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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 879 450

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 217 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 266 136

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 38 32

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 57

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 187 88

Repositories

Showing 10 of 305 repositories
  • dbt-synthea Public

    [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

    OHDSI/dbt-synthea’s past year of commit activity
    Python 10 Apache-2.0 2 13 1 Updated Oct 5, 2024
  • OhdsiShinyModules Public

    An R package containing Shiny modules used by various OHDSI Shiny apps

    OHDSI/OhdsiShinyModules’s past year of commit activity
    R 8 11 50 4 Updated Oct 5, 2024
  • ResultModelManager Public

    RMM is an R package designed to handle common ohdsi results data management functions by providing a common API for data model migrations and definitions

    OHDSI/ResultModelManager’s past year of commit activity
    R 3 Apache-2.0 3 10 1 Updated Oct 5, 2024
  • Bouzyges Public
    OHDSI/Bouzyges’s past year of commit activity
    Python 3 1 0 0 Updated Oct 4, 2024
  • ETL-Synthea Public

    A package supporting the conversion from Synthea CSV to OMOP CDM

    OHDSI/ETL-Synthea’s past year of commit activity
    R 96 70 2 0 Updated Oct 4, 2024
  • CohortIncidence Public

    Contains the Java and R assets to perform Incidence calculations on a CDM

    OHDSI/CohortIncidence’s past year of commit activity
    R 5 2 6 0 Updated Oct 4, 2024
  • ShinyProxyDeploy Public

    Deploy OHDSI Shiny apps to results.ohdsi.org

    OHDSI/ShinyProxyDeploy’s past year of commit activity
    0 3 0 0 Updated Oct 4, 2024
  • DatabaseConnector Public

    An R package for connecting to databases using JDBC.

    OHDSI/DatabaseConnector’s past year of commit activity
    R 54 80 33 (2 issues need help) 3 Updated Oct 4, 2024
  • OHDSIAnalysisViewerDemo Public

    OHDSI Analysis Viewer: Demo (2024)

    OHDSI/OHDSIAnalysisViewerDemo’s past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 0 Updated Oct 4, 2024
  • DeepPatientLevelPrediction Public

    An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.

    OHDSI/DeepPatientLevelPrediction’s past year of commit activity
    R 10 4 19 (2 issues need help) 1 Updated Oct 4, 2024
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