academic/copasi: Updated for version 4.18.136.

Signed-off-by: David Spencer <idlemoor@slackbuilds.org>

academic/copasi/README

@@ -1,16 +1,16 @@
 COPASI is a package for modeling and simulation of biochemical networks,
 popular in the field of systems biology.
 
-COPASI is a stand-alone program that simulates models of biochemical 
-networks using ODE solvers or Gillespie's stochastic simulation 
-algorithm.  COPASI is compatible with models in SBML format.  It also 
-performs several analyses, such as steady state, stability, parameter 
-sensitivity, elementary modes, Lyapunov exponents, optimization, and 
-parameter estimation. Data can be visualized in plots, histograms and 
-animations of network diagrams.  COPASI's GUI is based on QT, but a 
-command line version is also included that allows for processing 
+COPASI is a stand-alone program that simulates models of biochemical
+networks using ODE solvers or Gillespie's stochastic simulation
+algorithm.  COPASI is compatible with models in SBML format.  It also
+performs several analyses, such as steady state, stability, parameter
+sensitivity, elementary modes, Lyapunov exponents, optimization, and
+parameter estimation. Data can be visualized in plots, histograms and
+animations of network diagrams.  COPASI's GUI is based on QT, but a
+command line version is also included that allows for processing
 computations in batch mode.
 
 COPASI is a collaboration between research groups at the Biocomplexity
 Institute at Virginia Tech, University of Heidelberg, University of
-Connecticut, University of Manchester, and previously the EML-Research.
+Connecticut, University of Manchester and previously the EML-Research.

academic/copasi/copasi.SlackBuild

@@ -23,7 +23,7 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=copasi
-VERSION=${VERSION:-4.17.135}
+VERSION=${VERSION:-4.18.136}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
@@ -43,7 +43,7 @@ if [ "$ARCH" = "i586" ]; then
 elif [ "$ARCH" = "x86_64" ]; then
   BINNAME="Linux-64bit"
 else
-  echo "$ARCH is not supported by the $PRGNAM build script."
+  echo "$ARCH is not supported by the $PRGNAM build script..."
   exit 1
 fi
 
@@ -55,15 +55,16 @@ set -e
 rm -rf $PKG
 mkdir -p $TMP $PKG $OUTPUT
 cd $TMP
-rm -rf COPASI-$VERSION-$BINNAME
+rm -rf COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION
 tar xvf $CWD/COPASI-$VERSION-$BINNAME.tar.gz
-cd COPASI-$VERSION-$BINNAME
+mv COPASI-$VERSION-$BINNAME $PRGNAM-$VERSION
+cd $PRGNAM-$VERSION
 chown -R root:root .
 find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
-  -o -perm 511 \) -exec chmod 755 {} \; -o \
+ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
+ -exec chmod 755 {} \; -o \
  \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
 
 mkdir -p $PKG/usr/bin $PKG/usr/share/{copasi,pixmaps,applications}
 cp -a bin/* $PKG/usr/bin/

academic/copasi/copasi.info

@@ -1,10 +1,10 @@
 PRGNAM="copasi"
-VERSION="4.17.135"
+VERSION="4.18.136"
 HOMEPAGE="http://www.copasi.org"
-DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-32bit.tar.gz"
-MD5SUM="d3d03eb1e4b24613d930b9b2adec5ee7"
-DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-135/COPASI-4.17.135-Linux-64bit.tar.gz"
-MD5SUM_x86_64="af6285199dcf877ad3450333c2b93201"
+DOWNLOAD="https://github.com/copasi/COPASI/releases/download/Build-136/COPASI-4.18.136-Linux-32bit.tar.gz"
+MD5SUM="95e2fe76b8af522de162aff2f227ea78"
+DOWNLOAD_x86_64="https://github.com/copasi/COPASI/releases/download/Build-136/COPASI-4.18.136-Linux-64bit.tar.gz"
+MD5SUM_x86_64="ab43c0852be21f335ec77d71122a08f4"
 REQUIRES=""
 MAINTAINER="Pedro Mendes"
 EMAIL="pedro@gepasi.org"