Feature request: include incomplete assemblies in DB

[schorlton]

I edited

CDKAM/rsync_from_ncbi.pl

Line 42 in b059aab

next unless grep {$asm_level eq $_} ("Complete Genome", "Chromosome");

to also accept Contig and Scaffold level assemblies when downloading the DB however this causes a segfault.

CDKAM-1.0]$ ./build_database.sh refseq/                                      
Loading archaea.txt
Loading bacteria.txt
Loading viral.txt
Loading fungi.txt
Loading human.txt
The first step: collecting kmers.
./build_database.sh: line 40:  6810 Segmentation fault      $LDIR/buildDB $LDIR/$1/targets.txt $LDIR/$1/nameFamily.txt $LDIR/$1/database_full.txt
The second step: solving kmers collision.
^C