Skip to content
This repository has been archived by the owner on Jan 27, 2020. It is now read-only.

Run bamQC on the recalibrated BAMs #720

Merged
merged 2 commits into from
Jan 31, 2019
Merged

Run bamQC on the recalibrated BAMs #720

merged 2 commits into from
Jan 31, 2019

Conversation

maxulysse
Copy link
Member

  • removed old channels and comments
  • The second BamQC (and samtools stats) are now run on the recalibrated BAMs (before it was on the MarkDuplicates)

PR checklist

  • PR is made against dev branch
  • This comment contains a description of changes (with reason)
  • Ensure the test suite passes (./scripts/test.sh -p docker -t ALL).
  • CHANGELOG.md is updated

szilvajuhos
szilvajuhos approved these changes Jan 31, 2019
View reviewed changes
Copy link
Collaborator

@szilvajuhos szilvajuhos left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

OK

@szilvajuhos szilvajuhos merged commit 720e439 into SciLifeLab:dev Jan 31, 2019
@maxulysse maxulysse deleted the BamQC branch February 1, 2019 12:05
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Reviewers

@szilvajuhos szilvajuhos szilvajuhos approved these changes

@alneberg alneberg Awaiting requested review from alneberg

Assignees
No one assigned
Labels
ready to merge
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

None yet
2 participants
@maxulysse @szilvajuhos