python311Packages.jupyter related packages updates

[natsukium]

Description of changes

Update jupyter-related packages at once to avoid building hundreds of packages over and over again.

This PR is based on the commits generated by the following command.

nix search nixpkgs#python311Packages jupyter --json | jq -r 'keys | .[]' | cut -d . -f 3,4 | xargs -n 1 nix-update --commit

Caution

jupyter-core 5.6.0 breaks jupyter-console jupyter/jupyter_console#298

They yanked jupyter-core 5.6.0 to the breaking change.
jupyter/jupyter_core#383 (comment)

Things done

• Built on platform(s)
  • x86_64-linux
  • aarch64-linux
  • x86_64-darwin
  • aarch64-darwin
• For non-Linux: Is sandboxing enabled in nix.conf? (See Nix manual)
  • sandbox = relaxed
  • sandbox = true
• Tested, as applicable:
  • NixOS test(s) (look inside nixos/tests)
  • and/or package tests
  • or, for functions and "core" functionality, tests in lib/tests or pkgs/test
  • made sure NixOS tests are linked to the relevant packages
• Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
• Tested basic functionality of all binary files (usually in ./result/bin/)
• 24.05 Release Notes (or backporting 23.05 and 23.11 Release notes)
  • (Package updates) Added a release notes entry if the change is major or breaking
  • (Module updates) Added a release notes entry if the change is significant
  • (Module addition) Added a release notes entry if adding a new NixOS module
• Fits CONTRIBUTING.md.

---

Add a 👍 reaction to pull requests you find important.

[natsukium]

Result of nixpkgs-review pr 277311 at 52420ed run on x86_64-linux 1

21 packages marked as broken and skipped:

• piper-train
• python310Packages.elegy
• python310Packages.jupyter-contrib-nbextensions
• python310Packages.kmapper
• python310Packages.qiskit
• python310Packages.qiskit-aer
• python310Packages.qiskit-finance
• python310Packages.qiskit-ibmq-provider
• python310Packages.qiskit-ignis
• python310Packages.qiskit-nature
• python310Packages.qiskit-optimization
• python310Packages.scikit-tda
• python310Packages.stytra
• python310Packages.treex
• python310Packages.unstructured-inference
• python311Packages.elegy
• python311Packages.jupyter-contrib-nbextensions
• python311Packages.kmapper
• python311Packages.scikit-tda
• python311Packages.stytra
• python311Packages.treex

60 packages failed to build:

• cantor (libsForQt5.cantor ,plasma5Packages.cantor)
• ihaskell
• labplot
• python310Packages.ansible-kernel
• python310Packages.arviz
• python310Packages.augmax
• python310Packages.ax
• python310Packages.bambi
• python310Packages.dalle-mini
• python310Packages.einops
• python310Packages.encodec
• python310Packages.flax
• python310Packages.ilua
• python310Packages.jupyter
• python310Packages.jupyter-console
• python310Packages.k-diffusion
• python310Packages.nbdev
• python310Packages.openllm
• python310Packages.phik
• python310Packages.pydeck
• python310Packages.pymc
• python310Packages.rotary-embedding-torch
• python310Packages.streamlit
• python310Packages.tf2onnx
• python310Packages.vega
• python310Packages.vqgan-jax
• python310Packages.xarray-einstats
• python311Packages.ansible-kernel
• python311Packages.arviz
• python311Packages.augmax
• python311Packages.ax
• python311Packages.bambi
• python311Packages.dalle-mini
• python311Packages.einops
• python311Packages.encodec
• python311Packages.flax
• python311Packages.ilua
• python311Packages.jupyter
• python311Packages.jupyter-console
• python311Packages.k-diffusion
• python311Packages.nbdev
• python311Packages.openllm
• python311Packages.phik
• python311Packages.pydeck
• python311Packages.pymc
• python311Packages.rotary-embedding-torch
• streamlit (python311Packages.streamlit)
• python311Packages.tf2onnx
• python311Packages.vega
• python311Packages.vqgan-jax
• python311Packages.xarray-einstats
• quarto
• rstudio
• rstudio-server
• rstudioServerWrapper
• rstudioWrapper
• sage
• sageWithDoc
• tts
• wolfram-notebook

293 packages built successfully:

