added new workflows #117
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# This is file is automatically generated. Do not edit. | |
name: 'freesurfer' | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
on: | |
push: | |
branches: ["test_docker_build"] | |
jobs: | |
freesurfer: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
base_image: ['ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim', 'fedora:36', 'centos:7'] | |
version: ['7.4.1', '7.3.2', '7.3.1', '7.3.0', '7.2.0', '7.1.1', '7.1.1-min', '7.1.0', '6.0.1', '6.0.0', '6.0.0-min'] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
- name: Install neurodocker | |
run: python -m pip install --editable .[dev] | |
- name: Generate Dockerfile | |
run: | | |
apt_based=('ubuntu:22.04', 'ubuntu:18.04', 'debian:bullseye-slim', 'debian:buster-slim') | |
if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then | |
pkg_manager="apt" | |
fi | |
yum_based=('fedora:36', 'centos:7') | |
if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then | |
pkg_manager="yum" | |
fi | |
neurodocker \ | |
generate docker \ | |
--base-image=${{ matrix.base_image }} \ | |
--pkg-manager=${pkg_manager} \ | |
--yes \ | |
--freesurfer \ | |
version=${{ matrix.version }} \ | |
> Dockerfile_tmp | |
cat Dockerfile_tmp | |
- name: Build the Docker image | |
run: docker build -f Dockerfile_tmp . |