A toolkit for working with ATAC-seq data.
A companion repository to our chromatin information manuscript
BMO - a tool for predicting TF binding from ATAC-seq data
A toolkit for QC and visualization of ATAC-seq results.
C++ implementation of Buenrostro adapter trimming
Singularity definition files for various bioinformatics tasks
Code accompanying Islet sci-ATAC-seq project
Analyses of human pancreatic islet CAGE data
A lightweight tool for loading genomic data in deep learning applications
ATAC-seq lab for BIOINF545
Commands Template and Module for Automated Analysis of STARR-seq data.
Yet Another Motif Discovery Algorithm
Comparison of Super/Stretch enhancers, HOT regions and Broad Domains.
Standard Parker Lab ATAC-seq processing pipeline in Snakemake form
Recreate the computational analyses from Orchard, White, Thomas et al
Homebrew tap for software from the Parker Lab at the University of Michigan
A tool for generating analysis pipelines from templates.
A tool for submitting pipeline scripts to distributed resource managers.
Genome Structure Correction
ATAC-seq lab for BIOINF525