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NEWS
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What's new in suzerain 0.1.7
----------------------------
Postprocessing in support of Rhys' dissertation
This release contains the following with tickets numbers referencing content
from https://red.ices.utexas.edu/projects/suzerain:
* Feature #2164: Create post-processing scripts based on HDF5 channel_mean output
* Feature #3127: Add derivative operators to summary file
* Feature #3128: Correct running averages of implicit forcing
* Bug #2444: Determine why FANS budget isn't coming back nearly zero
What's new in suzerain 0.1.6
----------------------------
Operational and postprocessing fixes for production.
This release contains the following with tickets numbers referencing content
from https://red.ices.utexas.edu/projects/suzerain:
* Feature #1604: 1D spectra monitor
* Feature #2465: Reynolds- or Favre-mean nu, epsilon in Kolmogorov length scale?
* Feature #2471: Sample quantities in support of Reynolds averaging
* Feature #2563: Collect Nusselt and Stanton numbers
* Feature #2580: Add various squared fluctuating quantities to statistics
* Feature #2610: Add mean Favre-fluctuations
* Feature #2611: Use mean density, velocity not mean momentum in local_Re computation
* Feature #2612: Add y^* to post-processing scripts
* Feature #3112: Save some QoI in summary files
* Feature #3118: Sample quantities towards RMS Mach number profile
* Feature #3119: Add operator for wall-normal integration
* Feature #3120: Collect mean-square dilatation fluctuations
* Feature #3122: Add driver option to temporarily constrain freestream
* Feature #3123: Increase restart frequency for boundary layers
* Support #3124: Bump Largo to version 0.0.2
* Bug #3116: Minor drift in sample time relative to restart?
* Bug #3117: Fix dist-hook, etc overrides from version tracking
* Bug #3121: Ensure --statistics_final=0 honored
What's new in suzerain 0.1.5
----------------------------
Production-ready for homogenized boundary layers.
This release contains the following with tickets numbers referencing content
from https://red.ices.utexas.edu/projects/suzerain:
* Feature #3088: Prepare coarse nondimensional boundary layer near CEV conditions
* Feature #3100: Final Coleman-like channel runs
* Feature #3109: Use higher order NRBC on wall-only implicit treatment
* Feature #3110: Prepare nondimensional boundary layer near CEV 3.199
* Feature #3111: Gather additional turbulence "health" traces
* Feature #3113: L2xyz on puzzling data
* Feature #3115: Get QoI into summary file
* Bug #3089: Correct gathering of slow growth statistics
* Bug #3108: Inconsistent edge vs edge99 in suzerain_bl_compute_reynolds
* Bug #3114: Misbehaving higher-order NRBC for implicit=rhome_y
What's new in suzerain 0.1.4
----------------------------
Interim release to clear books of closed tickets.
This release contains the following with tickets numbers referencing content
from https://red.ices.utexas.edu/projects/suzerain:
* Feature # 795: Use AC_OPENMP in Suzerain build
* Feature #1845: Consider moving to new AX_PROG_{CC,FC,F77,CXX}_MPI macros
* Feature #1945: Rethink log4cxx configuration procedure
* Feature #2182: Add channel_plot wrapper of gnuplot geared for channel_mean
* Feature #2582: Collect Reynolds-averaged Reynolds stresses
* Feature #2583: Add various vorticity-related quantities to sampling routines
* Feature #2662: Collect terms mentioned in Luker, Hale, and Bowersox
* Feature #2665: Collect quantities from Latin and Bowersox table 3
* Feature #2782: Determine injection species concentrations
* Feature #2983: Exactly impose subsonic outflow viscous conditions
* Feature #2998: Compute two-point correlations
* Feature #3009: Output Re_tau as part of bl.wall
* Feature #3045: Summarize final boundary layer or channel from driver_base_summary
* Feature #3058: Prepare nondimensional boundary layer
* Feature #3066: Fix corespernode functionality within sbatch scripts
* Feature #3070: Check implicit NRBC performance on subsonic inflows
* Feature #3082: Scale Largo epsilon cutoffs from mean density
* Feature #3090: Compute more QoI from edge99, not edge
* Feature #3099: Make --undriven default behavior with baseflow
* Feature #3105: Get B-spline details into application startup
* Bug #2599: Account for functionals of the expectation
* Bug #3065: Please remove personal information from sbatch scripts
* Bug #3078: largo_BL_spatiotemporal_consistent_preStep_baseflow ignores src_base
* Bug #3097: Investigate sanity of changing Ny
What's new in suzerain 0.1.2
----------------------------
Interim release to clear books of closed tickets.
