setup/ubuntu.sh does not install all dependencies needed to compile px4_sitl

[zeroos]

Describe the bug

I've set up a new Docker environment based on osrf/ros:humble-desktop-jammy.

Inside this docker container, I cloned PX4-Autopilot and ran ./setup/ubuntu.sh to install required dependencies. Unfortunately, I'm not able to compile px4_sitl in such a system:

root@michalX1:/setup_repos/PX4-Autopilot# make px4_sitl gazebo_iris
(...)
[615/892] Building CXX object src/modules/simulation/gz_bridge/CMakeFiles/modules__simulation__gz_bridge.dir/GZBridge.cpp.o
FAILED: src/modules/simulation/gz_bridge/CMakeFiles/modules__simulation__gz_bridge.dir/GZBridge.cpp.o
/usr/bin/c++ -DCONFIG_ARCH_BOARD_PX4_SITL -DENABLE_LOCKSTEP_SCHEDULER -DMODULE_NAME=\"gz_bridge\" -DPX4_MAIN=gz_bridge_app_main -D__CUSTOM_FILE_IO__ -D__PX4_LINUX -D__PX4_POSIX -D__STDC_FORMAT_MACROS -Dnoreturn_function="__attribute__((noreturn))" -I/setup_repos/PX4-Autopilot/boards/px4/sitl/src -I/setup_repos/PX4-Autopilot/platforms/posix/src/px4/common/include -I/setup_repos/PX4-Autopilot/build/px4_sitl_default -I/setup_repos/PX4-Autopilot/build/px4_sitl_default/src/lib -I/setup_repos/PX4-Autopilot/platforms/posix/src/px4/generic/generic/include -I/setup_repos/PX4-Autopilot/platforms/common -I/setup_repos/PX4-Autopilot/platforms/common/include -I/setup_repos/PX4-Autopilot/src -I/setup_repos/PX4-Autopilot/src/include -I/setup_repos/PX4-Autopilot/src/lib -I/setup_repos/PX4-Autopilot/src/lib/matrix -I/setup_repos/PX4-Autopilot/src/modules -I/setup_repos/PX4-Autopilot/platforms/posix/include -I/setup_repos/PX4-Autopilot/build/px4_sitl_default/external/Install/include -isystem /usr/include/ignition/transport11 -isystem /usr/include/ignition/cmake2 -isystem /usr/include/ignition/msgs8 -isystem /usr/include/ignition/math6 -isystem /usr/include/uuid -O2 -g -DNDEBUG -fPIC -g -fdata-sections -ffunction-sections -fomit-frame-pointer -fmerge-all-constants -fno-signed-zeros -fno-trapping-math -freciprocal-math -fno-math-errno -fno-strict-aliasing -fvisibility=hidden -include visibility.h -Wall -Wextra -Werror -Warray-bounds -Wcast-align -Wdisabled-optimization -Wdouble-promotion -Wfatal-errors -Wfloat-equal -Wformat-security -Winit-self -Wlogical-op -Wpointer-arith -Wshadow -Wuninitialized -Wunknown-pragmas -Wunused-variable -Wno-missing-field-initializers -Wno-missing-include-dirs -Wno-unused-parameter -fdiagnostics-color=always -Wno-stringop-truncation -fno-builtin-printf -fno-strength-reduce -Wformat=1 -Wunused-but-set-variable -Wno-format-truncation -fcheck-new -Wreorder -Wno-overloaded-virtual -frtti -fexceptions -O2 -D__KERNEL__ -I/usr/include/uuid -std=gnu++17 -MD -MT src/modules/simulation/gz_bridge/CMakeFiles/modules__simulation__gz_bridge.dir/GZBridge.cpp.o -MF src/modules/simulation/gz_bridge/CMakeFiles/modules__simulation__gz_bridge.dir/GZBridge.cpp.o.d -o src/modules/simulation/gz_bridge/CMakeFiles/modules__simulation__gz_bridge.dir/GZBridge.cpp.o -c /setup_repos/PX4-Autopilot/src/modules/simulation/gz_bridge/GZBridge.cpp
In file included from /usr/include/ignition/transport11/gz/transport.hh:25,
                 from /usr/include/ignition/transport11/ignition/transport.hh:18,
                 from /setup_repos/PX4-Autopilot/src/modules/simulation/gz_bridge/GZBridge.hpp:57,
                 from /setup_repos/PX4-Autopilot/src/modules/simulation/gz_bridge/GZBridge.cpp:34:
/usr/include/ignition/transport11/gz/transport/Clock.hh:24:10: fatal error: gz/utilities/SuppressWarning.hh: No such file or directory
   24 | #include <gz/utilities/SuppressWarning.hh>
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
[631/892] Performing build step for 'libmicroxrceddsclient_project'
ninja: build stopped: subcommand failed.
make: *** [Makefile:232: px4_sitl] Error 1
root@michalX1:/setup_repos/PX4-Autopilot#

I figured out that after doing apt-get install libignition-cmake2-dev, the compilation works.

I created a fork that installs this package in ubuntu.sh file [link], but I'm not sure if that's a good solution. It does work, but it seems for me like a problem is in the package manager. However, I'm not sure how to fix it. Please advise how to proceed, I'll be happy to help solving the problem.

[zeroos]

We've found out that apt-get update upgrade just after executing the Tools/setup/ubuntu.sh script updates the required package. It feels like for some reason apt-get decides to install an older version of the libignition-cmake2-dev package, even though a newer one does not conflict with anything and is actually the one we need for successful PX4 compilation.

[zeroos]

I've asked about it on Ubuntu Launchpad https://answers.launchpad.net/ubuntu/+source/gazebo/+question/704855