python3Packages.numexpr: 2.8.4 -> 2.8.5

[de11n]

Description of changes

Upgrades numexpr. This, in particular, fixes numexpr in Nixpkgs when numpy is configured to use the MKL provider.

Things done

• Built on platform(s)
  • x86_64-linux
  • aarch64-linux
  • x86_64-darwin
  • aarch64-darwin
• For non-Linux: Is sandbox = true set in nix.conf? (See Nix manual)
• Tested, as applicable:
  • NixOS test(s) (look inside nixos/tests)
  • and/or package tests
  • or, for functions and "core" functionality, tests in lib/tests or pkgs/test
  • made sure NixOS tests are linked to the relevant packages
• Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
• Tested basic functionality of all binary files (usually in ./result/bin/)
• 23.11 Release Notes (or backporting 23.05 Release notes)
  • (Package updates) Added a release notes entry if the change is major or breaking
  • (Module updates) Added a release notes entry if the change is significant
  • (Module addition) Added a release notes entry if adding a new NixOS module
• Fits CONTRIBUTING.md.

[bjornfor]

IMHO, version bump commits should be just that, so please factor out the other changes in separate commit(s).

[de11n]

@bjornfor Done!

[bjornfor]

Result of nixpkgs-review pr 249791 run on x86_64-linux 1

4 packages marked as broken and skipped:

• python310Packages.elegy
• python310Packages.elegy.dist
• python311Packages.elegy
• python311Packages.elegy.dist

60 packages failed to build:

• openai-full
• openai-full.dist
• pentestgpt
• pentestgpt.dist
• python310Packages.apptools
• python310Packages.apptools.dist
• python310Packages.deepdish
• python310Packages.deepdish.dist
• python310Packages.envisage
• python310Packages.envisage.dist
• python310Packages.flammkuchen
• python310Packages.flammkuchen.dist
• python310Packages.langchain
• python310Packages.langchain.dist
• python310Packages.layoutparser
• python310Packages.layoutparser.dist
• python310Packages.mayavi
• python310Packages.mayavi.dist
• python310Packages.pandas-stubs
• python310Packages.pandas-stubs.dist
• python310Packages.pdfplumber
• python310Packages.pdfplumber.dist
• python310Packages.recordlinkage
• python310Packages.recordlinkage.dist
• python310Packages.scikit-survival
• python310Packages.scikit-survival.dist
• python310Packages.sfepy
• python310Packages.sfepy.dist
• python310Packages.stytra
• python310Packages.stytra.dist
• python310Packages.tables
• python310Packages.tables.dist
• python310Packages.unstructured-inference
• python310Packages.unstructured-inference.dist
• python311Packages.apptools
• python311Packages.apptools.dist
• python311Packages.deepdish
• python311Packages.deepdish.dist
• python311Packages.envisage
• python311Packages.envisage.dist
• python311Packages.flammkuchen
• python311Packages.flammkuchen.dist
• python311Packages.layoutparser
• python311Packages.layoutparser.dist
• python311Packages.mayavi
• python311Packages.mayavi.dist
• python311Packages.pandas-stubs
• python311Packages.pandas-stubs.dist
• python311Packages.pdfplumber
• python311Packages.pdfplumber.dist
• python311Packages.recordlinkage
• python311Packages.recordlinkage.dist
• python311Packages.scikit-survival
• python311Packages.scikit-survival.dist
• python311Packages.sfepy
• python311Packages.sfepy.dist
• python311Packages.tables
• python311Packages.tables.dist
• python311Packages.unstructured-inference
• python311Packages.unstructured-inference.dist

4 packages built:

• python310Packages.numexpr
• python310Packages.numexpr.dist
• python311Packages.numexpr
• python311Packages.numexpr.dist

[natsukium]

@ofborg build python310Packages.numexpr

[natsukium]

This bump seems to break python310Packages.tables

tables> ======================================================================
tables> ERROR: None (tables.tests.test_queries.ScalarTableUsageTestCase)
tables> ----------------------------------------------------------------------
tables> Traceback (most recent call last):
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/tests/test_queries.py", line 643, in test_unsupported_object
tables>     self.assertRaises(TypeError, self.table.where, '[]')
tables>   File "/nix/store/2c7sgx69p6mmp76cvmi5j6c72dj76jj8-python3-3.10.12/lib/python3.10/unittest/case.py", line 738, in assertRaises
tables>     return context.handle('assertRaises', args, kwargs)
tables>   File "/nix/store/2c7sgx69p6mmp76cvmi5j6c72dj76jj8-python3-3.10.12/lib/python3.10/unittest/case.py", line 201, in handle
tables>     callable_obj(*args, **kwargs)
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/table.py", line 1458, in where
tables>     return self._where(condition, condvars, start, stop, step)
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/table.py", line 1476, in _where
tables>     compiled = self._compile_condition(condition, condvars)
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/table.py", line 1334, in _compile_condition
tables>     compiled = compile_condition(condition, typemap, indexedcols)
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/conditions.py", line 393, in compile_condition
tables>     expr = ne.necompiler.stringToExpression(condition, typemap, {})
tables>   File "/nix/store/irywvhsb58b3ad0l2pgva425qhqn0w76-python3.10-numexpr-2.8.5/lib/python3.10/site-packages/numexpr/necompiler.py", line 274, in stringToExpression
tables>     raise ValueError(f'Expression {s} has forbidden control characters.')
tables> ValueError: Expression [] has forbidden control characters.
tables>
tables> ======================================================================
tables> ERROR: None (tables.tests.test_queries.ScalarTableUsageTestCase)
tables> ----------------------------------------------------------------------
tables> Traceback (most recent call last):
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/tests/test_queries.py", line 650, in test_unsupported_syntax
tables>     self.assertRaises(TypeError, self.table.where, 'c_bool[0]')
tables>   File "/nix/store/2c7sgx69p6mmp76cvmi5j6c72dj76jj8-python3-3.10.12/lib/python3.10/unittest/case.py", line 738, in assertRaises
tables>     return context.handle('assertRaises', args, kwargs)
tables>   File "/nix/store/2c7sgx69p6mmp76cvmi5j6c72dj76jj8-python3-3.10.12/lib/python3.10/unittest/case.py", line 201, in handle
tables>     callable_obj(*args, **kwargs)
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/table.py", line 1458, in where
tables>     return self._where(condition, condvars, start, stop, step)
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/table.py", line 1476, in _where
tables>     compiled = self._compile_condition(condition, condvars)
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/table.py", line 1334, in _compile_condition
tables>     compiled = compile_condition(condition, typemap, indexedcols)
tables>   File "/nix/store/zxv9vwfkaz2wd5a7bz2prmx5zm1gs88b-python3.10-tables-3.8.0/lib/python3.10/site-packages/tables/conditions.py", line 393, in compile_condition
tables>     expr = ne.necompiler.stringToExpression(condition, typemap, {})
tables>   File "/nix/store/irywvhsb58b3ad0l2pgva425qhqn0w76-python3.10-numexpr-2.8.5/lib/python3.10/site-packages/numexpr/necompiler.py", line 274, in stringToExpression
tables>     raise ValueError(f'Expression {s} has forbidden control characters.')
tables> ValueError: Expression c_bool[0] has forbidden control characters.
tables>
tables> ----------------------------------------------------------------------
tables> Ran 6702 tests in 1069.925s
tables>
tables> FAILED (errors=2, skipped=58)
error: builder for '/nix/store/82d1bpsp19dl12c17ssqxg0557qwyzds-python3.10-tables-3.8.0.drv' failed with exit code 1;

PyTables/PyTables#1046 seems to fix it.

[natsukium]

I think we can patch with the above commit.

[wegank]

Done in 5368625.