expt.py cycled [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--resens RESENS] [--nens NENS] [--app {ATM,ATMW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--resens RESENS resolution of the ensemble model forecast
--nens NENS number of ensemble members
--app {ATM,ATMW} UFS application
```
Note, `cycled` mode presents some extra options e.g. `nens` as well as a reduced list of the UFS weather model applications.
The functionality of `--icsdir` had been broken for cycled and was hard-coded in free forecast. The functionality has now been repaired for cycled. If you provide one, $COMROT will be populated with appropriate links. If none is specified, no links will be created in $COMROT. In coupled mode free-forecast, ICs are copied *to* icsdir from the central maintained prototype location. Coupled users will now need to set this explicitly. For non-coupled forecast-only, this setting currently does nothing.
The default value for `--configdir` has been updated to the appropriate location in the workflow. Most users will no longer need to set it unless they want to point to a different config source.
The default values for `--comrot` and `--expdir` are updated from None to $HOME to facilitate offline testing of workflow creation.
There are some irrelevant sections such as `gfs_cyc` in forecast-only that is still preserved in this PR. It will be cleaned up in subsequent PR's.
Another unnecessary complication is the argument of `--start`. The logic presented here would ideally be selected at runtime based on the type of IC's populated in comrot. It is left unchanged.
commit d7319f19aceca6ae6d7ce9b06c6eb731832d1de1
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:19:43 2022 -0500
Stop archiving gfsarch.log as it is being written (#581)
The gfs archive job was failing because it was attempting to archive its own log file into gfsa.tar while it was being written. To exclude that file pattern, bash extended globbing is turned on, which allows the use of a negating group.
Fixes: #558
commit 1b300dbf98eccdf03117b3795a2d8da3310a6126
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:18:55 2022 -0500
Fix build on non-WCOSS2 machines (#612)
The UFS_UTILS and GLDAS versions are updated to correct build problems on development machines. Each had been using a beta version of ESMF that was removed from the hpc-stack installation without warning. Additionally, GLDAS had introduced bugs into their build scripts during the WCOSS2 port. These issues are now all corrected in the new versions.
Also updates the UFS_UTILS repository to its new location under UFS instead of EMC.
Fixes #476, #561
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb702 e5cd63693
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11ef 0740b5b6c
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74bb fc48af56d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013decd ce66c74bb
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea52 7a166da9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2c 5c042e087
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4c cfca8bb2c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f55583 fba8cef5b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d11 e08f55583
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb39 e08f55583
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f1 b2879fe9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376bab e09a398f1
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit b2879fe9f90def631047f533db2144858d827023
Merge: 68b9157bd a8ed770d9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 10:07:05 2021 -0400
Merge pull request #326 from NOAA-EMC/release/gfsv16.1.1
GFSv16.1.1
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc1 6bad810bc
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77afd e3fcfebc1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed39 e3fcfebc1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
udate config.base.emc.dyn
high resolution MERRA2 data used
fixed a bug related to orion
added merra2 input and update diag_table
merra2 workflow for orion
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
commit 4641c5d206a95e0e66276fa86d46ecd580213fd5
Merge: eff8a1258 e3fcfebc1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 19 14:51:19 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit e3fcfebc1ff9c9f9ceda7b775de0c34117de6459
Merge: 95e0dffea fa5d1e2ba
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 19 10:02:19 2021 -0400
Merge pull request #254 from AnningCheng-NOAA/merra2
Addition of support for MERRA2
commit fa5d1e2ba242a08e26cb7bac8c68b700a83d1d60
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue May 18 10:41:16 2021 -0400
change fv3gfs checkout head
commit 283c4a044847bbadd0cef46e14dde4de97abe986
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 17 15:56:56 2021 -0400
fixed a compilation error, NEMs/exe existing, in hera
commit 6b574160f94329754677e7f4541ab07c44185bb0
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Fri May 14 13:44:18 2021 +0000
build_fv3.sh with ATM
commit dfc8aa9a2cf5370fff38520d2a28f3960be3b583
Merge: bf5d11063 95e0dffea
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed May 12 20:11:44 2021 +0000
Merge remote-tracking branch 'upstream/develop' into merra2
commit eff8a1258aa70c061fe69697388f8914935726ee
Merge: b1ad0b963 95e0dffea
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 12 19:15:17 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit 95e0dffea435af17be9150fcd0c842763768b45f
Merge: fc727f405 dd4d18790
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 12 14:51:10 2021 -0400
Merge pull request #323 from NOAA-EMC/sync/operations_v16.0.9
Bring operations branch v16.0.9 changes into develop
commit dd4d1879093516a7950c9e0e59f6e44e462199f6
Merge: fc727f405 68b9157bd
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 10 16:40:13 2021 +0000
Merge remote-tracking branch 'origin/operations' into sync/operations_v16.0.9
* origin/operations:
bugfix for not removing last point from list in wave post pnt jobs
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
Refs: #309
commit 8def77afd4a9f1cd6cdca42c956bc7ebf675a58d
Merge: c6e2a96e8 d46e8cf49
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 10 11:45:02 2021 -0400
Merge pull request #322 from JessicaMeixner-NOAA/hpcstackww3
Updates for ww3 pre and post exec builds for hpc-stack
commit d46e8cf49aff0dbf72e457f1177e10e6f50252a6
Author: Jessica Meixner <Jessica.Meixner@noaa.gov>
Date: Mon May 10 15:31:56 2021 +0000
update for ww3_pre/post build:
-- remove ww3 specific module files
-- updated module base files to be in sync with ufs-weather-model
except that jasper is a more recent version which is needed for ww3_grib
-- added extra ww3 execs needed for this branch
-- added ww3prepost build to build_all and partial build
commit c6e2a96e86611cce00455609d9be803d580e7bc0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:30:13 2021 +0000
Change fix file linking to scan for possible subfolders in set
- instead of providing subfolder names, scan for subfolders in FIX_DIR path
and then create symlinks based on existing subfolders in set
- will not have to keep updating list of subfolders now
Refs: #164
commit aa1d1e9ca1d8521ef22e1bdb654d4a70e7b1e29e
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:27:13 2021 +0000
Change CCPP_SUITE from FV3_GFS_v16beta to FV3_GFS_v16
- newer ufs-weather-model hash supports FV3_GFS_v16 suite
Refs: #164
commit a8ed770d9c1e8614c5477d0129d6eaf5fe4e2085
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:32:36 2021 +0000
Companion update to Externals.cfg for WAFS tag update to gfs_wafs.v6.0.22
Refs: #1,#321
commit 68d9b5b5ff072b1f62131a9f7495c33c14c4a850
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:28:17 2021 +0000
WAFS tag update to gfs_wafs.v6.0.22 for bug fix
Refs: #1,#321
commit 68b9157bd59278dc07369d316999d3c8485ebf7c
Merge: 1f5af6283 97fe99096
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 5 10:50:42 2021 -0400
Merge pull request #306 from NOAA-EMC/release/gfsv16.0.0_to_ops
GFSv16.0.9
commit 1aea3ee393c99d4f76556fbbdbebc43f629558c2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:30:06 2021 +0000
Add build script and modulefiles for WW3 build
- WW3 execs no longer built by FV3 build, need separate build now
- add new build_ww3prepost.sh script for building WW3 execs in ufs-weather-model checkout
- add modulefiles for WCOSS-Dell, Hera, and Orion
Refs: #164
commit 214431a2c04f6e685e966810621fc2fae771d2f5
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:26:00 2021 +0000
Update WAFS execs to include .x
- update WAFS exec names in link_fv3gfs.sh to include ".x" extension that was added with new version
Refs: #164
commit eb1613764794a35d165e55423682ed592b2aaacb
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:22:06 2021 +0000
ufs-weather-model hash update for WW3 support with hpc-stack
- update ufs-weather-model hash to 554aedcd63e4a7c5012570406132eaf76e249ca9
- update build_fv3.sh for new compile arguments for CCPP/WW3 build
Refs: #164
commit b1ad0b96328a54112ecc13ff4b71dcc08556a8c1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 5 14:13:58 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.1
Refs: #315
commit c206e8d2606f14ee6188740f881673ff512b866b
Author: Mallory Row <mallory.row@noaa.gov>
Date: Mon May 3 19:16:42 2021 +0000
Fix typo in config.metp
There was a typo in the grid-to-obs METviewer related config variables.
The variables started with "g2g1" instead of "g2o1".
