SPAdes: init at 3.13.1

NixOS · Oct 3, 2019 · 9fc6fc9 · 9fc6fc9
1 parent 0ea96ee
commit 9fc6fc9
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diff --git a/pkgs/applications/science/biology/spades/default.nix b/pkgs/applications/science/biology/spades/default.nix
@@ -0,0 +1,30 @@
+{ stdenv, fetchurl, zlib, bzip2, cmake }:
+
+stdenv.mkDerivation rec {
+  pname = "SPAdes";
+  version = "3.13.1";
+
+  src = fetchurl {
+    url = "http://cab.spbu.ru/files/release${version}/${pname}-${version}.tar.gz";
+    sha256 = "0giayz197lmq2108filkn9izma3i803sb3iskv9hs5snzdr9p8ld";
+  };
+
+  nativeBuildInputs = [ cmake ];
+
+  buildInputs = [ zlib bzip2 ];
+
+  doCheck = true;
+
+  postUnpack = ''
+    sourceRoot=''${sourceRoot}/src
+    echo Source root reset to ''${sourceRoot}
+  '';
+
+  meta = with stdenv.lib; {
+    description = "St. Petersburg genome assembler: assembly toolkit containing various assembly pipelines";
+    license = licenses.gpl2;
+    homepage = http://cab.spbu.ru/software/spades/;
+    platforms = platforms.unix;
+    maintainers = [ maintainers.bzizou ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
@@ -22975,6 +22975,8 @@ in
 
   seaview = callPackage ../applications/science/biology/seaview { };
 
+  SPAdes = callPackage ../applications/science/biology/spades { };
+
   trimal = callPackage ../applications/science/biology/trimal { };
 
   varscan = callPackage ../applications/science/biology/varscan { };