Introduction ~~~~~~~~ Pullseq is an utility program for extracting sequences from a fasta/fastq file.
For more information, please check:
BioContainers: https://biocontainers.pro/tools/pullseq
Home page: https://github.com/bcthomas/pullseq
BioContainers: https://biocontainers.pro/tools/pullseq
Home page: https://github.com/bcthomas/pullseq
- 1.0.2
Commands ~~~~~~~ - pcre-config - pcregrep - pcretest - pullseq - seqdiff
You can load the modules by:
module load biocontainers
module load pullseq
Example job ~~~~~ .. warning:: Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run pullseq on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pullseq
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pullseq