ReScience · rcaze · Jan 24, 2018 · Jan 24, 2018 · Jan 24, 2018 · Jan 24, 2018
diff --git a/article/.gitignore b/article/.gitignore
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+*.aux
+*.bbl
+*.bcf
+*.blg
+*.log
+*.out
+*.xml
+
diff --git a/article/Caze_2018.pdf b/article/Caze_2018.pdf
diff --git a/article/Caze_2018.tex b/article/Caze_2018.tex
diff --git a/article/Figs/grid_l_dt_100us_gs100.pdf b/article/Figs/grid_l_dt_100us_gs100.pdf
diff --git a/article/Figs/grid_l_dt_100us_gs100_mean.pdf b/article/Figs/grid_l_dt_100us_gs100_mean.pdf
diff --git a/article/Figs/grid_l_dt_100us_mean.pdf b/article/Figs/grid_l_dt_100us_mean.pdf
diff --git a/article/Figs/grid_nl_dt_100us_gs100.pdf b/article/Figs/grid_nl_dt_100us_gs100.pdf
diff --git a/article/Figs/grid_nl_dt_100us_gs100_detail.pdf b/article/Figs/grid_nl_dt_100us_gs100_detail.pdf
diff --git a/article/Figs/grid_nl_dt_100us_gs100_mean.pdf b/article/Figs/grid_nl_dt_100us_gs100_mean.pdf
diff --git a/article/Figs/grid_nl_dt_100us_gs100_mean_detail.pdf b/article/Figs/grid_nl_dt_100us_gs100_mean_detail.pdf
diff --git a/article/Figs/grid_nl_dt_100us_gs75.pdf b/article/Figs/grid_nl_dt_100us_gs75.pdf
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diff --git a/article/Figs/grid_nl_dt_100us_mean.pdf b/article/Figs/grid_nl_dt_100us_mean.pdf
diff --git a/article/Figs/grid_nl_dt_10us_gs100_detail.pdf b/article/Figs/grid_nl_dt_10us_gs100_detail.pdf
diff --git a/article/Figs/grid_nl_dt_10us_gs100_mean_detail.pdf b/article/Figs/grid_nl_dt_10us_gs100_mean_detail.pdf
diff --git a/article/Figs/grid_nl_dt_50us_gs100_detail.pdf b/article/Figs/grid_nl_dt_50us_gs100_detail.pdf
diff --git a/article/Figs/grid_nl_dt_50us_gs100_mean_detail.pdf b/article/Figs/grid_nl_dt_50us_gs100_mean_detail.pdf
diff --git a/article/Figs/markov_l_dt_100us.pdf b/article/Figs/markov_l_dt_100us.pdf
diff --git a/article/Figs/markov_l_dt_100us_corrected.pdf b/article/Figs/markov_l_dt_100us_corrected.pdf
diff --git a/article/Figs/markov_nl_dt_100us.pdf b/article/Figs/markov_nl_dt_100us.pdf
diff --git a/article/Figs/markov_nl_dt_100us_corrected.pdf b/article/Figs/markov_nl_dt_100us_corrected.pdf
diff --git a/article/Figs/spikes_l_dt_100us.pdf b/article/Figs/spikes_l_dt_100us.pdf
diff --git a/article/Figs/spikes_nl_dt_100us.pdf b/article/Figs/spikes_nl_dt_100us.pdf
diff --git a/article/Figs/spikes_nl_strong_dt_100us.pdf b/article/Figs/spikes_nl_strong_dt_100us.pdf
diff --git a/article/Figs/spikes_nl_strong_dt_10us.pdf b/article/Figs/spikes_nl_strong_dt_10us.pdf
diff --git a/article/LICENSE.txt b/article/LICENSE.txt
diff --git a/article/Makefile b/article/Makefile
diff --git a/article/Name-YEAR.md b/article/Name-YEAR.md
diff --git a/article/Name-YEAR.pdf b/article/Name-YEAR.pdf
diff --git a/article/README.md b/article/README.md
@@ -1,32 +1,14 @@
-### Important
-
-Don't forget to change the name of the Name-YEAR file to reflect all the
-authors name and the current year.
-
 ### Required tools for producing the pdf
 
-You'll need [pandoc](http://pandoc.org) (a universal document converter) and a
-full [TeX distribution](https://www.tug.org/texlive/).
-
-For pandoc, you'll also need the
-[pandoc-crossref](https://github.com/lierdakil/pandoc-crossref) filter that you can
-easily install with:
-
-```
-$ cabal update
-$ cabal install pandoc-crossref
-```
+You'll need a full [TeX distribution](https://www.tug.org/texlive/).
 
