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I was trying to use the getPlotSetArray() function, but I got the error 'No genomes installed!' from the getREF function. I digged into the problem and it turns out that in the latest version of the BSgenome package the output of the function BSgenome::installed.genomes(splitNameParts=TRUE) changed from: pkgname organism provider provider_version masked
1 BSgenome.Hsapiens.UCSC.hg38 Hsapiens UCSC hg38 FALSE
to pkgname organism provider genome masked
1 BSgenome.Hsapiens.UCSC.hg38 Hsapiens UCSC hg38 FALSE
To fix the error I added at line 94 of the helper_functions.R script the new line: if( !length(GENOMES) ) GENOMES <- BSgenome::installed.genomes(splitNameParts=TRUE)$genome
Hope this helps!
The text was updated successfully, but these errors were encountered:
I was trying to use the getPlotSetArray() function, but I got the error 'No genomes installed!' from the getREF function. I digged into the problem and it turns out that in the latest version of the BSgenome package the output of the function BSgenome::installed.genomes(splitNameParts=TRUE) changed from:
pkgname organism provider provider_version masked
1 BSgenome.Hsapiens.UCSC.hg38 Hsapiens UCSC hg38 FALSE
to
pkgname organism provider genome masked
1 BSgenome.Hsapiens.UCSC.hg38 Hsapiens UCSC hg38 FALSE
To fix the error I added at line 94 of the helper_functions.R script the new line:
if( !length(GENOMES) ) GENOMES <- BSgenome::installed.genomes(splitNameParts=TRUE)$genome
Hope this helps!
The text was updated successfully, but these errors were encountered: