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v24.07 monthly release

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@aanil aanil released this 11 Jul 09:12
v24.07
c29575c
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GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
  • Python on NGI env to 3.11
  • Sarek to 3.4.2
    • aswcli to 2.15.57
    • vep-108.2
    • snpeff-5.1
    • Add GRCm39 and WBcel235
    • Increase FASTQC mem in config
  • RNAseq to 3.8.1
  • Updates to Arteria Seq Report
  • Validation plugin at 1.1.2 for nfcore demultiplex and sarek
  • Nextflow to 24.04.01
  • Add nf-prov at 1.2.1
  • Add nf-tower at 1.6.3
  • Download nextflow plugins
  • Update nf-core commands
  • Update ngi_pipeline for latest sarek
  • Update snpseq metadata service
  • Update TACA dependencies
  • MultiQC to v1.22.3
    • multiqc_ngi to 0.8.0
  • ngi_reports: Fix bug that the lane yield and Q30 values are inconsistent in the html and txt files
  • Turn off megaqc for sthlm for now
  • Arteria: Install dependency version specified in the requirements
  • CheckQC to v4.0.4
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