style: update pre-commit.yaml and fix ruff

[Gaiejj]

Description

• Update code style to meet the new requirement of ruff.
• Update pre-commit.yaml as well

Motivation and Context

ruff failed in PR #260, this PR fix it.

Types of changes

What types of changes does your code introduce? Put an x in all the boxes that apply:

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds core functionality)
• Breaking change (fix or feature that would cause existing functionality to change)
• Documentation (update in the documentation)

Checklist

Go over all the following points, and put an x in all the boxes that apply.
If you are unsure about any of these, don't hesitate to ask. We are here to help!

• I have read the CONTRIBUTION guide. (required)
• My change requires a change to the documentation.
• I have updated the tests accordingly. (required for a bug fix or a new feature)
• I have updated the documentation accordingly.
• I have reformatted the code using make format. (required)
• I have checked the code using make lint. (required)
• I have ensured make test pass. (required)

[codecov-commenter]

Codecov Report

Merging #261 (20aa2d0) into main (9e76d28) will decrease coverage by 0.03%.
The diff coverage is 100.00%.

❗ Current head 20aa2d0 differs from pull request most recent head f3cbb42. Consider uploading reports for the commit f3cbb42 to get more accurate results

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@@            Coverage Diff             @@
##             main     #261      +/-   ##
==========================================
- Coverage   97.00%   96.97%   -0.03%     
==========================================
  Files         138      138              
  Lines        6991     6991              
==========================================
- Hits         6781     6779       -2     
- Misses        210      212       +2     

Files Changed	Coverage Δ
omnisafe/algorithms/on_policy/second_order/pcpo.py	100.00% <ø> (ø)
omnisafe/algorithms/model_based/base/loop.py	97.87% <100.00%> (ø)
omnisafe/algorithms/model_based/base/pets.py	100.00% <100.00%> (ø)
omnisafe/utils/tools.py	98.43% <100.00%> (ø)

... and 1 file with indirect coverage changes

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