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DataQualityDashboard
A tool to help improve data quality standards in observational data science.
WebAPI
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
Vocabulary-v5.0
PALLAS: Build process for OMOP Standardized Vocabularies. Currently not available as independent release. Therefore, do not clone or try to replicate. It is work in progress and not ready for replication.
WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
ETL-LambdaBuilder
CDM Builder leveraging AWS Lambda
SkeletonComparativeEffectStudy
An R package that can be used as the starting point to implement a comparative effectiveness study.
ShinyDeploy
Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.
OncologyWG
Oncology Working Group Repository
ClinicalTrialsWGETL
[under development] ETL materials to support proposal for CDM enhancements for clinical trial data
EvidenceSynthesis
An R package for combining evidence from multiple sources (e.g. multiple data sites)
ArachneCommons
Commons module contains common code re-used between all Arachne components
ArachneNodeAPI
Arachne Data Node is a component that facilitates connection and communication between local databases and Arachne Central
SqlRender
This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
FeatureExtraction
An R package for generating features (covariates) for a cohort using data in the Common Data Model.
Broadsea-Shiny
A Docker container based on rocker/shiny with added java jdk and additional R packages.
AthenaUI
UI of web application for distributing and browsing the Standardized Vocabularies for the OMOP CDM
ArachneUIComponents
[under development] a open repository to host ARACHNE Common UI components
ETL-Synthea
Conversion from Synthea CSV to OMOP CDM
Achilles
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
ArachneExecutionEngine
Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
