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@OHDSI

Observational Health Data Sciences and Informatics

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  1. Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 666 395

  2. PALLAS: Build process for OMOP Standardized Vocabularies. Currently not available as independent release. Therefore, do not clone or try to replicate. It is work in progress and not ready for repli…

    PLpgSQL 144 62

  3. Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 203 97

  4. Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 31 32

  5. An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 65 46

  6. An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 138 80

Repositories

  • Athena Public

    Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM

    Java 41 19 52 8 Updated Aug 11, 2022
  • Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 31 32 12 1 Updated Aug 11, 2022
  • Vocabulary-v5.0 Public

    PALLAS: Build process for OMOP Standardized Vocabularies. Currently not available as independent release. Therefore, do not clone or try to replicate. It is work in progress and not ready for replication.

    PLpgSQL 144 Unlicense 62 155 21 Updated Aug 11, 2022
  • drat Public

    drat repository for OHDSI R packages

    4 6 0 0 Updated Aug 11, 2022
  • EmpiricalCalibration Public

    An R package for performing empirical calibration of observational study estimates

    R 9 8 1 0 Updated Aug 11, 2022
  • DbProfile Public

    dbProfile package to execute and/or export a subset of Achilles and DataQualityDashboard analyses

    R 0 Apache-2.0 0 1 0 Updated Aug 11, 2022
  • TSQL 1 2 0 0 Updated Aug 11, 2022
  • PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 138 80 36 3 Updated Aug 11, 2022
  • Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 203 Apache-2.0 96 231 (1 issue needs help) 10 Updated Aug 11, 2022
  • WebAPI Public

    OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    Java 95 Apache-2.0 123 97 (2 issues need help) 11 Updated Aug 11, 2022