Refs: #315
commit f9013decd5af75f66eda619175bacc7549f4746a
Author: Brian Curtis <Brian.Curtis@noaa.gov>
Date: Mon May 3 14:37:13 2021 -0400
Files to test for python3 compatibility
commit 0b9607711900e0da0de3d3dc1af91cc4dc9dd04d
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 12:31:01 2021 -0400
Update v16.1 release notes with wave script fix
Refs: #301
commit fda26e9010ef59f69cd378c3092bdc82e57e4ec2
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date: Mon May 3 12:08:12 2021 -0400
Update config.base.nco.static
Change HOMEobsproc_prep and HOMEobsproc_network to point at NCO installation of these packages.
commit f9a6dd71ef7d580d6b83f50eb53814a06a944577
Merge: 173bb4814 97fe99096
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 11:55:09 2021 -0400
Merge branch 'release/gfsv16.0.0_to_ops' into release/gfsv16.1
Include wave fixes in v16.1
Refs: #301
commit 173bb4814ed2d2bc6e3436263f55c199f8dc8721
Author: catherine.thomas <catherine.thomas@noaa.gov>
Date: Mon May 3 11:52:42 2021 -0400
Update v16.1 release notes for wave fixes
Refs: #301
commit 858f216330d7ab71137afe6331f6576fec413aee
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:19:56 2021 +0000
Update EMC_post, UFS_UTILS, EMC_gfs_wafs versions in Externals.cfg
Refs: #164
commit 6ce83363726ece6dbd34719430dd44f5e63bbc3c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:14:54 2021 +0000
Component updates for UPP, WAFS, UFS_UTILS
- new tag in checkout for UFS_UTILS to use hpc/1.1.0
- new hash in checkout for UPP/EMC_post to support GTG and GTG code copy fix
- new hash in checkout for WAFS/EMC_gfs_wafs to support hpc-stack
- build script update for WAFS (cmake/stack)
- WAFS GCIP config update to fix runtime error
Refs: #164
commit 709095709ca60498d05ea0f519b494501e1ecdf2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 3 15:11:51 2021 +0000
Update util_shared to 1.3.0 on WCOSS-Dell
- version changed in production for v16.0.9 footer fix
Refs: #164
commit bf5d110632fc67653441e6830bfdcdddda906706
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 3 10:53:37 2021 -0400
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
commit 97fe990968955486fe2b7f3035c9d9423cef5e3e
Merge: c582db288 f0fd3d410
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 3 09:15:15 2021 -0400
Merge pull request #318 from JessicaMeixner-NOAA/v16/bugforpnt
Bug fix for missing buoy in wave post point
commit f0fd3d4108debaa61f000ac700fd90904f1b600b
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date: Fri Apr 30 17:56:34 2021 +0000
bugfix for not removing last point from list in wave post pnt jobs
commit fb47a5a0f7391f670461b00eaf324c3b0102ef1f
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Apr 28 17:50:15 2021 +0000
Update TC_tracker version in config.vrfy
- new TC_tracker.v1.1.15.4 was made available by Jiayi Peng
- new version supports hpc-stack on supported platforms
- installed locally on WCOSS-Dells, Hera, and Orion
Refs: #164
commit 587ac0c914430d5b887327d7c566c452d2eace62
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed Apr 28 10:36:49 2021 -0400
changes added in link_fv3gfs for fix_aer
commit 48690cd07ceeb90c6808346a04a31a6166505c86
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed Apr 28 14:00:46 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.0
commit 1d0e0c29979101b451f1…
jkhender
added a commit
to jkhender/global-workflow
that referenced
this pull request
Jun 17, 2022
Squashed commit of the following:
commit dbd9fa93ced07f39accf7ff4eec2859f0ed5d35f
Author: ChunxiZhang-NOAA <49283036+ChunxiZhang-NOAA@users.noreply.github.com>
Date: Mon May 30 21:50:56 2022 -0400
Updated SDFs and namelist settings for P8c (#795)
Updates the model version in preparation for prototype 8c, along with commensurate setting updates. Some CCPP suites are removed from the UFS build as they are no longer available.
Also updates the coupled initial conditions, and there is a simultaneous update to fixed orography files.
Refs: #736
commit 05accc1c72b1311ae9689bef5e7a1291dc12a96a
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date: Mon May 23 17:36:51 2022 -0400
Correct incorrect increment prefix variable (#805)
One instance of the increment prefix variable in `ush/forecast_postdet.sh` used `PREFIX_INC` instead of the `PREFIX_ATMINC` used elsewhere.
Fixes #804
commit ac7cb1000d5c1d31babd36f4c3e17f643f30fd4d
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun May 22 16:50:30 2022 -0400
Remove separate UPP clone (#803)
Now that UPP is cloned within UFS, there is no need to create an independent clone in global-workflow. Scripts are updated to use the UPP within UFS. In addition to removing redundancy, this will avoid version mismatch issues when UFS and global-workflow checkout different versions. The upp directory is now linked from within UFS to sorc as upp.fd (instead of the gfs_post.fd the clone was placed in). Additionally, the build script is renamed to build_upp.sh.
Fixes #770
Moots #797
commit 58728fb2c689c11335f4bf8ac371e18070c6fbd2
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri May 20 10:14:58 2022 -0400
Fix build script options (#801)
There was an issue where if build_all.sh was called with only options that are not used by partial_build.sh, partial_build.sh would see those options because $@ was not overwritten. The script have been updated to consume those options so they are no longer present if $@ isn't overwritten in the new script call.
Also fixed the getopts statement in partial_build.sh so we handle errors instead of bash (bash would report the wrong script if the script is sourced)
Fixes #800
commit fa12db279cf829b861d08c06e3e3534a335e9fd7
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed May 18 01:04:32 2022 -0400
Refactor some build scripts (#794)
Refactors the build_ufs script to allow the build of any UFS app to support future expansion of global-workflow capability. The default should be sufficient for most users, as S2SWA can be used for ATM, ATMA, S2S, and S2SW as well. The new format of the command is now:
```
build_ufs.sh [-a UFS_app][-v]
-a UFS_app:
Specify the UFS application to build. The default if none is provided is S2SWA
-v:
Turn on verbose mode (BUILD_VERBOSE)
```
build_all.sh is similarly refactored to include the same options. Also, a new `-c build_config` option is added to specify an alternative list of programs to build.
```
build_all.sh [-a UFS_app][-c build_config][-h][-v]
-a UFS_app:
Build a specific UFS app instead of the default
-c build_config:
Selectively build based on the provided config instead of the default config
-h:
Print usage message and exit
-v:
Run all scripts in verbose mode
```
partial_build.sh is also updated to take the new `-c` option to specify a build config.
```
partial_build.sh [-c config_file][-h][-v]
-c config_file:
Selectively build based on the provided config. The default if none is specified is gfs_build.cfg
-h:
Print usage message and exit
-v:
Run in verbose mode
```
In addition to the above, build_all and partial_build had their indentation redone and their usage/help statement updated/added. Also, the build configuration file was renamed to from fv3gfs_build.cfg to gfs_build.cfg.
Fixes #745
Fixes #751
commit 2abee02765a3bae48f2b4e6a900400d6731eda06
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed May 18 01:02:57 2022 -0400
Add continuous aerosols support (#693)
Adds support for continuous aerosols when running with GOCART (using the forecast aerosol tracers from the previous cycle as initial tracer fields). This adds a new task to the workflow mesh in forecast-only mode. The new task does not run in the first cycle, though it will appear in rocotostat/rocotoviewer. In subsequent cycles, the task will launch as soon as the needed restart files from the previous cycle are available and gfs_init has completed. There is currently no mechanism to have aerosol_init run for the first cycle (for instance, continuing from a previous experiment); users would have to run the scripts off-line to add aerosols to the initial conditions.
To support the introduction of the necessary python scripts, a new python environment is added to provide necessary libraries. This virtual environment is temporarily being housed in personal space, but an issue has been opened with hpc-stack to add it to the standard stack installations. The introduction of miniconda also caused the conversion of all of the rocoto entry scripts (the ones rocoto calls to run the job) to bash. Most of them had been in korne.
To make sure the needed restart files are produced, config.fcst now makes sure the forecast cadence is included in the list of restart times. This may need more testing to ensure it works properly with other restart lists. As part of this, STEP_GFS was updated to properly determine the step from gfs_cyc instead of being a set value.
Closes #366
Fixes #516
Fixes #630
commit 69b39ee5af8cfbb5cbf5cf62c92d01958b697652
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu May 12 12:18:50 2022 -0400
Add --init to GSI submodule command (#781)
Needed to obtain libsrc submodule during checkout and allows the GSI to build correctly since this GSI hash still needs the libsrc submodule during build.
