Pullseq is an utility program for extracting sequences from a fasta/fastq file.
For more information, please check:
BioContainers: https://biocontainers.pro/tools/pullseq
Home page: https://github.com/bcthomas/pullseq
- 1.0.2
- pcre-config
- pcregrep
- pcretest
- pullseq
- seqdiff
You can load the modules by:
module load biocontainers module load pullseq
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run pullseq on our clusters:
#!/bin/bash #SBATCH -A myallocation # Allocation name #SBATCH -t 1:00:00 #SBATCH -N 1 #SBATCH -n 1 #SBATCH --job-name=pullseq #SBATCH --mail-type=FAIL,BEGIN,END #SBATCH --error=%x-%J-%u.err #SBATCH --output=%x-%J-%u.out module --force purge ml biocontainers pullseq