Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM v4 database
An R package for generating features (covariates) for a cohort using data in the Common Data Model.
drat repository for OHDSI R packages
[Under development] Package for sharing of the results of the OHDSI tools
[Under development] OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
Build process for OMOP Standardized Vocabularies. DO NOT clone or try to replicate. It is work in progress and not ready for replication.
Repository of OHDSI Collaborative Research Protocols
This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.
An R package for connecting to databases using JDBC.
A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
[Under development] An R package for the evaluation of estimation methods
This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
An R package for performing patient level prediction.
ETL-CDMBuilder is a repo containing a .NET application to perform ETL to OMOP CDMv4 for multiple databases
Specifications and related files for the Common Data Model
ETL documentation for QuintilesIMS Data
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
An R package of support tools that didn’t fit other categories, including tools for maintaining R libraries.
Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and health outcomes of interest.
JCdmBuilder is a Java program that can be used to transform observational datasets from their native formats and schemas into the OMOP Common Data Model.
A command line Java application for parsing MEDLINE XML files and inserting the data into a relational database
The OMOP Standard Vocabulary creates a standardized representation of data in the OMOP CDM
An R package for performing (nested) matched case-control analyses in an observational database in the OMOP Common Data Model.