Refs: #780
commit b09f92c21028ea37e4663ce4c304935a2dc45b33
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Thu May 12 08:20:16 2022 -0400
Update field_table to be consistent with UFS (#778)
Changes the fixed surface value of hydrometeor number concentrations and sub-grid TKE to 0. Also renames the field table. Both changes are consistent with changes made in UFS.
Fixes #676
commit d72a62d6c0ab2e9f53ca3e6133148f29982f9d32
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Thu May 12 08:15:23 2022 -0400
Remove special MOD_PATH from build scripts (#775)
We always use pre-installed libraries and special MOD_PATHs are no longer necessary, so these are removed from build scripts. MOD_PATH. This also moots MOD_PATHs that were hard-coded to Hera locations in some scripts. The MOD_PATH in build_ufs.sh remains as it is still needed and is a relative path into the UFS repo.
Fixes #298
commit 2adf123814a2f29e9cca54a11fbb2807b3f6cf1b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 4 12:31:20 2022 -0400
Revert g2tmpl back to 1.10.0 (#773)
Resolves bug with mismatch between hpc-ips and g2tmpl versions on the WCOSS-Dells. Also revert back to 1.10.0 on Hera and Orion to be consistent.
Refs: #772
commit b90f4e99bc42f9a8afbeaa9479e674fb75e096ea
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Tue May 3 09:45:19 2022 -0400
Remove git submodule update for upp checkout (#768)
UPP no longer has a CMakeModules submodule, so the submodule update
is removed from the checkout script.
Fixes: #767
commit ad2b14d9b1ed0fe89fe59bfb96cc03630e8457de
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Tue May 3 09:44:57 2022 -0400
Remove duplicate file linking for Thompson MP (#765)
Files for Thompson MP were being copied twice by the link script: once by checking imp_physics, then again checking the CCPP Suite. This is now reduced to one check.
Fixes: #675
commit a9fc0033b908aefb42d5b2d191c65af5cb7660c4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Apr 28 15:17:22 2022 -0400
Remove unneeded/outdated modulefiles (#762)
Remove unneeded modulefiles for WCOSS-Cray and GSI monitoring.
commit 3333dee304b6b53d3d716c60d0c87ad06d629c1c
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Thu Apr 28 14:35:57 2022 -0400
Remove prepbufr_pre-qc from archive lists (#753)
The prepbuft_pre-qc file does not need to be archived, so it no longer is.
Fixes #361
commit 88b1b1591d3201709f5f981908aaf7890d3021bd
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Apr 26 20:40:41 2022 -0400
Convert module files from Tcl to Lua (#756)
Converts all module files from Tcl format to Lua. As a side effect, this change enforces using the files as modules rather than improperly sourcing them instead of loading.
Fixes #670
commit ca80aeb86cb221263611605ba23858448bce0bad
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Apr 25 06:23:06 2022 -0400
Ensure hourly files when GLDAS is on (#740)
GLDAS requires hourly output, so make sure FHOUT is 1 when GLDAS is on.
Fixes #695
commit 9d00239088651b73a9667b70bd6247b34e35046f
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Tue Apr 19 21:22:22 2022 -0400
Update cyclone tracker to handle return code correctly #642
Updates the cyclone tracker call to correctly exit with an error code if the tracker script reports one.
Fixes #507
commit 33d3dd14d6df8109274dde4606bb7a50e4638fa2
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Tue Apr 19 21:18:56 2022 -0400
Update ww3 pre and post exe build to use cmake (#731)
Updates the WW3 pre/post build system to use cmake.
Fixes #688
commit 39facec1e03a404f84fd05b8739cd8e4010a0779
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Apr 12 11:36:30 2022 -0400
Add WCOSS2 GFSv16.2 operational def files into develop (#717)
Add WCOSS2 operational GFS def files.
Refs: #399
commit 0a85223e48a1a8dcced163791d8e7ae5a42a4fab
Author: Xianwu Xue - NOAA <48287866+XianwuXue-NOAA@users.noreply.github.com>
Date: Tue Apr 12 11:34:17 2022 -0400
Initialize "err" to avoid potential task fail (#715)
If not initialize err, and change "set -x" to "set -xue", then the waveinit task will fail with error message:
"line 234: err: unbound variable"
On branch bugfix/issue_714
Changes to be committed:
modified: scripts/exgfs_wave_init.sh
Refs: #714
commit fc6e1c3316397432d2da218b3c4fc0ea1fe70644
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Apr 5 11:07:21 2022 -0400
config.base should not exist in the repository unless it is in ops. template only exists in the repo, the experiment directory should not contain the templated config.base.emc.dyn (#707)
commit cabf437044cb937caf7a7830068fd9e413c5921f
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Wed Mar 30 21:28:50 2022 -0400
Update model and settings for Prototype P8b (#681)
Updates model and setting defaults for prototype 8b.
The UFS version is updated to a recent version of UFS (tag Prototype-P8b). As part of this, the print_esmf option is removed from the model configure file and replaced with a new setting in nems.configure. We have not made this option user-configurable at this point, but that may come in the future.
The default CCPP suites have been updated for all modes to either FV3_GFS_v17_p8 or FV3_GFS_v17_coupled_p8. This involves changing the microphysics to Thompson and changes the gravity wave drag version (knob_ugwp_version) to 0. This change breaks cycled mode for the time being. A future PR will revert the defaults to ones that allow cycled to run along with a more robust system for changing settings.
Tiled fix files are now used for all modes instead of just coupled.
Cellular automata now defaults on ON.
There are also other miscellaneous settings that have had their defaults changed.
Fixes #641, #687
commit e3f707cb9c05b45e9d4019679e406f54008279a5
Author: XuLi-NOAA <55100838+XuLi-NOAA@users.noreply.github.com>
Date: Thu Mar 24 05:43:31 2022 -0400
Modify eobs for EnKF thinning
In the Hybrid EnKF GSI, the thinning box size, dmesh, is different for the full resolution analysis and EnKF respectively. There are set in GSI scripts for the full resolution analysis, and reset in global workflow in config.eobs.
Only two thinning box sizes, dmesh(1) & dmesh(2), are defined in GSI scripts before, recently, two more, dmesh(3) & dmesh(4) are added. Accordingly, these two need to be added in config.eobs as well.
Specifically, add dmesh(3)=225.0,demsh(4)=100.0 to config.eobs.
Fixes #595
commit c32eea459af3177cee28e151b43fe5e12bdfc412
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 22 11:18:10 2022 -0400
Update ocean resolution for C48 (#651)
The ocean resolution for C48 was set as 1-deg, but the fractional
grid fix files available at C48 are for a 4-deg ocean grid. The
ocean resolution is now set to this value when FV3 is C48.
Also commented out a currently redundant block setting OCNRES in
config.ocn. The one in ecfs has to stay as it recalculates the
ocean resolution based on the EnKF resolution.
Fixes #650
commit d758e8b227fca7b5a3320adc43c29ba492c3bfe9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Mar 10 05:54:49 2022 -0500
Add single forecast GOCART support (#659)
Adds support for running single coupled free forecasts with GOCART aerosols. Support for continuous aerosol fields from cycle to cycle will be added in a future PR.
To turn on aerosols, there is a new --aerosols option for setup_expt.py. The option takes no arguments. When it is used, aerosols will be turned on by setting DO_AERO="YES" in config.base.
GOCART output files are placed in the chem directory in COM.
There is a new tarball archived, chem.tar, that contains the GOCART output.
Partially addresses #516
Fixes #403
commit a0e23e254c7c881b20d66c1c53cd36de509e6d69
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Mar 1 10:50:39 2022 -0500
Specify memory for init job (#669)
The init job has been failing on HPC using slurm due to out-of-memory errors. Now the init job specifies the amount of memory needed.
Fixes #631
commit 6874e8939211fdc07143450bfd1b6a2863172e10
Author: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
Date: Fri Feb 25 16:39:45 2022 -0500
Cleanup of utils directory (#660)
Removes all of the old, unused GSM scripts and code from the utils directory. Those codes that might still be used have been moved to a new GSM-utils repo.
Fixes #618
commit e3d64abc9c02aecb9d5d38755f6524bf9e277e66
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 24 22:49:45 2022 -0500
Fix bug with partition_batch on WCOSS (#668)
partition_batch was not being defined for WCOSS machines, but was
being used in a substitution for config.base.
Fixes #667
commit 9d75d8d78037c7a74d1a9c61a88d9d6a7e9b3be9
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Mon Feb 21 02:10:00 2022 -0500
Split output filetype variable into atm and sfc (#602)
The determination of the FV3 output filetype was a bit unwieldy as it
contained two different settings (one for the atmosphere and one for
the surface) that were not necessarily changed at the same time. They
were also being determined in a different location than other settings
based on the model resolution.
Now the old OUTPUT_FILETYPES variable has been split into two different
variables, OUTPUT_FILETYPES_ATM and OUTPUT_FILETYPES_SFC. The determi-
nation was also moved into the config.fv3 file, where other resolution-
dependent computational settings are set.
This has resulted in some functional change on WCOSS Dell, as the EnKF
was using different chunking settings and never used parallel output
for the surface likely because wasn't being run at a low enough resolu-
tion to consider it. However, there is no reason to believe the two
forecast modes should have different chunk or output settings. So, I've
used the EnKF chunking settings and the free forecast switchover point
for the surface output mode.
The new filetype settings are now also divorced from the OUTPUT_FILE
setting. However, that setting will soon be unnecessary as nemsio
is removed from the code as an option (see Issue #601).
Fixes #600
Refs #601
commit cb8b5adf16200e7b01b8236a960efce5b6d8ce5d
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Feb 17 15:55:24 2022 -0500
Correct MODE comparisons for forecast only (#658)
When the setup_expt scripts were combined, the forecast mode became a mandatory
argument. The value of this option is then directly used for the MODE variable,
but the argument name (forecast-only) does not match what was previously used
for MODE in the forecast-only script (free) and some scripts were still testing
against the old value instead of the new one. Those comparisons have now been
updated to use the new MODE name.
Fixes #657
commit f8867d3f0b1f3b5d238dced412996c56e30d31a1
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Thu Feb 10 20:23:54 2022 -0500
Add LOCALARCH option (#628)
Adds the option to archive output locally during archive jobs. This is intended for systems that do not have access to HPSS (e.g. Orion and soon S4), but can be used on any machine. To enable, the LOCALARCH setting in config.base should be set to "YES" (HPSSARCH must be "NO"). When enabled, the tarballs normally created on HPSS will instead be created in the local directory specified by $ATARDIR.
Defaults have been added to setup_expt.py to point to a local ATARDIR and LOCALARCH (currently =NO).
Fixes #624.
commit 2950c7b97f99341caa738526138022987f665627
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Feb 10 18:07:43 2022 -0500
Turn on fractional grid by default for uncoupled forecasts (#638)
Updates input.nml so that there is more consistency between the cpl and standalone atm input.nml. In particular this addresses the fact that frac_grid was only being set if cpl was true.
Fixes #571
commit 64b1c1e5ce37fba48dd717bd11356a6f57d9def4
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Feb 9 17:02:39 2022 -0500
Specify warm start as .true. or .false. (#644)
Corrects the assignment of EXP_WARM_START to either .true. or .false. depending on the value passed to setup_expt.py via `--start`.
Fixes #643
commit e537f0cecabc8e16e26b14e606558de906b19e3f
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 23:33:21 2022 -0500
Archive TC tracking logs if produced (#627)
The archive job was failing if there were no tropical cyclone files (such as when there are no cyclones). This adds a check for the TC tracking logs in case they are not produced to prevent the gfsarch job from failing on cycles when there were no TCs to track.
Fixes #625.
commit 32f93becde5ffa07c162252b95417845f2ab5159
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:59:37 2022 -0500
Fix separate threading for GFS and GDAS forecasts. (#621)
Fix separate threading options for GDAS and GFS forecasts (#610). This is performed by keeping nth_fcst_gfs separate from nth_fcst and declaring the new variable npe_node_fcst_gfs.
Fixes #610
commit 9bb09a92c55d4534feca5d521fbbd1c664730317
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Tue Feb 8 20:58:05 2022 -0500
Updated the RadMon and OznMon links. #596 (#597)
commit 97ebc4d4e6483b135468d85cd9ed974f88955914
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Thu Feb 3 02:56:34 2022 -0500
Unify `setup_expt.py` and `setup_expt_fcstonly.py` (#537)
`setup_expt.py` and `setup_expt_fcstonly.py` are unified under the former name.
The user is now required to provide a `mode` as the first positional argument to `setup.py`. Valid options are `cycled` and `forecast-only`.
```
❯ python3 setup_expt.py -h
usage: setup_expt.py [-h] {cycled,forecast-only} ...
Setup files and directories to start a GFS parallel. Create EXPDIR, copy config files. Create COMROT experiment directory structure, link
initial condition files from $ICSDIR to $COMROT
positional arguments:
{cycled,forecast-only}
cycled arguments for cycled mode
forecast-only arguments for forecast-only mode
optional arguments:
-h, --help show this help message and exit
```
Upon choosing one of these modes, options specific to the mode can be realized as follows for the `forecast-only` and `cycled` modes respectively.
```
❯ python3 setup_expt.py forecast-only -h feature/unify-setups
usage: setup_expt.py forecast-only [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--app {ATM,ATMW,S2S,S2SW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--app {ATM,ATMW,S2S,S2SW}
UFS application
```
```
❯ python3 setup_expt.py cycled -h feature/unify-setups
usage: setup_expt.py cycled [-h] [--pslot PSLOT] [--resdet RESDET] [--comrot COMROT] [--expdir EXPDIR] --idate IDATE --edate EDATE
[--icsdir ICSDIR] [--configdir CONFIGDIR] [--cdump CDUMP] [--gfs_cyc {0,1,2,4}] [--start {warm,cold}]
[--resens RESENS] [--nens NENS] [--app {ATM,ATMW}]
optional arguments:
-h, --help show this help message and exit
--pslot PSLOT parallel experiment name
--resdet RESDET resolution of the deterministic model forecast
--comrot COMROT full path to COMROT
--expdir EXPDIR full path to EXPDIR
--idate IDATE starting date of experiment, initial conditions must exist!
--edate EDATE end date experiment
--icsdir ICSDIR full path to initial condition directory
--configdir CONFIGDIR
full path to directory containing the config files
--cdump CDUMP CDUMP to start the experiment
--gfs_cyc {0,1,2,4} GFS cycles to run
--start {warm,cold} restart mode: warm or cold
--resens RESENS resolution of the ensemble model forecast
--nens NENS number of ensemble members
--app {ATM,ATMW} UFS application
```
Note, `cycled` mode presents some extra options e.g. `nens` as well as a reduced list of the UFS weather model applications.
The functionality of `--icsdir` had been broken for cycled and was hard-coded in free forecast. The functionality has now been repaired for cycled. If you provide one, $COMROT will be populated with appropriate links. If none is specified, no links will be created in $COMROT. In coupled mode free-forecast, ICs are copied *to* icsdir from the central maintained prototype location. Coupled users will now need to set this explicitly. For non-coupled forecast-only, this setting currently does nothing.
The default value for `--configdir` has been updated to the appropriate location in the workflow. Most users will no longer need to set it unless they want to point to a different config source.
The default values for `--comrot` and `--expdir` are updated from None to $HOME to facilitate offline testing of workflow creation.
There are some irrelevant sections such as `gfs_cyc` in forecast-only that is still preserved in this PR. It will be cleaned up in subsequent PR's.
Another unnecessary complication is the argument of `--start`. The logic presented here would ideally be selected at runtime based on the type of IC's populated in comrot. It is left unchanged.
commit d7319f19aceca6ae6d7ce9b06c6eb731832d1de1
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:19:43 2022 -0500
Stop archiving gfsarch.log as it is being written (#581)
The gfs archive job was failing because it was attempting to archive its own log file into gfsa.tar while it was being written. To exclude that file pattern, bash extended globbing is turned on, which allows the use of a negating group.
Fixes: #558
commit 1b300dbf98eccdf03117b3795a2d8da3310a6126
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Feb 2 11:18:55 2022 -0500
Fix build on non-WCOSS2 machines (#612)
The UFS_UTILS and GLDAS versions are updated to correct build problems on development machines. Each had been using a beta version of ESMF that was removed from the hpc-stack installation without warning. Additionally, GLDAS had introduced bugs into their build scripts during the WCOSS2 port. These issues are now all corrected in the new versions.
Also updates the UFS_UTILS repository to its new location under UFS instead of EMC.
Fixes #476, #561
commit d3028b9d8268028226f9c27800fcd6655e9e4bb8
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Wed Jan 19 14:29:51 2022 -0500
Fix setting of OUTPUT_FILETYPES (#589)
The setting of OUTPUT_FILETYPES was being overwritten by the FV3 model configure parsing script, so the settings determined in the config.fcst file was being ignored. Now that block is removed and config.fcst is updated to make sure it is set for any machine.
