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Failed to open the database file - Program halted (file path variable related error) #4
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This seems to be the problematic section:
A few lines above it, dirname is set as follows:
|
The problem is on these lines:
If "filename.strip()" is substituted in variables "ts" and "ts1", like:
And
I think the problem will be solved for using Oases as assembler. Let's try. For SOAPdenovo, I don't recommend doing this, because it is not necessary to get it working. |
I've tested the recommendations above. But it seems algorithm still doesn't recognize files generated by itself:
Looking at the folders, these files were generated and filled by the software normally, until k-mer 31 cycle. After that, the workflow breaks:
All the commands were typed using root account. |
Hi Folks, looks like there is a small error in the KREATION.py script when it executes cd-hit-est. Please see reproduced error below - I think, when the cd-hit-est step is being executed, its not picking up the correct path for the *transcripts_org_clu.fa file and then cd-hit-est crashes.
Looks like the mv command fails due to an operand being missing and then the cd-hit-est fails due to an incomplete path. A quick fix will be much appreciated.
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