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Crashes on dumpottol #44

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josephwb opened this issue Jun 10, 2014 · 2 comments
Closed

Crashes on dumpottol #44

josephwb opened this issue Jun 10, 2014 · 2 comments

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@josephwb
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Dumps the taxonomy fine, but crashes on the synonyms with the error:

taxomachine version alpha.alpha.prealpha
dumping ottol relationships
life
dumping ottol synonym relationships
life

Exiting due to an exception:
 'ot:ottId' property not found for NodeImpl#3.
Stack trace:

org.neo4j.graphdb.NotFoundException: 'ot:ottId' property not found for NodeImpl#3.
    at org.neo4j.kernel.impl.core.Primitive.newPropertyNotFoundException(Primitive.java:193)
    at org.neo4j.kernel.impl.core.Primitive.getProperty(Primitive.java:188)
    at org.neo4j.kernel.impl.core.NodeImpl.getProperty(NodeImpl.java:53)
    at org.neo4j.kernel.impl.core.NodeProxy.getProperty(NodeProxy.java:155)
    at org.opentree.taxonomy.TaxonomySynthesizer.dumpPreferredOTTOLSynonymRelationships(TaxonomySynthesizer.java:505)
    at org.opentree.taxonomy.MainRunner.taxonomyQueryParser(MainRunner.java:330)
    at org.opentree.taxonomy.MainRunner.main(MainRunner.java:627)
@josephwb
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Ok, figured this out. Fixing it now.

josephwb added a commit that referenced this issue Jun 10, 2014
@josephwb
fix to crash on synonym dump issue #44
ea3e688
@josephwb
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Fixed as of ea3e688.

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@josephwb