Clean source code

[veitveit]

Remove obsolete files

[jgriss]

@veitveit
How about renaming Example.ibnyp to TMT Workflow.ibnyp?

In the future, we might have additional notebooks, ie for phospho site analysis. Then, Exambple.ibnyp might not be the best name for it.

[veitveit]

Agreed

…

On Thu, 23 Aug 2018, 16:04 Johannes Griss, ***@***.***> wrote: @veitveit <https://github.com/veitveit> How about renaming Example.ibnyp to TMT Workflow.ibnyp? In the future, we might have additional notebooks, ie for phospho site analysis. Then, Exambple.ibnyp might not be the best name for it. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#61 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/APEZhUhmrqojHWcUXXGH0uULxFbcmfZYks5uTrZ0gaJpZM4WCfFZ> .

[jgriss]

@veitveit

Files I think can be removed:

• OrgPipeline
• .RHistory (should probably be added to .gitignore)
• Eubic_logo.png -> to misc
• Example_msnbase.ipynb

[veitveit]

Let's remove these files after the workshop to be on the safe side.

• pipeline.sh

The workflow could also be named "Isobaric Workflow.ipynb" so the missing "iTRAQ" does not confuse.