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Fix problem where segmentations couldn't be used with DeepSSM testing. #4042

Fix problem where segmentations couldn't be used with DeepSSM testing.

Fix problem where segmentations couldn't be used with DeepSSM testing. #4042

Workflow file for this run

name: Windows Build
on:
push:
branches:
- master
- release_v*
tags:
- '*'
pull_request:
env:
# Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
BUILD_TYPE: Release
SW_CLOUD_LOGIN: ${{ secrets.CLOUD_LOGIN }}
CACHE_HOST: ${{ secrets.SSH_HOST }}
GA_MEASUREMENT_ID: ${{ secrets.GA_MEASUREMENT_ID }}
GA_API_SECRET: ${{ secrets.GA_API_SECRET }}
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
build:
runs-on: windows-2019
steps:
- name: Add to path
shell: bash -l {0}
run: echo "C:\Miniconda\condabin" >> $GITHUB_PATH
- name: Check path
shell: bash -l {0}
run: echo "$PATH"
- name: Init conda
shell: bash -l {0}
run: /c/Miniconda/condabin/conda.bat init --all
# - name: link
# shell: bash -l {0}
# run: cd /usr/bin && ln -s /c/Miniconda/condabin/conda.bat conda
# - name: Check Conda
# shell: bash -l {0}
# run: /c/Miniconda/condabin/conda.bat info
# - name: Check path
# shell: bash -l {0}
# run: ls /c/Miniconda/condabin
# - name: Check path
# shell: bash -l {0}
# run: which conda.bat
- name: Check Conda
shell: bash -l {0}
run: conda info
# - name: Setup Conda
# uses: conda-incubator/setup-miniconda@v2.2.0
# with:
# miniconda-version: 'latest'
- name: Install SSH Key
uses: shimataro/ssh-key-action@v2
with:
key: ${{ secrets.SSH_PRIVATE_KEY }}
known_hosts: ${{ secrets.KNOWN_HOSTS }}
- name: Checkout code
uses: actions/checkout@v3
with:
lfs: true
- name: Get tags
run: git fetch --unshallow origin +refs/tags/*:refs/tags/*
- name: Get NSIS
working-directory: ${{runner.workspace}}
run: |
curl -o nsis.zip http://www.sci.utah.edu/~amorris/NSISPortable_3.04.zip
Expand-Archive -LiteralPath nsis.zip -DestinationPath .
- name: Restore Caches
shell: bash -l {0}
run: .github/workflows/restore_caches.sh
- name: Conda Installs
shell: bash -l {0}
run: .github/workflows/gha_conda.sh
- name: Build Dependencies
shell: bash -l {0}
run: .github/workflows/gha_deps.sh
- name: Create Build Environment
# Some projects don't allow in-source building, so create a separate build directory
# We'll use this as our working directory for all subsequent commands
run: cmake -E make_directory "C:/build"
- name: Check Disk Space1
working-directory: ${{runner.workspace}}
shell: bash -l {0}
run: df -h
- name: Configure CMake
# Use a bash shell so we can use the same syntax for environment variable
# access regardless of the host operating system
shell: bash -l {0}
working-directory: "C:/build"
# Note the current convention is to use the -S and -B options here to specify source
# and build directories, but this is only available with CMake 3.13 and higher.
# The CMake binaries on the Github Actions machines are (as of this writing) 3.12
run: conda activate shapeworks && cmake $GITHUB_WORKSPACE -DCMAKE_CXX_FLAGS="-FS" -DCMAKE_C_FLAGS="-FS" -DCMAKE_CXX_FLAGS_RELEASE="-FS /Zm500 /Zi /GL /MD /O2 /Ob3 /DNDEBUG /EHsc" -DCMAKE_C_FLAGS_RELEASE="-FS /Zi /GL /MD /O2 /Ob3 /DNDEBUG /EHsc" -DCMAKE_SHARED_LINKER_FLAGS_RELEASE="-LTCG /DEBUG" -DCMAKE_EXE_LINKER_FLAGS_RELEASE="-LTCG /DEBUG" -DCMAKE_BUILD_TYPE=$BUILD_TYPE -DITK_DIR="C:\deps\lib\cmake\ITK-5.2" -DVTK_DIR="C:\deps\lib\cmake\vtk-9.1" -DXLNT_DIR="C:\deps" -DLIBIGL_DIR="C:\deps" -DJKQTCommonSharedLib_DIR="C:/deps/lib/cmake/JKQTCommonSharedLib" -DJKQTMathTextSharedLib_DIR="C:/deps/lib/cmake/JKQTMathTextSharedLib" -DJKQTPlotterSharedLib_DIR="C:/deps/lib/cmake/JKQTPlotterSharedLib" -DOpenVDB_DIR="C:\deps\lib\cmake\OpenVDB" -DGEOMETRYCENTRAL_DIR="C:\deps" -DACVD_DIR="C:\deps" -DBuild_Studio=ON -DGA_MEASUREMENT_ID=$GA_MEASUREMENT_ID -DGA_API_SECRET=$GA_API_SECRET
- name: Build
working-directory: "C:/build"
shell: bash -l {0}
# Execute the build. You can specify a specific target with "--target <NAME>"
run: conda activate shapeworks && cmake --build . --config $BUILD_TYPE --parallel
- name: Check Disk Space2
working-directory: ${{runner.workspace}}
shell: bash -l {0}
run: df -h
- name: Copy Libraries
working-directory: "C:/build"
run: xcopy /f C:\deps\bin\*.dll C:\build\bin\Release
- name: Build Binary Package
shell: bash -l {0}
env:
PR_NUMBER: ${{ github.event.number }}
run: conda activate shapeworks && source ${GITHUB_WORKSPACE}/devenv.sh ./bin/Release && pwd ; ls ; cp docs/users/Windows_README.txt . ; cp Support/shapeworks.nsi . ; conda activate shapeworks && source ${GITHUB_WORKSPACE}/devenv.sh ./bin/Release && ./Support/package_windows.sh tag
- name: Check Disk Space3
working-directory: ${{runner.workspace}}
shell: bash -l {0}
run: df -h
- name: Download test data
shell: bash -l {0}
run: .github/workflows/download_test_data.sh
- name: Test
working-directory: "C:/build"
shell: bash -l {0}
# Execute tests defined by the CMake configuration.
# See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail
run: conda activate shapeworks && source ${GITHUB_WORKSPACE}/devenv.sh ./bin/Release && ctest --output-on-failure -VV -C $BUILD_TYPE --debug
- uses: actions/upload-artifact@v2
with:
name: artifact-${{github.sha}}-windows
path: ${{runner.workspace}}\ShapeWorks\artifacts
- name: Check Disk Space4
working-directory: ${{runner.workspace}}
shell: bash -l {0}
run: df -h
- name: Deploy
if: github.ref == 'refs/heads/master'
uses: marvinpinto/action-automatic-releases@latest
with:
repo_token: "${{ secrets.GITHUB_TOKEN }}"
automatic_release_tag: "dev-windows"
prerelease: true
title: "Development Build for Windows"
files: |
d:/a/ShapeWorks/ShapeWorks/artifacts/*.exe
- name: Copy artifact
shell: bash -l {0}
run: cd /d/a/ShapeWorks/ShapeWorks/artifacts && ${GITHUB_WORKSPACE}/.github/workflows/copy_artifact.sh artifact-${{github.sha}}-windows *