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too long time running run_filter_stage2 #372
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yes. you need |
Another note, if you have already get many many small |
Thanks Jason. 2016-05-24 10:41 GMT+08:00 Jason Chin notifications@github.com:
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Hi Jason,
However, the failure one (latest falcon release) generated a las.fofn file which contains all las file, including
Is this a bug or anything I did wrong? |
yes. it is a bug. I submitted a PR already. see #367 |
Could you tell us what commit you are using? The good news is that you will not need to re-run everything. After updating FALCON (the tip of
And restart. Stage-0 should be fine. |
Hello,
I am working on a plant genome pacbio assembly and I got 52 X corrected reads.
When feeding these preads to FALCON assembly, it took me more than two days running run_filter_stage2 and has not finished right now.
I checked the las.fofn file, which contains 323036 lines. I assume that the long running time is caused by so many las files?
Is that normal? Any suggestions?
Thanks a lot!
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