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NiftyNet Dev Meeting 5th July 2019

csudre edited this page Jul 6, 2019 · 1 revision

NiftyNet meeting 5th July 2019

Attendance Irme Marta Samuel Wenqi Zach Tom Ve. Carole

Update on ongoing work since Hackathon

  • Irme - Tom -> Whole validation still ongoing - Thread Edge cases - Should be ready by 2nd August - Thread issues
  • Marta - Framework to document network Constraints Reference… Comments merged For each network developer For related people to check -> to be further moved on the readthedocs
  • Samuel - Resampling + Work on CRF To liaise with Dan wrt CRF
  • Wenqi - Fix unit test Model zoo broken due to batch norm / Disable test for model zoo - Taking from numpy array.
  • Carole - csv_reader ready, multi_output ready - need to prevent change of name introduced by new nomenclature.
  • Zach - TF2.0 - Trickier than thought initially - Preprocessing difficult - Need to abstract preprocessing from application TF2 helper script use of tf.keras.layer

To chase / finish before 2nd August

  • Lucas - registration demo
  • Pedro + Richard - multi training demo
  • Eric + Dan - work on test dockerisation
  • Zach / Wenqi - pb of hard-coding of shuffling
  • Ben - Update on config/YAML input
  • Marta to find ways to flag unused arguments

Points of discussion

  • Dedicated served - waiting for DGX1 - will be easier with Docker in place
  • In the move towards API - need for discussion on preprocessing separation from application - Tom Va, Zach, Wenqi, Ben and Carole to meet before 2nd of August and design strategy forward
  • Timeline for switch to TF2.0 - Need for demo first and complete after API transition
  • MICCAI Release - Give a taster with TF2.0 through demos

Next meeting 2nd August 2pm

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