Polymer not showing all xrefs (example: chitin in fungal pathogen/immunity response pathway)

[preecej]

Problem: Chitin simpleEntity is not showing the full xrefs for the polymer (R-ALL-9611192).

Possible cause: Appear to be missing some external reference data, or the code to display it.

Pathway examples:
Neg: Plant Reactome
Pos: Reactome Curator
Pos: Human Reactome

[naithanis]

How about peptidoglycan? which is from bacteria. Do we need to add bacteria and fungal species in slicing or somewhere to show these components? Sushma

…

On Fri, Aug 31, 2018 at 11:22 AM, Justin Preece ***@***.***> wrote: Problem: Chitin simpleEntity is not showing the full xrefs for the polymer (R-ALL-9611192). Possible cause: Appear to be missing some external reference data, or the code to display it. Pathway examples: Neg: Plant Reactome <http://cord3084-pc7.science.oregonstate.edu/PathwayBrowser/#/R-OSA-9611432&SEL=R-ALL-6786438> Pos: Reactome Curator <http://reactomecurator.oicr.on.ca/PathwayBrowser/#/R-OSA-9611432&SEL=R-ALL-6786438&PATH=R-OSA-2894885,R-OSA-9612650> Pos: Human Reactome <https://reactome.org/PathwayBrowser/#/R-HSA-8935690&SEL=R-ALL-6786438&PATH=R-HSA-8963743> — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#5>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AH0qa-WEQAMdFsr4zly4EXvNYMb4cUS3ks5uWX79gaJpZM4WVqcP> .

[jaiswalp]

We checked. It is not a species problem perse because small molecules don't have species associated with them. Pankaj

…

On 8/31/2018 11:47 AM, Sushma wrote: How about peptidoglycan? which is from bacteria. Do we need to add bacteria and fungal species in slicing or somewhere to show these components? Sushma On Fri, Aug 31, 2018 at 11:22 AM, Justin Preece ***@***.***> wrote: > Problem: Chitin simpleEntity is not showing the full xrefs for the polymer > (R-ALL-9611192). > > Possible cause: Appear to be missing some external reference data, or the > code to display it. > > Pathway examples: > Neg: Plant Reactome > <http://cord3084-pc7.science.oregonstate.edu/PathwayBrowser/#/R-OSA-9611432&SEL=R-ALL-6786438> > Pos: Reactome Curator > <http://reactomecurator.oicr.on.ca/PathwayBrowser/#/R-OSA-9611432&SEL=R-ALL-6786438&PATH=R-OSA-2894885,R-OSA-9612650> > Pos: Human Reactome > <https://reactome.org/PathwayBrowser/#/R-HSA-8935690&SEL=R-ALL-6786438&PATH=R-HSA-8963743> > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub > <#5>, or mute the > thread > <https://github.com/notifications/unsubscribe-auth/AH0qa-WEQAMdFsr4zly4EXvNYMb4cUS3ks5uWX79gaJpZM4WVqcP> > . > — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#5 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AHCSQElaGX7BwP1wlHCcxFIp-Z8NQNdlks5uWYS6gaJpZM4WVqcP>.

-- Pankaj Jaiswal, PhD Associate Professor Dept. of Botany and Plant Pathology 2082 Cordley Hall Oregon State University Corvallis, OR, 97331 USA Ph.: +1-541-737-8471 Fax: +1-541-737-3573 email: jaiswalp@oregonstate.edu Web: http://jaiswallab.cgrb.oregonstate.edu http://icbo-conference.org