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1.2.3 #483

Merged
merged 38 commits into from
Oct 18, 2017
Merged

1.2.3 #483

merged 38 commits into from
Oct 18, 2017

Commits on Oct 6, 2017

  1. increment version number

    @maxulysse
    maxulysse committed Oct 6, 2017
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  2. generalizing container configuration

    @maxulysse
    maxulysse committed Oct 6, 2017
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  3. enhance tests

    @maxulysse
    maxulysse committed Oct 6, 2017
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Commits on Oct 9, 2017

  1. remove old behavior for VEP

    @maxulysse
    maxulysse committed Oct 9, 2017
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  2. fix containers

    @maxulysse
    maxulysse committed Oct 9, 2017
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  3. update tag

    @maxulysse
    maxulysse committed Oct 9, 2017
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  4. code polishing

    @maxulysse
    maxulysse committed Oct 9, 2017
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  5. simplify tests

    @maxulysse
    maxulysse committed Oct 9, 2017
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  6. update containers

    @maxulysse
    maxulysse committed Oct 9, 2017
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  7. code polishing

    @maxulysse
    maxulysse committed Oct 9, 2017
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  8. update test

    @maxulysse
    maxulysse committed Oct 9, 2017
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  9. update test

    @maxulysse
    maxulysse committed Oct 9, 2017
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  10. add files for test

    @maxulysse
    maxulysse committed Oct 9, 2017
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Commits on Oct 10, 2017

  1. add IMPACT fiel to VEP

    @maxulysse
    maxulysse committed Oct 10, 2017
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  2. closes nf-core#481

    @maxulysse
    maxulysse committed Oct 10, 2017
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  3. Revert "closes nf-core#481" 

    This reverts commit fb66cc8.
    @maxulysse
    maxulysse committed Oct 10, 2017
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  4. sort tests

    @maxulysse
    maxulysse committed Oct 10, 2017
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  5. add runOptions = to sort out running singularity on scratch

    @maxulysse
    maxulysse committed Oct 10, 2017
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  6. enhance skeleton script

    @maxulysse
    maxulysse committed Oct 10, 2017
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Commits on Oct 11, 2017

  1. enchance script

    @maxulysse
    maxulysse committed Oct 11, 2017
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  2. closes nf-core#480

    @maxulysse
    maxulysse committed Oct 11, 2017
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  3. add informations on files used

    @maxulysse
    maxulysse committed Oct 11, 2017
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  4. fix multiQC config file

    @maxulysse
    maxulysse committed Oct 11, 2017
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  5. add parameters configuration to containers

    @maxulysse
    maxulysse committed Oct 11, 2017
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  6. update help

    @maxulysse
    maxulysse committed Oct 11, 2017
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  7. code polishing

    @maxulysse
    maxulysse committed Oct 11, 2017
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  8. update .gitignore file

    @maxulysse
    maxulysse committed Oct 11, 2017
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  9. code polishing

    @maxulysse
    maxulysse committed Oct 11, 2017
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Commits on Oct 12, 2017

  1. params.tag by default is version + code polishing

    @maxulysse
    maxulysse committed Oct 12, 2017
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Commits on Oct 16, 2017

  1. fix tag for container management

    @maxulysse
    maxulysse committed Oct 16, 2017
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  2. arrange VEP configuration

    @maxulysse
    maxulysse committed Oct 16, 2017
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  3. params defining containers moved to more suited location

    @maxulysse
    maxulysse committed Oct 16, 2017
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  4. correct snpEFF output + move some default params to main

    @maxulysse
    maxulysse committed Oct 16, 2017
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  5. move some default params to main

    @maxulysse
    maxulysse committed Oct 16, 2017
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  6. move all default params to their scripts

    @maxulysse
    maxulysse committed Oct 16, 2017
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Commits on Oct 17, 2017

  1. code polishing

    @maxulysse
    maxulysse committed Oct 17, 2017
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  2. add sub lists of containers

    @maxulysse
    maxulysse committed Oct 17, 2017
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  3. code polishing

    @maxulysse
    maxulysse committed Oct 17, 2017
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