modifying value for entry point to allow -arg or --arg

[djarecka]

this PR would allow to have -arg and --arg when using "", e.g. "command -arg"

fixes #507

[codecov]

Codecov Report

Patch coverage: 100.00% and project coverage change: +0.02 🎉

Comparison is base (19b6a94) 88.77% compared to head (85cf1b7) 88.79%.

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #515      +/-   ##
==========================================
+ Coverage   88.77%   88.79%   +0.02%     
==========================================
  Files          11       11              
  Lines        1033     1035       +2     
==========================================
+ Hits          917      919       +2     
  Misses        116      116              

Impacted Files	Coverage Δ
neurodocker/cli/generate.py	91.73% <100.00%> (+0.07%)	⬆️

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[kaczmarj]

let me test this and get back to you. thanks for tackling the issue

[kaczmarj]

thanks dorota, this works for me. i ran the following

neurodocker generate docker --base-image debian --pkg-manager apt --entrypoint "bash -c"

and I got the following Dockerfile:

# Generated by Neurodocker and Reproenv.

FROM debian
ENTRYPOINT ["bash", "-c"]

# Save specification to JSON.
RUN printf '{ \
  "pkg_manager": "apt", \
  "existing_users": [ \
    "root" \
  ], \
  "instructions": [ \
    { \
      "name": "from_", \
      "kwds": { \
        "base_image": "debian" \
      } \
    }, \
    { \
      "name": "entrypoint", \
      "kwds": { \
        "args": [ \
          "bash", \
          "-c" \
        ] \
      } \
    } \
  ] \
}' > /.reproenv.json
# End saving to specification to JSON.

[kaczmarj]

feel free to merge once the tests pass