This release contains the following with tickets numbers referencing content
from https://red.ices.utexas.edu/projects/suzerain:
* Feature #1536: Investigate slow growth in suzerain context
* Feature #1537: Investigate Rayleigh problem favorable pressure equivalent
* Feature #1729: Determine Suzerain's contribution to Victor's DNS run planning chart
* Feature #2129: Fix heat shield search space
* Feature #2366: Add tacc_affinity to TACC jobscripts
* Feature #2442: Fix column headers in channel_mean text output
* Feature #2463: Improve default restart file behavior
* Feature #2616: Add Ma_tau to channel_mean output
* Feature #2621: Add B_q to postproc/channel.m output
* Feature #2664: Compute skin friction
* Feature #2736: Move post-processing to shared driver infrastructure
* Feature #2853: Integral constraints need to use homogeneous BCs
* Feature #2856: Get RPATH working
* Feature #2979: Add implicit NRBC implementations
* Feature #2985: Fix compiler warnings on GCC 4.6
* Feature #2992: Investigate spatiotemporal slow growth in suzerain context
* Feature #2999: Investigate spatiotemporal slow growth with FPG baseflow
* Feature #3007: Add turnover time computation
* Feature #3022: Revisit what @scenario.Ma@ and @scenario.Re@ mean in the baseflow context
* Feature #3023: Add delta99
* Feature #3024: Merge ESIO/Underling builds as done with Largo
* Feature #3034: Avoid loss of timestep statistics on encountering NaN
* Feature #3036: Compute inviscid wave speeds for slow growth
* Feature #3037: Ensure delta working cleanly against FPG boundary layers
* Feature #3038: Generate FPG BLs for larger wall-normal domain extent
* Feature #3039: Investigate if --undriven=all causes FPG BL freestreams to drift
* Feature #3042: Add flowthrough time to QoI
* Feature #3046: Add simulation time per flowthrough or per turnover
* Feature #3052: Add functionality to allow the user to set the amplitude growth rate parameters
* Feature #3055: Log max an min values of state variables
* Feature #3056: Sample max and min values of state variables along y
* Feature #3057: Fix benign shadow warning
* Feature #3060: Change default restart_retain
* Feature #3061: Add cache_binary call to TACC jobscripts
* Feature #3068: Add default restart time for wall-driven channels
* Feature #3076: Codify some handy matplotlib commands
* Feature #3079: Rework L2 broadcasting logic to be robust in presence of race
* Feature #3080: SVNREV strings not making it into binaries
* Feature #3086: Check code unit scaling on tau_w and u_tau
* Support #3033: Get homogenized FPG baseflows behaving as expected
* Bug #2809: Fix non-default zcgbsvx options
* Bug #2973: Fix yelling when spec.lower_rho or spec.upper_rho inappropriate
* Bug #2997: Correct largo_init for tensor-consistent SG models
* Bug #3048: Value thick->delta inconsistent with edge->y
* Bug #3073: zgbsv solver w/ NRBC may be broken in apps/perfect
* Bug #3077: Enabling spatiotemporal consistent formulation kills all fluctuations
What's new in suzerain 0.1.1
----------------------------
Initial public release of Suzerain!
