FragPipe v17.1

Downloading

• The zip (FragPipe-17.1.zip) doesn't contain Java, you will need Java 1.8+ to run.

• The other zip with -jre- in its name (FragPipe-jre-17.1.zip) contains a Java runtime for Windows only.

Running

• Unzip the file
• In /bin subdirectory you will find a shell script for Linux, bat file for Windows and an exe file for Windows

Note to Windows users

Windows 10 might show a UAC prompt, saying that this is not a trusted program, it's up to you whether to run it or not.

Changelog:

v17.1:

• Require MSFragger 3.4+
• Require Philosopher 4.1.0+
• Add Pierce iRT file
• Add contam_ prefix to contaminants in the downloaded database
• Add more workflows
• Upgrade PTM-Shepherd to 1.2.6
• Upgrade IonQuant to 1.7.17
• Upgrade TMT-Integrator to 3.2.1
• Upgrade MSBooster
• Various minor bug fixes and improvements