__init__.py

from .APT import (author_to_firstname_lastname, automated_pdf_tagging, check_record_type, calculate_tag_counts, collapse_authors, collect_PDF_files, construct_keylist, convert_unicode_from_string, correct_authornames, create_summaries, filter_uniques_from_list, find_keywords, fix_broken_words, get_filename, guarantee_csv_exists, guarantee_folder_exists, guarantee_md_output_folders_exist, list_filenames, merge_sourcefolder_to_distfolder, pdf2txtfolder, populate_placeholders, populate_with_template, prepare_input, preprocess_text, remove_special_characters, remove_trailing_backslashes, reset_eof_of_pdf_return_stream, set_additional_keywords, sort_joined_list, tag_csv, tag_file_weighted, tag_folder, tag_folder_weighted, unicodecleanup_folder, write_article_summaries, write_author_summaries, write_bib, write_journal_summaries)
from .construct_keylist import (bigram_extraction, clean_keywords, construct_keylist, do_clean, extract_tags, generate_folder_structure, generate_keylist, get_original_keywords, guarantee_folder_exists, import_bib, keybert_extraction,  rake_extraction,  textrank_calculation, visualize_textrank_graph, textrank_extraction, topicrank_calculation, topicrank_extraction, tf_idf_extraction, yake_extraction)
from .download_pdf import (get_article, get_article_by_author, get_author_bibliography, get_author_metadata, get_author_publications, get_first_article, lookup_author, scihub_download, scihub_download_pdf)
from .extract_references import (extract_references_from_file)
from .scholar_record_extraction import (download_articles, rotate_proxy)
from .weighted_tagging import (clean_end_section, count_keyword_occurrences, denest_and_order_dict, extract_sections, filter_values, listdir,  nested_dict_to_dataframe, open_file, prepare_bytes_for_pattern, print_nested_dict, save_dataframe, split_text_to_sections)
from .graph import (collect_data_from_csv, create_network_lists, file_name_to_title, find_value_and_delete_upper_level_entry, flatten_nested_dict_value_to_list, graph_view, link_from_file, link_from_folder, link_items_to_source, parse_data_from_csv, remove_dead_links_from_reference_dict, replace_filenames_by_title)
from .summarization import (generate_sentence_tokens, remove_repeating_sentences, summarize_file, summarize_text, summarize_tokens)
from .subsampling import (generate_binary_item_matrix, generate_bray_curtis_dissimilarity, calculate_euclidean_distance_matrix, select_items_by_distance, get_selected_coordinates, get_sample_id, subsample_from_csv, plot_array, transform_dataframe, assign_group)
from .deduplication import (group_tags_by_dissimilarity, generate_tag_dissimilarity, deduplicate_tag_conjugations, deduplicate_dataframe, merge_similar_tags_from_dataframe, count_tag_occurrence, drop_0_columns, drop_unique_columns, plot_pca_tags)
from .semantic_scholar import(batch_collect_author_metadata, batch_collect_paper_metadata, batch_collect_recommendation_metadata, dict_to_csv, fetch_authors_semantic_scholar, fetch_metadata_semantic_scholar, fetch_recommendations_semantic_scholar, fetch_query_semantic_scholar, json_author_to_dict, json_paper_to_dict, json_recommendation_to_dict, query_to_csv)
from .query_expansion import(count_title_matches_from_list, find_optimal_query, count_title_matches, merge_words_by_stem_and_wildcards, propose_tags, pca_biplot, group_fuzzy_words, group_synonyms, auto_optimize_query, verify_query, test_query, generate_query_combinations, generate_queries, expand_query_with_tag_similarity, pseudo_relevance_feedback, similarity_feedback, group_related_words, pca_tags, select_relevant_tags, emulate_query)