README.md

Hi there 👋

Here is Serena! On my GitHub page, you'll find my coding projects and open-source contributions that span at the interface between
Structural Biochemistry, Algorithms and Software Engineering.

Serena Rosignoli (she/her)
PhD student
Department of Biochemical Sciences - Sapienza University of Rome
Rome, IT

📫 How to reach me: serena.rosignoli@uniroma1.it
✒️ Serena Rosignoli on LinkedIn

👇 Index

PyMOL

As a firm believer in open-source initiatives in support of the development of the Molecular Graphics Viewer PyMOL, I have actively contributed to the development of publicly available plugins, articles and general utilities.

Readings

• Boosting the Full Potential of PyMOL with Structural Biology Plugins

Plugins

• DockingPie: a Consensus Docking Plugin for PyMOL - DOI

• PyMod: a complete suite for Structural Bioinformatics

• PyPCN: Protein Contacts Networks in PyMOL - DOI

Utilities

• Browse all here
  • PyMOL Conda environment: a script to overcome the known PyMOL issue 'CommandNotFoundError: No command 'conda conda'
  • Threading processes in PyMOL plugins: a demo-tutorial to integrate PLUGINS + DIALOGS + THREADS with PyQt5 in PyMOL

Talks and Lectures

Some material from my past talks and lectures can be found here

• Introduction to Molecular Docking @CIVIS-Summer School; @MEDILS Summer School.
• DockingPie: DockingPie 2021, DockingPie 2023
• Data Analysis course presentation Sampling Distributions and the Bootstrap

Algorithms Specialization - Stanford - Coursera

• Programming Assignments

Python for Bioinformatics toolbox

• Bioinfo-Python-toolbox

Structural Bioinformatics with R

• Tutorial on ROC curves for Molecular Docking performance evaluation Tutorial - Source Code