• aitrack
• coconut (python311Packages.coconut)
• deface
• easyocr (python311Packages.easyocr)
• inkcut
• inkscape-extensions.inkcut
• jupyter
• jupyter-all
• livecaptions
• manim
• monado
• napari (python311Packages.napari)
• nbqa
• nbstripout
• obs-studio-plugins.obs-backgroundremoval
• onnxruntime
• onnxruntime.dev
• opencomposite-helper
• opsdroid
• piper-phonemize
• piper-tts
• python310Packages.altair
• python310Packages.anywidget
• python310Packages.atomman
• python310Packages.bash-kernel
• python310Packages.batchspawner
• python310Packages.bqplot
• python310Packages.bqscales
• python310Packages.calysto
• python310Packages.calysto-scheme
• python310Packages.cirq
• python310Packages.cirq-ft
• python310Packages.coconut
• python310Packages.cufflinks
• python310Packages.datashader
• python310Packages.devito
• python310Packages.dockerspawner
• python310Packages.easyocr
• python310Packages.experiment-utilities
• python310Packages.fastai
• python310Packages.fastembed
• python310Packages.faster-whisper
• python310Packages.ffcv
• python310Packages.folium
• python310Packages.glueviz
• python310Packages.gradio
• python310Packages.gradio-client
• python310Packages.insightface
• python310Packages.ipycanvas
• python310Packages.ipydatawidgets
• python310Packages.ipykernel
• python310Packages.ipympl
• python310Packages.ipynbname
• python310Packages.ipyniivue
• python310Packages.ipyparallel
• python310Packages.ipytablewidgets
• python310Packages.ipyvue
• python310Packages.ipyvuetify
• python310Packages.ipywidgets
• python310Packages.jupyter-book
• python310Packages.jupyter-c-kernel
• python310Packages.jupyter-cache
• python310Packages.jupyter-client
• python310Packages.jupyter-collaboration
• python310Packages.jupyter-contrib-core
• python310Packages.jupyter-core
• python310Packages.jupyter-lsp
• python310Packages.jupyter-nbextensions-configurator
• python310Packages.jupyter-server
• python310Packages.jupyter-server-fileid
• python310Packages.jupyter-server-mathjax
• python310Packages.jupyter-server-terminals
• python310Packages.jupyter-sphinx
• python310Packages.jupyterhub
• python310Packages.jupyterhub-ldapauthenticator
• python310Packages.jupyterhub-systemdspawner
• python310Packages.jupyterhub-tmpauthenticator
• python310Packages.jupyterlab
• python310Packages.jupyterlab-git
• python310Packages.jupyterlab-lsp
• python310Packages.jupyterlab-server
• python310Packages.jupytext
• python310Packages.labelbox
• python310Packages.layoutparser
• python310Packages.lightparam
• python310Packages.livelossplot
• python310Packages.memestra
• python310Packages.metakernel
• python310Packages.mkdocs-jupyter
• python310Packages.mmcv
• python310Packages.myst-nb
• python310Packages.napari
• python310Packages.napari-console
• python310Packages.nbclassic
• python310Packages.nbclient
• python310Packages.nbconflux
• python310Packages.nbconvert
• python310Packages.nbdime
• python310Packages.nbexec
• python310Packages.nbformat
• python310Packages.nbmerge
• python310Packages.nbsmoke
• python310Packages.nbsphinx
• python310Packages.nbval
• python310Packages.nikola
• python310Packages.nix-kernel
• python310Packages.notebook
• python310Packages.notebook-shim
• python310Packages.notedown
• python310Packages.oauthenticator
• python310Packages.onnx
• python310Packages.onnxconverter-common
• python310Packages.onnxmltools
• python310Packages.onnxruntime
• python310Packages.onnxruntime-tools
• python310Packages.orange3
• python310Packages.osmnx
• python310Packages.paddle2onnx
• python310Packages.papermill
• python310Packages.pdfplumber
• python310Packages.piper-phonemize
• python310Packages.potentials
• python310Packages.pweave
• python310Packages.pygmo
• python310Packages.pyls-memestra
• python310Packages.pymoo
• python310Packages.pytest-jupyter
• python310Packages.pytorch-pfn-extras
• python310Packages.qcodes
• python310Packages.qcodes-contrib-drivers
• python310Packages.qgrid
• python310Packages.qiskit-machine-learning
• python310Packages.qiskit-terra
• python310Packages.qtconsole
• python310Packages.schemdraw
• python310Packages.scikit-rf
• python310Packages.skl2onnx
• python310Packages.skrl
• python310Packages.spacy
• python310Packages.spacy-loggers
• python310Packages.spacy-lookups-data
• python310Packages.spacy-transformers
• python310Packages.spyder
• python310Packages.spyder-kernels
• python310Packages.testbook
• python310Packages.textacy
• python310Packages.textnets
• python310Packages.thinc
• python310Packages.tsfresh
• python310Packages.unidic
• python310Packages.unstructured-api-tools
• python310Packages.vector