This release contains the following with tickets numbers referencing content
from https://red.ices.utexas.edu/projects/suzerain:
* Feature # 709: Create test plan/progression for Suzerain
* Feature #1322: Design non-reflecting BCs for the freestream to be implemented in physical space
* Feature #1446: Add banded matrix types to Octave
* Feature #1609: Compute L2 as a function of wall-normal position
* Feature #1912: Investigate Scalable Checkpoint Restart (SCR)
* Feature #1918: Bring up Suzerain on Hera or Cab
* Feature #2128: Add transpiration to model document
* Feature #2183: Add implementation of linearized curl curl velocity term
* Feature #2191: Restructure apps/ directory for additional binaries
* Feature #2197: Have status_dt, restart_dt, statistics_dt work modulo some time
* Feature #2287: Optimize banded matrix routines for "middle" conditions
* Feature #2399: Preliminary testing of reflecting BCs
* Feature #2480: Prepare a shared driver to use in both perfect/reacting
* Feature #2481: Permit detecting channel vs boundary layer restart files
* Feature #2484: Document implicit solve to being wall-normal only
* Feature #2485: Reduce implicit solve to being wall-normal only
* Feature #2488: Incorporate passive scalar capabilities
* Feature #2489: Verify explicit for perfect gas against constant-coefficient MMS
* Feature #2490: Incorporate reacting scalars through Cantera
* Feature #2491: Implement non-reflecting BCs for the freestream in physical space
* Feature #2492: Permit initializing channel vs boundary layer profiles
* Feature #2493: Collect wall-normal mean profiles necessary for slow growth forcing
* Feature #2494: Document slow growth within Suzerain
* Feature #2495: Implement slow growth forcing within nonlinear.hpp
* Feature #2497: Update ScenarioDefinition and restart format for slow growth parameters
* Feature #2498: Verify reacting scalar computations
* Feature #2500: Merge passive scalar capabilities with slow growth boundary layer
* Feature #2501: Merge reacting flow capabilities with slow growth boundary layer
* Feature #2502: Add slow growth forcing for chemical reactions
* Feature #2503: Add slow growth pressure gradient capabilities
* Feature #2504: Add passive scalars to Suzerain model document
* Feature #2505: Implement wall transpiration for perfect gas only
* Feature #2507: Implement wall transpiration for passive scalars
* Feature #2508: Implement wall transpiration for reacting scalars
* Feature #2509: Accommodate variable Prandtl number in formulation
* Feature #2510: Add enthalpy diffusion to total energy equation
* Feature #2511: Add freestream forcing for slow growth after step completes
* Feature #2512: Perform scaling study on DOE system
* Feature #2513: Ensure nondimensional code can be run dimensionally
* Feature #2518: Accommodate variable gamma in formulation
* Feature #2519: Accommodate non-power-law temperature in formulation
* Feature #2520: Design how pressure is handled implicitly in reacting flow
* Feature #2532: Prepare flux-based, fully explicit, dimensional formulation
* Feature #2533: Design linearization for reacting equation of state
* Feature #2534: Design filtering approach
* Feature #2535: Implement fully explicit operator for zero or more species concentration equations
* Feature #2536: Implement implicit, linearized operator
* Feature #2537: Combine "R" and "L" as "N(u) = R(u) - Lu"
* Feature #2553: Add explicit FLIBS configure check
* Feature #2562: Track bulk density constraint in FANS averages
* Feature #2570: Implement Cook and Cabot JCP 2005 Filter
* Feature #2581: Move physical_view into libsuzerain
* Feature #2584: Evaluate Cook and Cabot filter on DNS field from Suzerain
* Feature #2585: Compute eigenstructure of Cook and Cabot filtering operator
* Feature #2617: Add sqrt(T*) to gathered statistical quantities
* Feature #2641: Update licensing for release
* Feature #2663: Compute boundary-layer shape factor
* Feature #2735: Test shared driver for use in both reacting/perfect
* Feature #2748: Output centerline y grid vs spanwise/streamwise spacing
* Feature #2780: r37469 breaks legacy field loading
* Feature #2788: Implement filter source on flux-based formulation
