@OHDSI

Observational Health Data Sciences and Informatics

  • Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.

    Java 8 5 Updated Feb 26, 2017
  • Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM v4 database

    HTML 35 41 Updated Feb 26, 2017
  • An R package for generating features (covariates) for a cohort using data in the Common Data Model.

    R 4 3 Updated Feb 25, 2017
  • drat repository for OHDSI R packages

    2 Updated Feb 24, 2017
  • [Under development] Package for sharing of the results of the OHDSI tools

    R 3 1 Updated Feb 24, 2017
  • [Under development] OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    Java 15 20 Updated Feb 24, 2017
  • ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 8 16 Updated Feb 24, 2017
  • Build process for OMOP Standardized Vocabularies. DO NOT clone or try to replicate. It is work in progress and not ready for replication.

    PLSQL 14 15 Updated Feb 23, 2017
  • Repository of OHDSI Collaborative Research Protocols

    R 6 11 Updated Feb 23, 2017
  • This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.

    R 2 5 Updated Feb 22, 2017
  • An R package for connecting to databases using JDBC.

    R 7 13 Updated Feb 22, 2017
  • A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.

    Shell 1 1 Updated Feb 21, 2017
  • An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 14 12 Updated Feb 21, 2017
  • Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 16 10 Updated Feb 18, 2017
  • R 1 1 Updated Feb 17, 2017
  • [Under development] An R package for the evaluation of estimation methods

    R 1 1 Updated Feb 17, 2017
  • This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

    R 7 15 Updated Feb 17, 2017
  • An R package for performing patient level prediction.

    R 15 10 Updated Feb 17, 2017
  • ETL-CDMBuilder is a repo containing a .NET application to perform ETL to OMOP CDMv4 for multiple databases

    C# 3 11 Updated Feb 13, 2017
  • Specifications and related files for the Common Data Model

    PLSQL 54 52 Updated Feb 8, 2017
  • ETL documentation for QuintilesIMS Data

    Updated Jan 30, 2017
  • WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

    Java 14 18 Updated Jan 27, 2017
  • An R package of support tools that didn’t fit other categories, including tools for maintaining R libraries.

    R 2 1 Updated Jan 20, 2017
  • Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and health outcomes of interest.

    HTML 18 11 Updated Jan 19, 2017
  • JCdmBuilder is a Java program that can be used to transform observational datasets from their native formats and schemas into the OMOP Common Data Model.

    R 1 5 Updated Jan 17, 2017
  • A command line Java application for parsing MEDLINE XML files and inserting the data into a relational database

    Java 4 7 Updated Jan 4, 2017
  • The OMOP Standard Vocabulary creates a standardized representation of data in the OMOP CDM

    PLSQL 4 1 Updated Dec 26, 2016
  • HTML 5 2 Updated Dec 26, 2016
  • An R package for performing (nested) matched case-control analyses in an observational database in the OMOP Common Data Model.

    R 3 1 Updated Dec 13, 2016
  • JavaScript Updated Dec 2, 2016