Fixes #588
commit 13421b01a07e5d1cca32ee7579a4094d8209b072
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:16:29 2022 -0500
Update PR template
commit 322a61a61238e8486cb42d7d26282b2728d0c32f
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 12:13:33 2022 -0500
Move PR template MD file. Update issue templates
commit 7a52fc8d8bbfc5896b7d03004d5189b2a6b24013
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 11:32:51 2022 -0500
rename pull_request_template.md
commit 88ec66eb834e9a78c94feae4f37f774c7807aa3c
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Wed Jan 19 10:34:54 2022 -0500
make changes to the templates
commit 66d84e21ad7ae3fafb4ad5097faf86dfa1b99b60
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Jan 19 10:08:45 2022 -0500
Fix lfrac entry in diag table (#570)
Land fraction was listed in the wrong module, keeping it from being
written to output.
Refs: #562
commit e2657adbdadaac7089591390428324c6aec260a9
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 17:04:04 2022 -0500
Update NCO_bug_report.md
commit a9d6851a0c3b6051cb1c7c7ec482fc50d762bef4
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 16:59:18 2022 -0500
Update bug report issue template
commit 2fab8b4213645b79b3fea8127e7d4ab21044188e
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Jan 18 15:13:53 2022 -0500
Add templates for Github (#560)
Adds GitHub templates for new issues and PRs to standardize and make sure all the needed information is included.
commit 03be05309b184421c473f1b43082b766b114fd46
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:02:02 2022 -0500
Fix toggle for building workflow_utils (#580)
The fv3gfs_build.cfg did not have a space between the periods and
the setting for workflow_utils, which means the setting was ignored
and the default of yes was always used.
Fixes: #577
commit aadd3bae3d4fdc7827a93ab51b336a7f6b2fdb02
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Jan 18 10:01:24 2022 -0500
Remove redundant toggle for gldas build (#579)
The build cfg files controlling which components are built and the
partial_build.sh script all have two instances trying to set the
value for gldas. This means one of the settings did nothing when
changed.
Fixes: #578
commit 86d4b305a070c080dcfd44a3f9a31ca2280759fa
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Jan 14 01:05:59 2022 -0500
Update config missed in last GSI update (#569)
When the GSI version was updated in PR #530, updates to the config.anal file were mistakenly omitted. That file is now updated following ops (PR #451, #489).
Refs: PR #530
commit 33308ea3b477db17a5db455a4c4887e3d5cbc711
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date: Thu Jan 6 00:44:43 2022 -0500
Updates for P8a (#538)
Updates ufs-weather-model to the 2021 Dec 23 commit and the matching UPP hash. Coupled settings are updated to run the P8a mini prototype.
Updates include:
Turn on ice-albedo feedback in atm (Requires changing input.nml to set use_cice_alb=true in &gfs_physics_nml )
Updates to CA namelists
Updates for NOAH-MP which require input.nml update for to export iopt_sfc="3" and modifying parm_fv3diag to include pahi, pah_ave, ecan_acc, etran_acc,edir_acc,wa_acc, lfrac to the grib outputs "gfs_phys", "pahi", "pahi", "fv3_history2d", "all", .false., "none", 2
Closes #525
commit ae7092405e7552f76674b33fc81cb3973a68ad4e
Author: David Huber <69919478+DavidHuber-NOAA@users.noreply.github.com>
Date: Mon Jan 3 17:28:47 2022 -0500
Reordered CDUMP_LIST Refs #541 (#542)
commit 033b1d8ef29b7c829e8131758135b372ae61de26
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Sun Dec 19 22:18:48 2021 -0500
Update GSI version to 2021 Dec 14 (#530)
commit b187e2aa15bfd7600c49627fd4c2d02915b50abe
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Thu Dec 16 22:15:45 2021 -0500
Replace all backticks for command substitution (#526)
All instances where backticks are used for command substitution are
replaced with $( ). This standardizes usage around $( ), which can
be nested and does not be confused with single quotation marks.
Refs: #397
commit dd03ed0953bfc65f5a9c85529dd2c95ac0625189
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Fri Dec 10 15:35:00 2021 -0500
Add coupled support and update UFS (#500)
Adds support for full coupled model except aerosols (FV3-WW3-MOM6-CICE) following the prototype settings. Support for aerosols will be added soon.
This also updates the UFS version to develop as of Oct 7. There are associated additions or changes to settings, but we've tried to have defaults maintain the same behavior as previously.
Issues related to memory in prep and ocnpost on Hera and Orion due to changes in the slurm configuration have been addressed.
Due to a change in the dycore that uses the checksum in the NetCDF files to check for data integrity, warm start ICs may need an additional offline step before use to update the checksum:
```
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_core.res.tile1.nc ./fv_core.res.tile1.nc
ncatted -a checksum,,d,, ${RESTARTinp}/${PDY}.${cyc}0000.fv_tracer.res.tile1.nc ./fv_tracer.res.tile1.nc
```
A new setting APP controls what components (and their respective jobs) are turned on. The setting can be found in config.base, but can be set at experiment setup time using the new --app option. Recognized values are ATM (atm-only), ATMW (atm and waves), S2S (atm-ocn-ice), S2SW (atm-ocn-ice-wav). If no value is given, the default is ATM, so there is no change in behavior if you omit the option. For now, these values follow their UFS equivalents, but they may diverge in the future based on the needs of global workflow. ATMW is known to not quite work; S2S is so far untested.
When run using the S2SW app, the workflow will automatically substitute the coupled IC copying job in place of the normal gfsprep jobs and use roughly the settings from prototype 7.2 (except aerosols). The alternate settings for the coupled configuration (compared to ATM) are taken from the config.defaults.s2sw file.
Coupled prototype ICs are currently being maintained on Hera, Orion, and WCOSS-Dell. The locations are set in the config.coupled_ic. There is a base location (BASE_CPLIC) and a setting for each component specifying a subdirectory within the base location.
There are new options available for the checkout.sh, build_all, and link_fv3 scripts:
- checkout.sh has a new -m option that allows you to override the UFS hash that is checked out.
- build_all.sh has two new options: -c to build UFS as the coupled model, and -a to build UFS as ATM-GOCART (but aerosols are not fully supported yet). These options are then passed to build_ufs.sh. The options are temporary, as all configurations will be available from a single executable soon. When building for coupled, the subcomponents built is controlled by cpl_build.cfg.
- link_fv3.sh is renamed to link_workflow.sh and adds an optional third argument, "coupled". When provided, the files necessary for coupled are linked. This option is also temporary, as the link script will be updated to always link these files.
### To run in coupled mode with prototype settings/inputs
1. Clone as usual
2. Run checkout.sh
3. Run build_all.sh with the -c option `./build_all.sh -c` (the -c option is temporary)
4. Run link using the coupled argument: `./link_workflow.sh emc <machine> coupled`
5. Run setup_expt_fcstonly.py using the --app option S2SW
6. Modify config files as necessary. config.defaults.s2sw will automatically override some settings when app is S2SW
7. Run setup_workflow_fcstonly.py as usual
8. Setup rocoto to run your experiment
### Technical udpates
Converts global forecast into a set of modular scripts. The scripts define a bunch of functions to be called, with separate functions for each component in each classification. For instance, there is an FV3_GFS_predet, MOM6_predet, CICE_predet, etc. that are conditionally run if the associated component is on.
The diag table for AOD 550 (diag_table_aod) is reduced to just the portion needed in addition to the normal diag table so it can be appended. Ideally, in the future, we extend this treatment so diag tables can be built based on settings instead of having separate ones for each combination.
Wave input file templates that were formerly kept in the fix directory are now more appropriately moved inside the global-workflow in parm.
The group labels for the post jobs now indicates the forecast hours included instead of just an index. This required minor updates to check for 'anl' instead of 0 for analysis jobs.
The checkout script now writes its logs to the logs/ directory the same way as build does, instead of leaving them in sorc/
The UFS model source has been moved to a ufs_model.fd directory, and the build script has been renamed build_ufs.sh.
Error checking was added to the build_ww3prepost.sh script.
The archive script has been streamlined and the section that saves gaussian grid files was fixed, but turned off by default (see PR #517).
rocoto_viewer has been updated to python3 and the dependency on prod_utils was removed, which makes the script more portable. Be sure to load a sufficient version of python to use.
For those coming from coupled-crow: ice and ocean output files are now linked to COM from the forecast run directory instead of being copied at the end of the forecast. This allows post to run as files are produced instead of after the forecast is complete. Ocean post jobs are handled the same as atmosphere post: forecast hours are grouped into a number of tasks determined by NPOSTGRP in config.ocnpost. The ocean and ice output are now also located in their own component directories in COM (the joint ocean-ice files are located in the ocean directory for now). The atmosphere latitudes are reversed from coupled-crow (see c59260b0).
