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r-modules: Fix some package references that are broken due to multipl…
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…e-outputs.
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@rbvermaa
rbvermaa committed Oct 20, 2016
1 parent a722f1b commit c4c2e44
Showing 1 changed file with 41 additions and 41 deletions.
82 changes: 41 additions & 41 deletions pkgs/development/r-modules/default.nix
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Expand Up @@ -243,7 +243,7 @@ let
BayesXsrc = [ pkgs.readline pkgs.ncurses ];
bigGP = [ pkgs.openmpi ];
BiocCheck = [ pkgs.which ];
Biostrings = [ pkgs.zlib ];
Biostrings = [ pkgs.zlib.dev ];
bnpmr = [ pkgs.gsl_1 ];
BNSP = [ pkgs.gsl_1 ];
cairoDevice = [ pkgs.gtk2 ];
Expand All @@ -252,15 +252,15 @@ let
chebpol = [ pkgs.fftw ];
ChemmineOB = [ pkgs.openbabel pkgs.pkgconfig ];
cit = [ pkgs.gsl_1 ];
curl = [ pkgs.curl ];
curl = [ pkgs.curl.dev ];
devEMF = [ pkgs.xorg.libXft ];
diversitree = [ pkgs.gsl_1 pkgs.fftw ];
EMCluster = [ pkgs.liblapack ];
fftw = [ pkgs.fftw ];
fftwtools = [ pkgs.fftw ];
Formula = [ pkgs.gmp ];
geoCount = [ pkgs.gsl_1 ];
git2r = [ pkgs.zlib pkgs.openssl ];
git2r = [ pkgs.zlib.dev pkgs.openssl.dev ];
GLAD = [ pkgs.gsl_1 ];
glpkAPI = [ pkgs.gmp pkgs.glpk ];
gmp = [ pkgs.gmp ];
Expand All @@ -279,68 +279,68 @@ let
mwaved = [ pkgs.fftw ];
ncdf4 = [ pkgs.netcdf ];
nloptr = [ pkgs.nlopt ];
openssl = [ pkgs.openssl ];
openssl = [ pkgs.openssl.dev ];
outbreaker = [ pkgs.gsl_1 ];
pander = [ pkgs.pandoc pkgs.which ];
pbdMPI = [ pkgs.openmpi ];
pbdNCDF4 = [ pkgs.netcdf ];
pbdPROF = [ pkgs.openmpi ];
PKI = [ pkgs.openssl ];
png = [ pkgs.libpng ];
PopGenome = [ pkgs.zlib ];
PopGenome = [ pkgs.zlib.dev ];
proj4 = [ pkgs.proj ];
qtbase = [ pkgs.qt4 ];
qtpaint = [ pkgs.qt4 ];
R2GUESS = [ pkgs.gsl_1 ];
R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
R2SWF = [ pkgs.zlib.dev pkgs.libpng pkgs.freetype ];
RAppArmor = [ pkgs.libapparmor ];
rapportools = [ pkgs.which ];
rapport = [ pkgs.which ];
rbamtools = [ pkgs.zlib ];
rbamtools = [ pkgs.zlib.dev ];
rcdd = [ pkgs.gmp ];
RcppCNPy = [ pkgs.zlib ];
RcppCNPy = [ pkgs.zlib.dev ];
RcppGSL = [ pkgs.gsl_1 ];
RcppOctave = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.octave ];
RcppOctave = [ pkgs.zlib.dev pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.octave ];
RcppZiggurat = [ pkgs.gsl_1 ];
rgdal = [ pkgs.proj pkgs.gdal ];
rgeos = [ pkgs.geos ];
rggobi = [ pkgs.ggobi pkgs.gtk2 pkgs.libxml2 ];
rgl = [ pkgs.mesa pkgs.xlibsWrapper ];
Rglpk = [ pkgs.glpk ];
RGtk2 = [ pkgs.gtk2 ];
Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ];
Rhtslib = [ pkgs.zlib ];
RJaCGH = [ pkgs.zlib ];
Rhpc = [ pkgs.zlib.dev pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ];
Rhtslib = [ pkgs.zlib.dev ];
RJaCGH = [ pkgs.zlib.dev ];
rjags = [ pkgs.jags ];
rJava = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.jdk pkgs.libzip ];
rJava = [ pkgs.zlib.dev pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.jdk pkgs.libzip ];
Rlibeemd = [ pkgs.gsl_1 ];
rmatio = [ pkgs.zlib ];
rmatio = [ pkgs.zlib.dev ];
Rmpfr = [ pkgs.gmp pkgs.mpfr ];
Rmpi = [ pkgs.openmpi ];
RMySQL = [ pkgs.zlib pkgs.mysql.lib ];