• python310Packages.wandb
• python310Packages.wasabi
• python310Packages.weasel
• python310Packages.ziafont
• python310Packages.ziamath
• python311Packages.altair
• python311Packages.anywidget
• python311Packages.atomman
• python311Packages.bash-kernel
• python311Packages.batchspawner
• python311Packages.bqplot
• python311Packages.bqscales
• python311Packages.calysto
• python311Packages.calysto-scheme
• python311Packages.cirq
• python311Packages.cirq-ft
• python311Packages.cufflinks
• python311Packages.datashader
• python311Packages.devito
• python311Packages.dockerspawner
• python311Packages.experiment-utilities
• python311Packages.fastai
• python311Packages.fastembed
• python311Packages.faster-whisper
• python311Packages.ffcv
• python311Packages.folium
• python311Packages.glueviz
• python311Packages.gradio
• python311Packages.gradio-client
• python311Packages.insightface
• python311Packages.ipycanvas
• python311Packages.ipydatawidgets
• python311Packages.ipykernel
• python311Packages.ipympl
• python311Packages.ipynbname
• python311Packages.ipyniivue
• python311Packages.ipyparallel
• python311Packages.ipytablewidgets
• python311Packages.ipyvue
• python311Packages.ipyvuetify
• python311Packages.ipywidgets
• python311Packages.jupyter-book
• python311Packages.jupyter-c-kernel
• python311Packages.jupyter-cache
• python311Packages.jupyter-client
• python311Packages.jupyter-collaboration
• python311Packages.jupyter-contrib-core
• python311Packages.jupyter-core
• python311Packages.jupyter-lsp
• python311Packages.jupyter-nbextensions-configurator
• python311Packages.jupyter-server
• python311Packages.jupyter-server-fileid
• python311Packages.jupyter-server-mathjax
• python311Packages.jupyter-server-terminals
• python311Packages.jupyter-sphinx
• python311Packages.jupyterhub
• python311Packages.jupyterhub-ldapauthenticator
• python311Packages.jupyterhub-systemdspawner
• python311Packages.jupyterhub-tmpauthenticator
• python311Packages.jupyterlab
• python311Packages.jupyterlab-git
• python311Packages.jupyterlab-lsp
• python311Packages.jupyterlab-server
• python311Packages.jupytext
• python311Packages.labelbox
• python311Packages.layoutparser
• python311Packages.lightparam
• python311Packages.livelossplot
• python311Packages.memestra
• python311Packages.metakernel
• python311Packages.mkdocs-jupyter
• python311Packages.mmcv
• python311Packages.myst-nb
• python311Packages.napari-console
• python311Packages.nbclassic
• python311Packages.nbclient
• python311Packages.nbconflux
• python311Packages.nbconvert
• python311Packages.nbdime
• python311Packages.nbexec
• python311Packages.nbformat
• python311Packages.nbmerge
• python311Packages.nbsmoke
• python311Packages.nbsphinx
• python311Packages.nbval
• python311Packages.nikola
• python311Packages.nix-kernel
• python311Packages.notebook
• python311Packages.notebook-shim
• python311Packages.notedown
• python311Packages.oauthenticator
• python311Packages.onnx
• python311Packages.onnxconverter-common
• python311Packages.onnxmltools
• python311Packages.onnxruntime
• python311Packages.onnxruntime-tools
• python311Packages.orange3
• python311Packages.osmnx
• python311Packages.papermill
• python311Packages.pdfplumber
• python311Packages.piper-phonemize
• python311Packages.potentials
• python311Packages.pweave
• python311Packages.pygmo
• python311Packages.pyls-memestra
• python311Packages.pymoo
• python311Packages.pytest-jupyter
• python311Packages.pytorch-pfn-extras
• python311Packages.qcodes
• python311Packages.qcodes-contrib-drivers
• python311Packages.qgrid
• python311Packages.qtconsole
• python311Packages.schemdraw
• python311Packages.scikit-rf
• python311Packages.skl2onnx
• python311Packages.skrl
• python311Packages.spacy
• python311Packages.spacy-loggers
• python311Packages.spacy-lookups-data
• python311Packages.spacy-transformers
• spyder (python311Packages.spyder)
• python311Packages.spyder-kernels
• python311Packages.testbook
• python311Packages.textacy
• python311Packages.textnets
• python311Packages.thinc
• python311Packages.tsfresh
• python311Packages.unidic
• python311Packages.unstructured-api-tools
• python311Packages.vector
• python311Packages.wandb
• python311Packages.wasabi
• python311Packages.weasel
• python311Packages.ziafont
• python311Packages.ziamath
• rocmPackages.migraphx (rocmPackages_5.migraphx)
• rocmPackages.mivisionx (rocmPackages.mivisionx-hip ,rocmPackages_5.mivisionx ,rocmPackages_5.mivisionx-hip)
• rocmPackages.mivisionx-cpu (rocmPackages_5.mivisionx-cpu)
• rocmPackages.mivisionx-opencl (rocmPackages_5.mivisionx-opencl)
• snakemake
• whisper-ctranslate2

