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Here is an example of the file format of a seq sum file when bacoding is turned on in minknow
filename_fastq filename_fast5 filename_pod5 parent_read_id read_id run_id channel mux minknow_events start_time duration passes_filtering template_start num_events_template template_duration sequence_length_template mean_qscore_template strand_score_template median_template mad_template pore_type experiment_id sample_id end_reason alias type barcode_arrangement barcode_full_arrangement barcode_kit barcode_variant barcode_score barcode_front_id barcode_front_score barcode_front_refseq barcode_front_foundseq barcode_front_foundseq_length barcode_front_begin_index barcode_rear_id barcode_rear_score barcode_rear_refseq barcode_rear_foundseq barcode_rear_foundseq_length barcode_rear_end_index PAW16103_fail_unclassified_438c8a51_ed9a488b_0.fastq.gz - PAW16103_438c8a51_ed9a488b_0.pod5 2d43c862-ad44-4609-88b8-86968a0b5c81 2d43c862-ad44-4609-88b8-86968a0b5c81 ed9a488bf2b7687b528a015d5a167792d03de949 246 1 799 16.865600 1.683800 FALSE 16.867600 1401 1.681800 1 1.000000 0.000000 -754.171814 0.007988 not_set PPTXXS240191 SAMPLE_pool1 signal_positive unclassified na unclassified LWB01_var1 LWB var1 -40.000000 BC01_FWD -40.000000 CCGTGACAAGAAAGTTGTCGGTGTCTTTGTGACTTGCCTGTCGCTCTATCTTC T 1 0 BC01_REV -40.000000 GCAATATCAGCACCAACAGAAACACAAAGACACCGACAACTTTCTTGTCACGG T 1 0
filename_fastq filename_fast5 filename_pod5 parent_read_id read_id run_id channel mux minknow_events start_time duration passes_filtering template_start num_events_template template_duration sequence_length_template mean_qscore_template strand_score_template median_template mad_template pore_type experiment_id sample_id end_reason alias type barcode_arrangement barcode_full_arrangement barcode_kit barcode_variant barcode_score barcode_front_id barcode_front_score barcode_front_refseq barcode_front_foundseq barcode_front_foundseq_length barcode_front_begin_index barcode_rear_id barcode_rear_score barcode_rear_refseq barcode_rear_foundseq barcode_rear_foundseq_length barcode_rear_end_index
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I think given we have released this and documented, it is not appropriate to change any column names now. We have to do changes with in these limits https://github.com/Psy-Fer/buttery-eel/blob/main/docs/formats.md
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Psy-Fer
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Here is an example of the file format of a seq sum file when bacoding is turned on in minknow
The text was updated successfully, but these errors were encountered: