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50 Open 7 Closed
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Issues list

add to readme to use pytom-template-matching-gpu repo for latest updates
#58 opened Feb 8, 2024 by McHaillet
@McHaillet
template matching module should become a dependency of pytom
#57 opened Feb 8, 2024 by McHaillet
@sroet
segmentation violation error at template matching step
#10 opened Oct 12, 2023 by madelinerollins
8
possible refactors
#11 opened Aug 18, 2023 by McHaillet
2 tasks
use cupy.cuda functions instead of avail_gpu in pytom/gui/guiFunctions.py
#55 opened Aug 11, 2023 by sroet
remove function update_env_vars from pytom/convert/mdoc2meta.py
#54 opened Aug 11, 2023 by sroet
Missing Files During PyTom Installation
#8 opened Jul 10, 2023 by ChenchenXu0401
2
We should ignore more autogenerated files
#53 opened May 24, 2023 by sroet
Possible Dead code
#56 opened May 17, 2023 by sroet
1 of 5 tasks
Possible code duplications
#52 opened May 3, 2023 by sroet
2 tasks
1
Make sure failing E2E bin scripts that error also fail tests
#51 opened Apr 26, 2023 by sroet
bin scripts should call python instead of pytom - requires GPU environment fix
#50 opened Apr 24, 2023 by McHaillet
1
1
mirror test template matching should be same in GUI and fullpipeline e2e-test
#49 opened Mar 28, 2023 by McHaillet
GUI should work without queue system
#48 opened Mar 28, 2023 by sroet
gpu template matching should queue subvolumes on single gpu
#47 opened Mar 28, 2023 by McHaillet
1
switch to logging instead of printing
#46 opened Mar 15, 2023 by sroet
remove license printing enhancement New feature or request
#45 opened Mar 6, 2023 by McHaillet
e2e tests need to be reviewed
#43 opened Feb 21, 2023 by McHaillet
6
c++ library import needs to be updated everywhere in pytom
#44 opened Feb 17, 2023 by McHaillet
INFR reconstruction not working + needs test
#42 opened Feb 17, 2023 by McHaillet
suggested update for pytom agnostic libraries without gpu environment variable enhancement New feature or request
#41 opened Feb 17, 2023 by McHaillet
maximum run time for gpu template matching hard coded
#40 opened Feb 3, 2023 by McHaillet
@McHaillet
gui batch mode wont work if there is no available queueing system
#39 opened Feb 3, 2023 by McHaillet
Particle list filtering is slooooow enhancement New feature or request
#38 opened Jan 9, 2023 by McHaillet
@McHaillet
subtomogram recon GUI: tomo origin of particle list can only have restricted names ('tomogram_###.mrc') enhancement New feature or request
#37 opened Jan 9, 2023 by McHaillet
@McHaillet
ProTip! Updated in the last three days: updated:>2024-05-11.