---

Result of nixpkgs-review pr 277311 at ebadc33 run on x86_64-linux 1

13 packages marked as broken and skipped:

• python310Packages.elegy
• python310Packages.jupyter-contrib-nbextensions
• python310Packages.qiskit
• python310Packages.qiskit-aer
• python310Packages.qiskit-finance
• python310Packages.qiskit-ibmq-provider
• python310Packages.qiskit-ignis
• python310Packages.qiskit-nature
• python310Packages.qiskit-optimization
• python310Packages.treex
• python311Packages.elegy
• python311Packages.jupyter-contrib-nbextensions
• python311Packages.treex

13 packages failed to build:

• cantor
• labplot
• python310Packages.bambi
• python310Packages.openllm
• python310Packages.pymc
• python310Packages.textnets
• python311Packages.bambi
• python311Packages.openllm
• python311Packages.pymc
• python311Packages.textnets
• sage
• sageWithDoc
• wolfram-notebook

180 packages built successfully:

• ihaskell
• jupyter
• jupyter-all
• manim
• nbqa
• opsdroid
• python310Packages.ansible-kernel
• python310Packages.arviz
• python310Packages.augmax
• python310Packages.batchspawner
• python310Packages.bqplot
• python310Packages.bqscales
• python310Packages.cirq
• python310Packages.cirq-ft
• python310Packages.dalle-mini
• python310Packages.datashader
• python310Packages.dockerspawner
• python310Packages.einops
• python310Packages.encodec
• python310Packages.experiment-utilities
• python310Packages.fastai
• python310Packages.flax
• python310Packages.folium
• python310Packages.ipytablewidgets
• python310Packages.jupyter
• python310Packages.jupyter-collaboration
• python310Packages.jupyter-contrib-core
• python310Packages.jupyter-lsp
• python310Packages.jupyter-nbextensions-configurator
• python310Packages.jupyter-server
• python310Packages.jupyter-server-fileid
• python310Packages.jupyter-server-mathjax
• python310Packages.jupyter-server-terminals
• python310Packages.jupyter-sphinx
• python310Packages.jupyterhub
• python310Packages.jupyterhub-ldapauthenticator
• python310Packages.jupyterhub-systemdspawner
• python310Packages.jupyterhub-tmpauthenticator
• python310Packages.jupyterlab
• python310Packages.jupyterlab-git
• python310Packages.jupyterlab-lsp
• python310Packages.jupyterlab-server
• python310Packages.jupytext
• python310Packages.k-diffusion
• python310Packages.labelbox
• python310Packages.layoutparser
• python310Packages.livelossplot
• python310Packages.memestra
• python310Packages.mkdocs-jupyter
• python310Packages.nbclassic
• python310Packages.nbconflux
• python310Packages.nbconvert
• python310Packages.nbdev
• python310Packages.nbdime
• python310Packages.nbexec
• python310Packages.nbsmoke
• python310Packages.nbsphinx
• python310Packages.nikola
• python310Packages.nix-kernel
• python310Packages.notebook
• python310Packages.notebook-shim
• python310Packages.notedown
• python310Packages.oauthenticator
• python310Packages.osmnx
• python310Packages.pdfplumber
• python310Packages.phik
• python310Packages.pweave
• python310Packages.pydeck
• python310Packages.pyls-memestra
• python310Packages.pymoo
• python310Packages.qgrid
• python310Packages.qiskit-machine-learning
• python310Packages.qiskit-terra
• python310Packages.rotary-embedding-torch
• python310Packages.spacy
• python310Packages.spacy-loggers
• python310Packages.spacy-lookups-data
• python310Packages.spacy-transformers
• python310Packages.spyder
• python310Packages.streamlit
• python310Packages.textacy
• python310Packages.thinc
• python310Packages.tsfresh
• python310Packages.unidic
• python310Packages.unstructured-api-tools
• python310Packages.vector
• python310Packages.vega
• python310Packages.vqgan-jax
• python310Packages.wasabi
• python310Packages.weasel
• python310Packages.xarray-einstats
• python311Packages.ansible-kernel
• python311Packages.arviz
