Merge pull request #291258 from Kupac/fix_pathfindR

rPackages.pathfindR: fix missing java
NixOS · Mar 1, 2024 · 72f01b2 · 72f01b2
2 parents 13a94ad + 34faa13
commit 72f01b2
Showing 1 changed file with 9 additions and 0 deletions.
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix
@@ -1048,6 +1048,15 @@ let
         '';
     });
 
+    pathfindR = old.pathfindR.overrideAttrs (attrs: {
+      postPatch = ''
+        substituteInPlace "R/zzz.R" \
+          --replace-fail "    check_java_version()" "    Sys.setenv(JAVA_HOME = \"${lib.getBin pkgs.jre_minimal}\"); check_java_version()"
+        substituteInPlace "R/active_snw_search.R" \
+          --replace-fail "system(paste0(\"java" "system(paste0(\"${lib.getBin pkgs.jre_minimal}/bin/java"
+      '';
+    });
+
     pbdZMQ = old.pbdZMQ.overrideAttrs (attrs: {
       postPatch = lib.optionalString stdenv.isDarwin ''
         for file in R/*.{r,r.in}; do