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I'm interested in extracting the list of matched b/y ions (not just total number of matched ions) for each PSM identified by MSFragger. Could you kindly instruct me on how to do it?
Thank you so much for your time.
The text was updated successfully, but these errors were encountered:
PDV (https://github.com/wenbostar/PDV) can match the peaks. If you want to have a column with matched ions in the output table, we don't have that yet. Will add this feature when we have time.
Hi! Just wondering if this is available yet? Would be really nice to have! (not just b/y ions, but also the neutral loss ions & a, c, x, z etc, with respective masses and intensities, like in the MQ msms.txt).
fcyu
transferred this issue from Nesvilab/MSFragger
Jun 14, 2022
I'm interested in extracting the list of matched b/y ions (not just total number of matched ions) for each PSM identified by MSFragger. Could you kindly instruct me on how to do it?
Thank you so much for your time.
The text was updated successfully, but these errors were encountered: