Add igvtools 2.1.7 and snpEff 2.1b

SciLifeLab · Jun 15, 2012 · b3fe965 · b3fe965
1 parent af78557
commit b3fe965
Show file tree

Hide file tree

Showing 2 changed files with 42 additions and 6 deletions.
diff --git a/ucsc_tools/4 → igvtools/2.1.7 b/ucsc_tools/4 → igvtools/2.1.7
@@ -1,6 +1,6 @@
 #%Module1.0#####################################################################
 ##
-## ucsc_tools modulefile
+## CRISP modulefile
 ##
 
 source $env(MODULE_INCLUDE)/functions.tcl
@@ -9,19 +9,19 @@ getCluster
 set components [ file split [ module-info name ] ]
 set version [ lindex $components 1 ]
 
-set     modroot         /proj/a2010002/nobackup/sw/mf/bioinfo-tools/misc/ucsc_tools/20120530/bin
+set     modroot          /proj/a2010002/nobackup/sw/mf/bioinfo-tools/igvtools/2.1.7/IGVTools
 
 proc ModulesHelp { } {
         global version modroot
 
-        puts stderr "\tucsc_tools - use ucsc_tools $version"
+        puts stderr "\tigvtools - use igvtools $version"
         puts stderr "\n\tVersion $version\n"
 }
 
-module-whatis   "Loads ucsc_tools environment."
+module-whatis   "Loads igvtools environment."
 
 # Only one version at a time
-conflict ucsc_tools
+conflict igvtools
 
 #Log loading to syslog
 logToSyslog
@@ -32,4 +32,4 @@ prepend-path    PATH            $modroot
 
 # Environments for the program:
 #
-setenv               UCSCTOOLS_HOME      $modroot
+setenv               IGVTOOLS_HOME      $modroot
diff --git a/snpEff/2.1b b/snpEff/2.1b
@@ -0,0 +1,36 @@
+#%Module1.0#####################################################################
+##
+## snpEff modulefile
+##
+
+source $env(MODULE_INCLUDE)/functions.tcl
+getCluster
+
+set components [ file split [ module-info name ] ]
+set version [ lindex $components 1 ]
+
+set     modroot          /proj/a2010002/nobackup/sw/mf/bioinfo-tools/snpEff/snpEff_2_1b
+
+proc ModulesHelp { } {
+        global version modroot
+
+        puts stderr "\tsnpEff - use snpEff $version"
+        puts stderr "\n\tVersion $version\n"
+}
+
+module-whatis   "Loads snpEff environment."
+
+# Only one version at a time
+conflict snpEff
+
+#Log loading to syslog
+logToSyslog
+
+# Directories for the program:
+#
+prepend-path    PATH            $modroot
+prepend-path    CLASSPATH       $modroot
+
+# Environments for the program:
+#
+setenv               SNPEFF_HOME      $modroot