Co-authored-by: jikuang <jikuang@umd.edu>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
commit 8abe1dfa8d613f9398cd86564046b53235f62749
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Dec 8 16:36:52 2021 -0500
Fix resource assignment issue found in analysis job running global_cycle (#467)
Correct settings for nth_anal on WCOSS-Dell and nth_cycle everywhere.
commit fdffeaaf013f638ac43ad421981e48fabf7a7070
Author: malloryprow <mallory.row@noaa.gov>
Date: Thu Nov 18 14:17:02 2021 -0500
Update gfsmetp, gfsarch dependencies (related update of EMC_verif-global tag) (#508)
* Update gfsmetp and gfsarch dependencies
* Update EMC_verif-global tag to verif_global_v2.8.0
Refs: #437, #472
commit 108abc589b746b2ba585d18a6b6587e5a0d89f39
Merge: f6f1bb702 e5cd63693
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Tue Nov 16 10:11:39 2021 -0500
Merge pull request #497 from NOAA-EMC/feature/shebang
Update ush/ script files with "python3" in shebang
commit e5cd636930b0e36ae9b2b25697cda317a2df996d
Author: jikuang <jikuang@umd.edu>
Date: Fri Nov 12 11:50:53 2021 -0600
update the following files with "python3" in shebang
commit f6f1bb7026bcb4983b0f9e921a6332b6722fe724
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Wed Nov 10 10:08:42 2021 -0500
Add flag to launcher command to prepend task number to lines in stdout/err (#493)
Modified env file settings for launcher variable to prepend task number label with "-l" flag.
commit 096fc1fb76ee01aff7908b91adc9851da9235cad
Author: Rahul Mahajan <aerorahul@users.noreply.github.com>
Date: Tue Nov 9 08:47:22 2021 -0500
Update NSSTBUFR file logic in prep job (#469)
Add switch in config.prep to toggle NSSTBUFR file creation in prep.sh. Add logic in prep.sh to copy NSSTBUFR from DMPDIR if not creating as part of the workflow. NSSTBUFR is created with different DTYPS_nsst before 2020102200.
commit 84194a735b46c907656fe2b2cca3ca97799396f0
Merge: a39cb11ef 0740b5b6c
Author: Walter Kolczynski - NOAA <Walter.Kolczynski@noaa.gov>
Date: Wed Oct 27 11:52:55 2021 -0400
Merge pull request #474 from NOAA-EMC/feature/setx2
Hide module load commands
commit 0740b5b6c622d64b770c73aa47d9789494d94a99
Author: jikuang <jikuang@umd.edu>
Date: Tue Oct 26 13:19:07 2021 -0500
wrap module load commands with set +x
commit a39cb11ef9e72b2913d81521d6f9e51da3a8bc22
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Sep 29 09:36:31 2021 -0400
Update EMC_verif-global tag to verif_global_v2.5.2 (#450)
New tag provides the following updates since the verif_global_v2.2.1 tag:
- Added capability to produce a scorecard (no need to use METviewer AWS to produce scorecards)
- Added capability to produce fit-to-obs plots
- Added support for Jet
- Updated DA ensemble plots graphics to support when models ensemble mean and spread output is on different grids
- Hot fix for new METviewer AWS host name
- Hot fix for reorganizing precipitation verification input files
Refs: #438
commit 6f74cacdffe22f67e99aed1ac0e75720dac27c30
Author: JianKuang-UMD <51758200+JianKuang-UMD@users.noreply.github.com>
Date: Tue Sep 28 09:53:16 2021 -0400
Remove firstcyc job (#440)
The need for the firstcyc job has gone away, removing redundant job.
commit 1ca27148d776eedf96636a845feb95881cfaa138
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Sep 9 11:53:11 2021 -0400
Update repository name for EMC_post component to UPP (#441)
- the "EMC_post" repository was renamed to "UPP" on September 6th 2021
- update repository url in checkout script and Externals.cfg
Refs: #433
commit 7233d0c46cc9d24b01bee0ef6be12d775d2523a4
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon Aug 23 11:22:26 2021 -0400
Add rstprod support to Orion (#421)
- Update EMC_verif-global tag to verif_global_v2.2.1
- Turn on rstprod support by default on Orion
- Change default DMPDIR path on Orion to new rstprod-supported GDA
Refs: #347
commit 20c331dd9678834b980ccc932b6235a8266d4a88
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Aug 19 13:01:07 2021 -0400
Update obsproc package versions for TAC2BUFR implementation (#423)
Update obsproc package versions for TAC2BUFR implementation:
- obsproc_prep v5.5.0
- obsproc_global v3.4.2
- new packages installed on WCOSS-Dell, Hera, Jet, Orion
Refs: #341
commit 7f0f7400520b031e2428238a9741d4d8bfb8207a
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Aug 18 12:41:09 2021 -0400
Update vrfy/metp jobs to use jobid in their DATAROOT folders (#414)
Update vrfy/metp jobs to use jobid in their respective DATAROOT folder names; fixes race condition between vrfy and metp jobs
Refs: #401
commit 9233d965cd19a94ee649b4ee8c117bb587b78923
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 12:48:12 2021 -0400
Update workflow_utils build modules and remove ncio module hack (#412)
Add ncio/1.0.0 module load to workflow_utils and remove hack that builds this library inline.
Refs: #407
commit df26e953792913669698ba64b414b3be5184f43d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Aug 17 11:15:38 2021 -0400
UFS_UTILS tag update - gdas_init support on Jet and HPSS path update for GFSv16 real-time parallel (#410)
* Update UFS_UTILS tag to ufs_utils_1_6_0
* Update HPSS path for real-time GFSv16 pre-implementation parallels
Refs: #400
commit 34427f560c729ee3b7cc91ff357b3ad908a7486a
Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com>
Date: Mon Aug 9 15:47:27 2021 -0400
Free-forecast mode support on Jet (#394)
Support for free-forecast mode on Jet is added. Setup support for multiple partitions included (xjet, kjet, sjet, vjet) but tested/recommend to use xjet (default). Verification pieces and cycled mode not yet supported.
commit 8c777ad04bce0555bed9f6666b808515b0a3766d
Merge: ce66c74bb fc48af56d
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Tue Jul 20 15:53:45 2021 -0400
Merge pull request #370 from BrianCurtis-NOAA/feature/rocoto-py3
Convert setup scripts to python3
commit fc48af56d3a0ccbd3e142d22452b9b5e34173b7b
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 20:48:05 2021 +0000
Missed a set of raw_input(), in py3 they are just input()
commit 44dc907a2ea3b8a29334b2416183ca8775ff4c82
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:59:54 2021 +0000
revert rocoto_viewer as its being worked on elsewhere
commit 37f25384c29f6697be5c851868ce98d8b6c31207
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 19:27:32 2021 +0000
Fixes from testing
commit c0716f41f2446fec9a441b285d9033f73345c5d4
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 10:28:06 2021 -0400
Merge w/upstream and update those changes to py3
commit cf8758f84418c236fb45913912491a1c27b2829f
Merge: f9013decd ce66c74bb
Author: Brian Curtis <brian.curtis@noaa.gov>
Date: Mon Jul 19 09:21:25 2021 -0400
fix merge conflict in workflow_fcstonly
commit ce66c74bbc43e997bae66a2c2035f2412d3f602b
Merge: 96347ea52 7a166da9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jul 14 16:18:55 2021 -0400
Merge pull request #362 from KateFriedman-NOAA/bugfix/ffhighres
Correct wrong settings for high-res warm-start free-forecast
commit 7a166da9f20a59729be39fff953bfe367987f046
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:19:45 2021 +0000
Reduce C768 npe_wav_gfs from ops 440 to dev 140
Refs: #353
commit b34c581c3b19ecdcdb4eff463e855597e5c08d80
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jul 14 19:15:31 2021 +0000
Adjust how EXP_WARM_START is set from setup_expt_fcstonly.py step
- remove default value for start (EXP_WARM_START)
- if user provides start flag then use it for EXP_WARM_START
- if user doesn't provide start flag then make a decision for them based on resolution
- if start=None and res=768 then start=warm
- if start=None and res!=768 then start=cold
Refs: #353
commit 69cf53412a61e7fe0fb49e8c688bc2cbb4ded572
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Thu Jun 24 16:38:25 2021 +0000
Set EXP_WARM_START=true in config.base via setup_expt_fcsonly.py if resolution is C768
- have free-forecast setup_expt script check if resolution is operational resolution (C768)
and if so, set EXP_WARM_START=.true.