RMySQL = [ pkgs.zlib.dev pkgs.mysql.lib ];
RNetCDF = [ pkgs.netcdf pkgs.udunits ];
RODBCext = [ pkgs.libiodbc ];
RODBC = [ pkgs.libiodbc ];
rpg = [ pkgs.postgresql ];
rphast = [ pkgs.pcre pkgs.zlib pkgs.bzip2 pkgs.gzip pkgs.readline ];
rphast = [ pkgs.pcre pkgs.zlib.dev pkgs.bzip2 pkgs.gzip pkgs.readline ];
Rpoppler = [ pkgs.poppler ];
RPostgreSQL = [ pkgs.postgresql ];
RProtoBuf = [ pkgs.protobuf ];
rPython = [ pkgs.python ];
RSclient = [ pkgs.openssl ];
Rserve = [ pkgs.openssl ];
Rssa = [ pkgs.fftw ];
rtfbs = [ pkgs.zlib pkgs.pcre pkgs.bzip2 pkgs.gzip pkgs.readline ];
rtfbs = [ pkgs.zlib.dev pkgs.pcre pkgs.bzip2 pkgs.gzip pkgs.readline ];
rtiff = [ pkgs.libtiff ];
runjags = [ pkgs.jags ];
RVowpalWabbit = [ pkgs.zlib pkgs.boost ];
RVowpalWabbit = [ pkgs.zlib.dev pkgs.boost ];
rzmq = [ pkgs.zeromq3 ];
SAVE = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre ];
SAVE = [ pkgs.zlib.dev pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre ];
sdcTable = [ pkgs.gmp pkgs.glpk ];
seewave = [ pkgs.fftw pkgs.libsndfile ];
seqinr = [ pkgs.zlib ];
seqminer = [ pkgs.zlib pkgs.bzip2 ];
showtext = [ pkgs.zlib pkgs.libpng pkgs.icu pkgs.freetype ];
seqinr = [ pkgs.zlib.dev ];
seqminer = [ pkgs.zlib.dev pkgs.bzip2 ];
showtext = [ pkgs.zlib.dev pkgs.libpng pkgs.icu pkgs.freetype ];
simplexreg = [ pkgs.gsl_1 ];
SOD = [ pkgs.cudatoolkit ]; # requres CL/cl.h
spate = [ pkgs.fftw ];
Expand All @@ -349,8 +349,8 @@ let
stsm = [ pkgs.gsl_1 ];
stringi = [ pkgs.icu.dev ];
survSNP = [ pkgs.gsl_1 ];
sysfonts = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
TAQMNGR = [ pkgs.zlib ];
sysfonts = [ pkgs.zlib.dev pkgs.libpng pkgs.freetype ];
TAQMNGR = [ pkgs.zlib.dev ];
tiff = [ pkgs.libtiff ];
TKF = [ pkgs.gsl_1 ];
tkrplot = [ pkgs.xorg.libX11 ];
Expand All @@ -359,24 +359,24 @@ let
V8 = [ pkgs.v8 ];
VBLPCM = [ pkgs.gsl_1 ];
VBmix = [ pkgs.gsl_1 pkgs.fftw pkgs.qt4 ];
WhopGenome = [ pkgs.zlib ];
XBRL = [ pkgs.zlib pkgs.libxml2 ];
WhopGenome = [ pkgs.zlib.dev ];
XBRL = [ pkgs.zlib.dev pkgs.libxml2 ];
xml2 = [ pkgs.libxml2 ];
XML = [ pkgs.libtool pkgs.libxml2 pkgs.xmlsec pkgs.libxslt ];
affyPLM = [ pkgs.zlib ];
bamsignals = [ pkgs.zlib ];
BitSeq = [ pkgs.zlib ];
DiffBind = [ pkgs.zlib ];
ShortRead = [ pkgs.zlib ];
oligo = [ pkgs.zlib ];
gmapR = [ pkgs.zlib ];
Rsubread = [ pkgs.zlib ];
XVector = [ pkgs.zlib ];
Rsamtools = [ pkgs.zlib ];
rtracklayer = [ pkgs.zlib ];
affyio = [ pkgs.zlib ];
VariantAnnotation = [ pkgs.zlib ];
snpStats = [ pkgs.zlib ];
affyPLM = [ pkgs.zlib.dev ];
bamsignals = [ pkgs.zlib.dev ];
BitSeq = [ pkgs.zlib.dev ];
DiffBind = [ pkgs.zlib.dev ];
ShortRead = [ pkgs.zlib.dev ];
oligo = [ pkgs.zlib.dev ];
gmapR = [ pkgs.zlib.dev ];
Rsubread = [ pkgs.zlib.dev ];
XVector = [ pkgs.zlib.dev ];
Rsamtools = [ pkgs.zlib.dev ];
rtracklayer = [ pkgs.zlib.dev ];
affyio = [ pkgs.zlib.dev ];
VariantAnnotation = [ pkgs.zlib.dev ];
snpStats = [ pkgs.zlib.dev ];
};

packagesWithBuildInputs = {
Expand All @@ -390,7 +390,7 @@ let
qtpaint = [ pkgs.cmake ];
qtbase = [ pkgs.cmake pkgs.perl ];
gmatrix = [ pkgs.cudatoolkit ];
RCurl = [ pkgs.curl ];
RCurl = [ pkgs.curl.lib ];
R2SWF = [ pkgs.pkgconfig ];
rggobi = [ pkgs.pkgconfig ];
RGtk2 = [ pkgs.pkgconfig ];
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