what's wrong with my yaml :(

PGScatalog · Sep 27, 2023 · 3ad7dfa · 3ad7dfa
1 parent f27529e
commit 3ad7dfa
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/.github/workflows/ancestry-vcf.yml b/.github/workflows/ancestry-vcf.yml
@@ -61,11 +61,10 @@ jobs:
       - name: Install plink2 to recode
         run: sudo apt-get install -y plink2
 
-      - name: Make VCF
         run: |
-	  plink2 --pfile ${{ env.ANCESTRY_TARGET_DIR }}/GRCh38_HAPNEST_TARGET_ALL vzs \
+	  plink2 --pfile ${ANCESTRY_TARGET_DIR}/GRCh38_HAPNEST_TARGET_ALL vzs \
 	    --export vcf bgz \
-	    --out ${{ env.ANCESTRY_TARGET_DIR }}/GRCh38_HAPNEST_TARGET_ALL
+	    --out ${ANCESTRY_TARGET_DIR}/GRCh38_HAPNEST_TARGET_ALL
 
       - name: Set up test requirements
         uses: actions/setup-python@v3