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documentation: visualizing results using petab.visualize #162
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it should be possible to pass both |
I think the issue here is, that the 'observableParameters' column in the data-file is empty. I ran into the same issue recently. |
@fbergmann now it should work, could you try it again? |
@erikadudki it took a while to check, as it did not work immidiately. When i just reran the lines from the screenshot above, i still got an empty plot with the warning:
This does make it a bit harder, as most petab files come without a datasetId, and i'd have to generate it in many cases. So it would have been nice if This is what i wanted, however I would change the behavior in the drawing, such that the measurement data uses a dashed line and the simulationData a solid line. |
See also #152 |
…ss dataframes to the visualisation function as an alternative to file paths, fixes #162
as discussed over in the pyPESTO repo, i'm trying to visualize results obtained by pyPESTO. @yannikschaelte commented, that i should be using the
plot_data_and_simulation
function you provide with PEtab. It would be nice if that function would take just a petab problem + a data simulation data (frame) in the same format. As that would be exactly the information I have.but according to the information i should be able to get some result plotted using
data is attached.
data.tsv.txt
cond.tsv.txt
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