 ### How to build the PDF ?
 
 In a console, type:
 
 ```
-pandoc --standalone --filter ~/.cabal/bin/pandoc-crossref --template=rescience-template.tex --latex-engine=xelatex --biblatex --bibliography=bibliography.bib -M "crossrefYaml=crossref.yaml" --output Name-YEAR.tex Name-YEAR.md
-xelatex Name-YEAR
-biber Name-YEAR
-xelatex Name-YEAR
-xelatex Name-YEAR
+xelatex Caze-2018.tex
+biber Caze-2018
+xelatex Caze-2018.tex
+xelatex Caze-2018.tex
 ```
-
-Alternativaley, you can also type `make` after having edited the Makefile.
diff --git a/article/biblio.bib b/article/biblio.bib
@@ -0,0 +1,73 @@
+@article{Poirazi2003a,
+author = {Poirazi, Panayiota and Brannon, Terrence and Mel, Bartlett W.},
+issn = {0896-6273},
+journal = {Neuron},
+month = {mar},
+number = {6},
+pages = {989--999},
+publisher = {Elsevier},
+doi = {10.1016/S0896-6273(03)00149-1},
+title = {Pyramidal neuron as two-layer neural network},
+volume = {37},
+year = {2003}
+}
+
+@article{Stimberg2014,
+author = {Stimberg, Marcel and Goodman, Dan F. M. and Benichoux, Victor and Brette, Romain},
+doi = {10.3389/fninf.2014.00006},
+issn = {1662-5196},
+journal = {Front. Neuroinform.},
+number = {February},
+pages = {6},
+pmid = {24550820},
+title = {{Equation-oriented specification of neural models for simulations.}},
+volume = {8},
+year = {2014}
+}
+@article{Memmesheimer2012,
+author = {Memmesheimer, Raoul Martin and Timme, Marc},
+doi = {10.1371/journal.pcbi.1002384},
+editor = {Graham, Lyle J.},
+issn = {1553734X},
+journal = {PLoS Computational Biology},
+month = {apr},
+number = {4},
+pages = {e1002384},
+pmid = {22532791},
+publisher = {Public Library of Science},
+title = {{Non-additive coupling enables propagation of synchronous spiking activity in purely random networks}},
+volume = {8},
+year = {2012}
+}
+
+@article{Goodman2009,
+	title = {The {Brian} simulator},
+	volume = {3},
+	doi = {10.3389/neuro.01.026.2009},
+	journal = {Front. Neurosci.},
+	author = {Goodman, Dan F. M. and Brette, Romain},
+	year = {2009}
+}
+
+@article{Muller2015,
+	title = {Python in neuroscience},
+	volume = {9},
+	issn = {1662-5196},
+	doi = {10.3389/fninf.2015.00011},
+	journal = {Front. Neuroinform.},
+	author = {Muller, Eilif and Bednar, James A. and Diesmann, Markus and Gewaltig, Marc-Oliver and Hines, Michael and Davison, Andrew P.},
+	year = {2015}
+}
+
+@article{Softky1994,
+	title = {Sub-millisecond coincidence detection in active dendritic trees},
+	volume = {58},
+	issn = {0306-4522},
+	doi = {10.1016/0306-4522(94)90154-6},
+	number = {1},
+	journal = {Neuroscience},
+	author = {Softky, William},
+	month = jan,
+	year = {1994},
+	pages = {13--41}
+}
diff --git a/article/bibliography.bib b/article/bibliography.bib
diff --git a/article/crossref.yaml b/article/crossref.yaml