* Feature #2800: Consolidate init binaries in apps/reacting
* Feature #2807: Banish HAVE_CONFIG_H from tests and apps/reacting
* Feature #2808: Fix --solver=zgbsvx,equil=true
* Feature #2828: Correct autoconf version requirement for Fortran usage
* Feature #2829: Get -xHost into FCFLAGS from AX_CC_MAXOPT
* Feature #2835: Permit monitoring state derivatives at the wall
* Feature #2842: Add "viscous" filter capability
* Feature #2843: Run tests for injecting and nonreflecting boundary conditions
* Feature #2858: Add viscosity output for reacting
* Feature #2859: Statistics gathering for reacting
* Feature #2861: Tabulate suzerain_bspline_htstretch1_evdeltascale
* Feature #2862: Revisit off-diagonal terms in "viscous" filter
* Feature #2864: Implement non-reflecting upper boundary for reacting
* Feature #2872: Move viscous filter implementation out of @apply_navier_stokes_spatial_operator@
* Feature #2874: Investigate Timings in Suzerain for Varying B-Spline Orders
* Feature #2897: Test slow growth for laminar flows
* Feature #2929: Reuse on the reacting implementation the @constraint_treatment@ approach from perfect
* Feature #2930: Permit constraining second derivatives at upper boundary
* Feature #2963: Compute boundary layer quantities at status time
* Feature #2980: Problem with thickness computation on temporal formulation
* Feature #2981: BL quantity computation can bring down a simulation
* Feature #2989: Construct integration coefficients for less than whole domain
* Feature #2991: Mean freestream constraints must match baseflow
* Feature #3000: Three thousand
* Feature #3003: Mean freestream constraint enforcement profiles must match baseflow
* Feature #3004: Output B_q as part of bl.qoi
* Feature #3005: Recompute statistics if any is not present in the restart file, and when the advance timesteps is set to 0
* Feature #3006: Allow to output the sample file only when recomputing statistics
* Feature #3010: Integrate BL QoI only up to the edge
* Feature #3018: what(): ...encountered ++table.lower_bound(y) == table.end()
* Feature #3020: Revisit Te/Tw in baseflow computations
* Feature #3021: Investigate deltaH and Re_deltaH results from #3010
* Support #2487: Build common prerequisites on lonestar
* Support #2796: sl6 build issue
* Support #2821: Incorporate one-off P3DFFT into lib/p3dfft
* Support #2891: Search for Memory Leak
* Support #2895: Allow --with-esio or equivalent with suzerain
* Bug #2473: channel_mean appears to be failing on restart files
* Bug #2482: Determine why hybrid transform_wave_to_physical is 2x explicit-only case
* Bug #2514: Double check autotools prereq versions are correct
* Bug #2515: Determine why make check is failing for Victor on GCC debug builds
* Bug #2557: Laminar 'channel --implicit --advance_nt=10 restart0.h5 --Nx=3 --Nz=10' fatal error
* Bug #2595: HDF5 v1.8.8 or later breaks unit tests
* Bug #2729: Pass 'make check' on Intel 12.1
* Bug #2783: svn rev info leads to spurious test failures
* Bug #2805: Failure of test_restart_explicit.sh for perfect implementation with intel/11.1
* Bug #2813: suzerain/timers.h contains a glaring scoping issue
* Bug #2818: Why is diter giving weird statistics?
* Bug #2826: Isothermal, no-slip BC probably subtly broken
* Bug #2833: Test failures on @gcc/4.6@ on @--enable-debug=info@
* Bug #2838: wall_mass_fractions
* Bug #2845: h5diff version detection b0rked on Lonestar
* Bug #2857: Used Cp where I meant Cv
* Bug #2868: explicit nan'ing on coleman-like channel
* Bug #2871: apps/reacting/test_restart_multispecies_implicit.sh failing
* Bug #2884: Get bulk_rho_E working for --explicit
* Bug #2887: Instability in quiet channel field atop r39350
* Bug #2971: Workaround -pedantic log4cxx issues on buildbot.ices.
* Bug #2974: precision errors in apps/reacting unit testing
* Bug #2996: Remove annoying messages for boundary layers
* Document #2572: Revisit breakpoint stretching to ensure it can be recreated from documentation
* Document #2824: Unify documentation for reacting flow
* Document #2869: reacting model doc not building correctly...
* Software Engineering #2483: Measure wall-normal-only implicit channel against explicit version