Hifiasm
is a fast haplotype-resolved de novo assembler for PacBio HiFi reads.
For more information, please check its website: https://biocontainers.pro/tools/hifiasm and its home page on Github.
- 0.16.0
- 0.18.5
- hifiasm
You can load the modules by:
module load biocontainers module load hifiasm
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Hifiasm on our clusters:
#!/bin/bash #SBATCH -A myallocation # Allocation name #SBATCH -t 1:00:00 #SBATCH -N 1 #SBATCH -n 1 #SBATCH --job-name=hifiasm #SBATCH --mail-type=FAIL,BEGIN,END #SBATCH --error=%x-%J-%u.err #SBATCH --output=%x-%J-%u.out module --force purge ml biocontainers hifiasm