• python311Packages.augmax
• python311Packages.batchspawner
• python311Packages.bqplot
• python311Packages.bqscales
• python311Packages.cirq
• python311Packages.cirq-ft
• python311Packages.dalle-mini
• python311Packages.datashader
• python311Packages.dockerspawner
• python311Packages.einops
• python311Packages.encodec
• python311Packages.experiment-utilities
• python311Packages.fastai
• python311Packages.flax
• python311Packages.folium
• python311Packages.ipytablewidgets
• python311Packages.jupyter
• python311Packages.jupyter-collaboration
• python311Packages.jupyter-contrib-core
• python311Packages.jupyter-lsp
• python311Packages.jupyter-nbextensions-configurator
• python311Packages.jupyter-server
• python311Packages.jupyter-server-fileid
• python311Packages.jupyter-server-mathjax
• python311Packages.jupyter-server-terminals
• python311Packages.jupyter-sphinx
• python311Packages.jupyterhub
• python311Packages.jupyterhub-ldapauthenticator
• python311Packages.jupyterhub-systemdspawner
• python311Packages.jupyterhub-tmpauthenticator
• python311Packages.jupyterlab
• python311Packages.jupyterlab-git
• python311Packages.jupyterlab-lsp
• python311Packages.jupyterlab-server
• python311Packages.jupytext
• python311Packages.k-diffusion
• python311Packages.labelbox
• python311Packages.layoutparser
• python311Packages.livelossplot
• python311Packages.memestra
• python311Packages.mkdocs-jupyter
• python311Packages.nbclassic
• python311Packages.nbconflux
• python311Packages.nbconvert
• python311Packages.nbdev
• python311Packages.nbdime
• python311Packages.nbexec
• python311Packages.nbsmoke
• python311Packages.nbsphinx
• python311Packages.nikola
• python311Packages.nix-kernel
• python311Packages.notebook
• python311Packages.notebook-shim
• python311Packages.notedown
• python311Packages.oauthenticator
• python311Packages.osmnx
• python311Packages.pdfplumber
• python311Packages.phik
• python311Packages.pweave
• python311Packages.pydeck
• python311Packages.pyls-memestra
• python311Packages.pymoo
• python311Packages.qgrid
• python311Packages.rotary-embedding-torch
• python311Packages.spacy
• python311Packages.spacy-loggers
• python311Packages.spacy-lookups-data
• python311Packages.spacy-transformers
• spyder (python311Packages.spyder)
• streamlit (python311Packages.streamlit)
• python311Packages.textacy
• python311Packages.thinc
• python311Packages.tsfresh
• python311Packages.unidic
• python311Packages.unstructured-api-tools
• python311Packages.vector
• python311Packages.vega
• python311Packages.vqgan-jax
• python311Packages.wasabi
• python311Packages.weasel
• python311Packages.xarray-einstats
• quarto
• rstudio
• rstudio-server
• rstudioServerWrapper
• rstudioWrapper
• tts

[natsukium]

I'm not sure why there is a conflict in ofborg, but there is no problem with my local machine.

   > Finished executing pythonRemoveTestsDir
   > Running phase: installCheckPhase
   > no Makefile or custom installCheckPhase, doing nothing
   > Running phase: pythonCatchConflictsPhase
   > Found duplicated packages in closure for dependency 'jupyter_server_terminals':
   >        jupyter_server_terminals 0.5.1 (/nix/store/kwp7ypkaij598w8j54rksl09blfkmvfy-python3.11-jupyter-server-terminals-0.5.1/lib/python3.11/site-packages/jupyter_server_terminals-0.5.1.dist-info)
   >   jupyter_server_terminals 0.5.1 (/nix/store/zpr979cv841mkxaivxbp3pr13mw6bfl0-python3.11-jupyter-server-terminals-0.5.1/lib/python3.11/site-packages/jupyter_server_terminals-0.5.1.dist-info)
   >
   > Package duplicates found in closure, see above. Usually this happens if two packages depend on different version of the same dependency.
   For full logs, run 'nix log /nix/store/r4a5wz1s19pj0xclfpri08l8759lhpmn-python3.11-jupyter-server-terminals-0.5.1.drv'.