- forcing EXP_WARM_START=.true. when C768 covers most C768 scenarios regarding cold vs warm starting
- the --start argument still works but new check will override if res=768
- users can still change config.base setting as needed for special scenarios
Refs: #353
commit 08f62e45319c9772ef33cdb3c7aa3ec165fede09
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 21:21:51 2021 +0000
Revert EXP_WARM_START if-block addition in config.getic
- need to determine better way to set EXP_WARM_START
Refs: #353
commit 1c03067ca570295b65f967467ef2329fb7999578
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:33:18 2021 +0000
Revert config.base EXP_WARM_START check change
Refs: #353
commit 0f1cea6662695cad9ecf7df8317a36e1ab5c57e1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:12:27 2021 +0000
Add checks for EXP_WARM_START in config.base and config.getic
- add OPS_RES variable to both config.base.emc.dyn and config.getic
- add if-block in both configs to force EXP_WARM_START=true if CASE=OPS_RES and gfs_ver=v16 (current ops)
- check in config.base helps with later IAU checks
- help catch when user doesn't set EXP_WARM_START=true when running v16 C768
Refs: #353
commit 7ed96c34f3dd6e4c4251e87d9abf62a0dbb413a2
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:10:17 2021 +0000
Add cd to ROTDIR when pulling ops warm starts
- pull v16 warm starts directly into ROTDIR; don't need temporary location to handle subfolder diffs
- resolves issue with GDATE gdas restart files being left in EXTRACT_DIR
Refs: #353
commit 06c5e3cb7bd9d82d4e51a63168465118a34e5882
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 23 19:06:42 2021 +0000
Reduce C768 resource settings to fit node limits
- default C768 resources on Hera were 218 nodes which is higher than the 210 node limit per job
- bring C768 settings in config.fv3 down to 148 nodes (on Hera)
- tested new settings in free-forecast mode on Hera
Refs: #353
commit 96347ea527f7b0ab61a1aae6576e2709fb387c7c
Merge: cfca8bb2c 5c042e087
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 23 11:13:06 2021 -0400
Merge pull request #316 from NOAA-EMC/feature/hpc-stack
GFS components update for hpc-stack support
commit 5c042e087c02cb82fe24ce666e477791f5e2417e
Merge: b36414e4c cfca8bb2c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 19:33:03 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
commit cfca8bb2ca0dc0105b905c536f346002408db771
Merge: e08f55583 fba8cef5b
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Thu Jun 17 14:40:18 2021 -0400
Merge pull request #342 from KateFriedman-NOAA/issue178
Free-forecast integration with chgres_cube and resolve know mode bugs
commit fba8cef5b870d46df1c665d3e9cabb23904ad3cf
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:57:14 2021 +0000
Remove wave restart pull in getic script
Refs: #178
commit 921838feb9f6fd3fc3c69579c677ffdd7175a103
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed Jun 16 13:18:35 2021 +0000
Remove old compile command from build_fv3.sh
Refs: #178
commit b36414e4ce49579c5db1829fab46e1a4ef302569
Merge: 9cf615d11 e08f55583
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 15 18:36:55 2021 +0000
Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
Refs: #164
commit 65ff48e049a651e74be8be121163c20957bf1c44
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:37:24 2021 +0000
Add v16 pgb anl pull to getic script
Refs: #178
commit 37e7c2e0806678c93a11bae682f48da172940fd6
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:59 2021 +0000
Add OPS_RES variable to init script
Refs: #178
commit db18627960d2def7bbfee30994f4be6586babe1c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 18:36:10 2021 +0000
Increase init job walltime to 30 mins from 15 mins
Refs: #178
commit 30aefb11dd8130f1d4a1e6eb951e1fa400fdc361
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 10 15:43:27 2021 +0000
Update/fix pull of v14/v15 pgrb2 anl files in getic job
Refs: #178
commit 18970c716d79922fa02b86165996bb47fb42d3fa
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 9 12:04:01 2021 -0500
Disconnect archive job in workflow from HPSS access check
- remove dependency on HPSS access to check for adding gdas[gfs]arch job to workflow
- add HPSSARCH variable to ARCHIVE_TO_HPSS definition in cycled workflow, similar to prior addition to free-forecast script
Refs: #178
commit b52d2f0b82e0e376905c64daa593362396f8da1b
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:06:30 2021 -0500
Update UFS_UTILS checkout to ufs_utils_1_4_0 tag
- new ufs_utils_1_4_0 tag includes updates to support this branch
- From tag release notes:
- Update the GDAS initialization utility to ingest GFS v16 data.
- Update to process either the GFS or GDAS CDUMPs.
Refs: #178
commit 4c858c0f059abd0ff4c937c7bab692d7b13a8163
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Tue Jun 8 13:05:08 2021 -0500
Adjust comments in getic job script
Refs: #178
commit 898a43fb74005e969ecb5baf28ecf2d51f7c5dda
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:57:32 2021 +0000
Adjust getic/init job scripts
- adjust EXTRACT_DIR, DATA, and ROTDIR usage in getic and init jobs
- remove duplicate pgb file pull from init job
Refs: #178
commit 1cdc2a44c6d29cfb8f06a50238ea29d28642c1f1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 8 15:56:46 2021 +0000
Add cmake module load to Hera block in machine-setup.sh
Refs: #178
commit fe448ff29aedca6a40a748ee47ae001b1639188c
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 19:32:15 2021 +0000
Set DO_WAVE to NO
- turning off waves by default in config.base
Refs: #178
commit bfb0a33305a46d87f62c4a5c8bd7799a60362678
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:13:08 2021 -0500
Remove RUN_CCPP option, force CCPP now
- remove RUN_CCPP case option from build_all.sh
- remove RUN_CCPP option in build_fv3.sh, force CCPP build now
- remove pre-CCPP GFS ops tag checkout option in checkout.sh, forcing CCPP hash checkout now
Refs: #178
commit 771782f109de15f9f0214bcceb852b51bb4b0e02
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu Jun 3 13:09:42 2021 -0500
Replace Orion checks with hpssarch checks for getic job
- add hpssarch variable to setup_workflow_fcstonly.py
- replace Orion checks with hpssarch=YES checks
Refs: #178
commit e2ac5872ca482eb335bc6294e00594dc3a806718
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:23:35 2021 +0000
Update WCOSS-Dell section of machine-setup.sh
- needed cmake module loaded for building
- added cmake module load and prereq stack loads
Refs: #178
commit f0afb91bae738413539ee2f1fdc63b79e93b3e52
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 14:22:43 2021 +0000
Change BDATE to GDATE in getic.sh
Refs: #178
commit 69ac287062512b929a5193ebc86e4c7fcbbb1917
Merge: e62cefb39 e08f55583
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed Jun 2 10:17:52 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit e62cefb3943a87a90fd40234f08845534df818a1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:50:28 2021 +0000
Correct gdas operational tarball name in getic job script
Refs: #178
commit 127723adfde2b7b7c79bd4d346cafcb1f265dc1c
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 16:44:37 2021 +0000
getic job updates to add OPS_RES variable and pull from operational tarballs for warm starting
- add OPS_RES variable to define current operational resolution; use variable where needed now
- updated getic job script to use OPS_RES variable in if-block check
- updated getic job script with new operational tarballs to pull for warm starting high res runs
Refs: #178
commit 499f217f92b5bb0fad9e71de221937d9973046ce
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue Jun 1 15:49:41 2021 +0000
Resolve bug in wavepostpnt jobs when DOBLL_WAV=NO
- change DOBNDPNT_WAV=YES and CFP_MP=YES if-block to only prepare cmdtarfile for CFP
when DOBLL_WAV=YES to avoid scenario where only a single command is added to cmdtarfile
Refs: #178
commit e08f5558372d43d88890ca639e70ab923071361b
Merge: e09a398f1 b2879fe9f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 26 12:27:40 2021 -0400
Merge pull request #327 from NOAA-EMC/operations
Operations updates for GFSv16.1.1
commit 824ff7254fba04a0b3726316d300f9fa6282c937
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:42:25 2021 +0000
Change UFS_UTILS version to feature branch for testing
Refs: #178
commit 151e0b56b6e38f40449c9eb0807ffa92b6aa46f9
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Tue May 25 20:41:32 2021 +0000
