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An insilico microscope of proteins

Proscope is a toolbox for examine proteins, developed by Xi Fu in Rabadan Lab, Program of Mathematical Genomics, Columbia University

Installation

mamba create -f environment.yml
# or 
mamba install -c conda-forge -c bioconda matplotlib numpy pandas seaborn biopython tqdm xmlschema scipy nglview py3Dmol
# or
pip install -e .

Usage example can be found in test folder.

Protein domain visualization

myc protein

ES Score

To plot ES score for any human reference protein, use this Jupyter notebook. https://colab.research.google.com/github/fuxialexander/proscope/blob/master/ES_Score.ipynb

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  • Jupyter Notebook 49.9%
  • Python 47.6%
  • Shell 2.1%
  • Dockerfile 0.4%