@PlantReactome

Plant Reactome

Home of the reference and comparative plant pathways

  • Contains the code and configuration for the website

    PHP 1 GPL-2.0 Updated Jul 11, 2018
  • Java 4 Updated Jun 29, 2018
  • Holds versioned, labeled RTPJ files of all Plant Reactome pathways - past, present, and future.

    Updated May 16, 2018
  • Holds singleton scripts and other code related to Plant Reactome data analysis projects

    Python Updated Mar 15, 2018
  • Holds issues related to the management of the databases underlying our Plant Reactome curation and projections. For example, requests for fixes and enhancements addressing AUTOMATED changes to our data live here.

    Updated Feb 28, 2018
  • Tracker for issues discovered during pre-release testing.

    Updated Feb 28, 2018
  • Tracker for Plant Reactome issues in Production, whether internally or externally reported.

    Updated Feb 28, 2018
  • Models the Reactome knowledgebase into a interconnected graph

    Java 3 Updated Jan 30, 2018
  • Java 2 Updated Jan 17, 2018
  • Java Updated Jan 16, 2018
  • Data model shared accross the widgets and browser

    Java 3 Updated Jan 16, 2018
  • Creates the files to be placed in the download section

    Java 1 Updated Jan 6, 2018
  • Pathway Exchange Code Repository

    Java 1 Updated Jan 5, 2018
  • Code and website structure for a release server

    PHP 4 Updated Jan 5, 2018
  • Java 1 Updated Dec 4, 2017
  • Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph

    Java 2 Updated Oct 25, 2017
  • A tool for visualising and interacting with pathways data

    Java 4 Updated Oct 23, 2017
  • GWT widget to visualise Reactome pathways

    Java 3 Updated Oct 23, 2017
  • A holding pen for pathways that caused problems when reviewed for addition to gk_central. We can use these to test any new QA scripts.

    Updated May 12, 2017
  • A genome-wide, hierarchical visualisation of pathways in a space-filling graph

    Java Updated Feb 28, 2017
  • Java 3 Updated Feb 27, 2017
  • A exporter of the diagram viewer to an ordinary Javascript API

    Java 3 Updated Feb 27, 2017
  • Java 3 Updated Feb 25, 2017
  • A exporter of the fireworks viewer to an ordinary Javascript API

    Java Updated Feb 4, 2017
  • Conversion tool for Reactome pathways to a 'light weight' format

    Java Updated Jan 18, 2017
  • Reactome content web-service

    Java 2 Updated Jan 14, 2017
  • Pathway enrichment and expression analysis as well as species comparison tool

    JavaScript 4 Updated Jan 10, 2017
  • Converts the Reactome knowledgebase into a interconnected graph

    Java 2 Updated Dec 22, 2016
  • Reactome search based on Apache Lucene Solr

    Java Updated Dec 13, 2016
  • A tool for visualising and interacting with pathways data

    Java 1 Updated Dec 1, 2016