Correct if-statement syntax in config.init
Refs: #178
commit 005d33d7b100b279e0db5290824c3e7acabfa4ba
Merge: 5ec376bab e09a398f1
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 15:23:05 2021 -0400
Merge branch 'NOAA-EMC:develop' into issue178
commit b2879fe9f90def631047f533db2144858d827023
Merge: 68b9157bd a8ed770d9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 24 10:07:05 2021 -0400
Merge pull request #326 from NOAA-EMC/release/gfsv16.1.1
GFSv16.1.1
commit e09a398f1cedc7252219e75bf0b319d2601bc8df
Merge: e3fcfebc1 6bad810bc
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Fri May 21 09:58:49 2021 -0400
Merge pull request #317 from malloryprow/feature/EMC_verif-global_upgrade
EMC_verif-global v2.0.0 major release updates
commit 6bad810bccdfc893fd51b8b55c60c1f732547c3a
Author: Mallory Row <mallory.row@noaa.gov>
Date: Fri May 21 13:55:13 2021 +0000
Update Externals.cfg EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit 9cf615d11b096ea4843f4e5938a6a65f3500df49
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 20 20:10:18 2021 +0000
Modulefile updates for testing with waves on
- updated ww3 and base modulefiles to add modules and update some
- added new: pio/2.5.2i, fms/2020.04.03
- updated esmf module to esmf/8_1_1 and nceppost/dceca26 to upp/10.0.6
Refs: #164
commit b155ff37040658703168268d4e58fe4e6b45a50d
Author: Mallory Row <mallory.row@noaa.gov>
Date: Thu May 20 15:00:04 2021 +0000
Update EMC_verif-global tag to verif_global_v2.0.2
Refs: #315
commit cae62e3f47e245e70fcf3721fb4c022ea11c059f
Merge: 8def77afd e3fcfebc1
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 19 19:45:05 2021 +0000
Sync merge with develop and WW3 build updates
- Merge remote-tracking branch 'origin/develop' into feature/hpc-stack
- WW3 build updates: revert back to separate module files for build;
address modulefile reorganization in separate issue
- remove CCPP option with system build, doing CCPP by default now
Refs: #164
commit 5ec376bababd935e4f3b15c4754105f5bd750657
Merge: 6b6b9ed39 e3fcfebc1
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Wed May 19 18:24:31 2021 +0000
Merge remote-tracking branch 'origin/develop' into issue178
* origin/develop:
change fv3gfs checkout head
fixed a compilation error, NEMs/exe existing, in hera
build_fv3.sh with ATM
fixed line 43 of link_fv3gfs.sh, build_fv3.sh v15 to v16
bugfix for not removing last point from list in wave post pnt jobs
changes added in link_fv3gfs for fix_aer
changed fix dir for link_fv3gfs
changes on build_fv3.sh and symlinks to optical data files instead of cp
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
updated config.fcst
testing merra2 workflow in hera
update merra2 before a new pull request
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
udate config.base.emc.dyn
high resolution MERRA2 data used
fixed a bug related to orion
added merra2 input and update diag_table
merra2 workflow for orion
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
commit 4641c5d206a95e0e66276fa86d46ecd580213fd5
Merge: eff8a1258 e3fcfebc1
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 19 14:51:19 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit e3fcfebc1ff9c9f9ceda7b775de0c34117de6459
Merge: 95e0dffea fa5d1e2ba
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 19 10:02:19 2021 -0400
Merge pull request #254 from AnningCheng-NOAA/merra2
Addition of support for MERRA2
commit fa5d1e2ba242a08e26cb7bac8c68b700a83d1d60
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Tue May 18 10:41:16 2021 -0400
change fv3gfs checkout head
commit 283c4a044847bbadd0cef46e14dde4de97abe986
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Mon May 17 15:56:56 2021 -0400
fixed a compilation error, NEMs/exe existing, in hera
commit 6b574160f94329754677e7f4541ab07c44185bb0
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Fri May 14 13:44:18 2021 +0000
build_fv3.sh with ATM
commit dfc8aa9a2cf5370fff38520d2a28f3960be3b583
Merge: bf5d11063 95e0dffea
Author: anning.cheng <anning.cheng@noaa.gov>
Date: Wed May 12 20:11:44 2021 +0000
Merge remote-tracking branch 'upstream/develop' into merra2
commit eff8a1258aa70c061fe69697388f8914935726ee
Merge: b1ad0b963 95e0dffea
Author: Mallory Row <mallory.row@noaa.gov>
Date: Wed May 12 19:15:17 2021 +0000
Merge branch 'develop' into feature/EMC_verif-global_upgrade
commit 95e0dffea435af17be9150fcd0c842763768b45f
Merge: fc727f405 dd4d18790
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 12 14:51:10 2021 -0400
Merge pull request #323 from NOAA-EMC/sync/operations_v16.0.9
Bring operations branch v16.0.9 changes into develop
commit dd4d1879093516a7950c9e0e59f6e44e462199f6
Merge: fc727f405 68b9157bd
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Mon May 10 16:40:13 2021 +0000
Merge remote-tracking branch 'origin/operations' into sync/operations_v16.0.9
* origin/operations:
bugfix for not removing last point from list in wave post pnt jobs
Update util_shared module version to 1.3.0 for wave footer fix
Revert addition of ecflow trigger for wavepostbndpntbll job
update ufs-weather-model tag to GFS.v16.0.16
add ecflow updates for new wave bndpntbll job
Additional WAFS tag update to gfs_wafs.v6.0.21 for GFSv16.0.8
Back out updates to add config.resources.nco.static
WAFS tag update to gfs_wafs.v6.0.20 in Externals.cfg
WAFS tag update (gfs_wafs.v6.0.20) for v16 post-implementation fixes
fix for missing wave boundary cbull and bull files
Fix cycle date in bull and cbull wave files
Reverting transfer parm file changes committed at 39bab45
Component tag updates for nwprod/gfsv16.0.7
Updated transfer parm files for gdas, enkf, and gfs dissemination
Issue #215 - GFSv15.3.5 ops updates for gempak and bufrlib versions
Clean up commments
Updated sorc/checkout.sh to pick gfsda.v15.3.3 ( EUM bufr changes )
Refs: #309
commit 8def77afd4a9f1cd6cdca42c956bc7ebf675a58d
Merge: c6e2a96e8 d46e8cf49
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Mon May 10 11:45:02 2021 -0400
Merge pull request #322 from JessicaMeixner-NOAA/hpcstackww3
Updates for ww3 pre and post exec builds for hpc-stack
commit d46e8cf49aff0dbf72e457f1177e10e6f50252a6
Author: Jessica Meixner <Jessica.Meixner@noaa.gov>
Date: Mon May 10 15:31:56 2021 +0000
update for ww3_pre/post build:
-- remove ww3 specific module files
-- updated module base files to be in sync with ufs-weather-model
except that jasper is a more recent version which is needed for ww3_grib
-- added extra ww3 execs needed for this branch
-- added ww3prepost build to build_all and partial build
commit c6e2a96e86611cce00455609d9be803d580e7bc0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:30:13 2021 +0000
Change fix file linking to scan for possible subfolders in set
- instead of providing subfolder names, scan for subfolders in FIX_DIR path
and then create symlinks based on existing subfolders in set
- will not have to keep updating list of subfolders now
Refs: #164
commit aa1d1e9ca1d8521ef22e1bdb654d4a70e7b1e29e
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date: Mon May 10 14:27:13 2021 +0000
Change CCPP_SUITE from FV3_GFS_v16beta to FV3_GFS_v16
- newer ufs-weather-model hash supports FV3_GFS_v16 suite
Refs: #164
commit a8ed770d9c1e8614c5477d0129d6eaf5fe4e2085
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:32:36 2021 +0000
Companion update to Externals.cfg for WAFS tag update to gfs_wafs.v6.0.22
Refs: #1,#321
commit 68d9b5b5ff072b1f62131a9f7495c33c14c4a850
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Thu May 6 19:28:17 2021 +0000
WAFS tag update to gfs_wafs.v6.0.22 for bug fix
Refs: #1,#321
commit 68b9157bd59278dc07369d316999d3c8485ebf7c
Merge: 1f5af6283 97fe99096
Author: Kate Friedman <kate.friedman@noaa.gov>
Date: Wed May 5 10:50:42 2021 -0400
Merge pull request #306 from NOAA-EMC/release/gfsv16.0.0_to_ops
GFSv16.0.9
commit 1aea3ee393c99d4f76556fbbdbebc43f629558c2
Author: kate.friedman <kate.friedman@noaa.gov>
Date: Wed May 5 14:30:06 2021 +0000
Add build script and modulefiles for WW3 build
- WW3 execs no longer built by FV3 build, need separate build now
- add new build_ww…
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EMC_verif-global's next major release version 2.0.0 needs to be used within the global workflow. This includes an upgrade to using MET version 9.1.3 and METplus version 3.1.1, as well as all the python scripts updated to using python3.
I tested on WCOSS Dell, Hera, and Orion (very low res single cycle), and the gfsmetp tasks all ran successfully.