0.7.0 - 2016-04-12

Code changes since 0.6.0

Special thanks to @sanea, @rumilbaybikov, and @juliakozlovsky for implementing #69 and #92.

Fixed

• RDF translation allows for RDF prefixes to be used. Default RDF prefixes are provided (Issue 69).

Added

• Annotation and Namespace definitions can now be remapped using a YAML file (Issue 92).
• An example remap file can be obtained from the command bel remapfile (Issue 92).

Release details

https://github.com/OpenBEL/bel.rb/wiki/Version-0.7.0

0.6.0 - 2016-03-15

Code changes since 0.5.0

Update using RubyGems: gem update bel

Fixed

• Serialization of BEL Script / XBEL can produce incorrect annotation and namespaces references (Issue #111).

Changed

• Separate random sampling from random data in BEL generator (Issue #105).
• Improved BEL quoting API. Deprecated previous API methods. (Issue #104).
• BEL and XBEL translators will now buffer on write to account for all annotation/namespace references. Pass the -t streaming=true option to bel translate to stream data when the references are consistent.

Added

• Added translator read/write option passing from the bel translate subcommand.

Development

• Added doctest Rake task to run YARD @example tests in method level documentation.
• Added gosh commands for running unit, integration and doctests (Issue #85).

Release details

https://github.com/OpenBEL/bel.rb/wiki/Version-0.6.0

0.5.0 - 2016-02-10

Code changes since 0.4.2

Fixes

• Fix missing RDF prefixes when converting BEL Script to RDF (Issue #71).
• Error translating to JSON Evidence format using Oj adapter (Issue #93).
• Consistent representation of Annotation and Namespace references in Evidence model and translators (Issue #94).
• RDF conversion of Parameter does not include encoding type statement (Issue #96).

Additions

• Introduced translators for additional RDF formats; split and removed the RDF translator in favor of one translator per RDF format (Issue #95).
• Warn when BEL namespace data could not be retrieved (Issue #97).
• Added generator for random BEL Nanopubs using the bel generate subcommand (Issue #102).
• Access BEL annotation resource values from external .belanno files (Issue #100).
• Support different types of serialization within the BEL Script translator (Issue #98).

Release details

https://github.com/OpenBEL/bel.rb/wiki/Version-0.5.0

Tagged as version 0.3.3; released to rubygems

Install

gem install bel -v 0.3.3

To install ruby, see INSTALL_RUBY.

For more details on installing the gem, see INSTALL.

Changelog

0.3.3 - 2015-08-07

Fixed

• ResourceIndex integration test causes intermittent timeouts (Issue #61).
• Support running on JRuby, including libbel native library (Issue #68).

Tagged 0.3.2; released to rubygems

Install

gem install bel -v 0.3.2

To install ruby, see INSTALL_RUBY.

For more details on installing the gem, see INSTALL.

Changelog

0.3.2 - 2015-07-31

Fixed

• Allow whitespace (space/tab) within blank lines (Issue #13).
• Parse CRLF line terminators (i.e. Windows) when parsing BEL Script (Issue #21).
• Allow whitespace before BEL Script records (Issue #25).
• Support RDF conversion of unicode string literals (Issue #40).
• Support translation from and to RDF (Issue #51).
• (Regression) Unable to parse BEL files on Windows (Issue #59).
• RDF "hasConcept" property triple is missing namespace (Issue #64).

Changed

• Updates defined namespaces to reflect the 20150611 resources.
• Full support for all BEL functions and relationships during RDF conversion.

Added

• Development gem dependencies (i.e. byebug, pry, pry-byebug) for debugging.

0.3.1

Install using rubygems:

gem install bel

To install ruby, see INSTALL_RUBY.

For more details on installing the gem, see INSTALL.