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Support for volumetric data #72

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ageorgou opened this issue Sep 4, 2020 · 0 comments
Open

Support for volumetric data #72

ageorgou opened this issue Sep 4, 2020 · 0 comments
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data Handling of LabVIEW or other data NWB Use of the NWB format or its interfaces

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@ageorgou
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ageorgou commented Sep 4, 2020

We already allow a Volume imaging mode, and the acquisitions can be 3D instead of 2D with small changes. However, Plane segmentations are not a good fit for 3D ROIs.
We could shoehorn them into this scheme (e.g. store each ROI under the plane of its starting z coordinate), but ideally we can define an extension for 3D segmentations and use that instead.

Can possibly try with the data from 2016 Nature Methods paper?

EDIT: Spoke too soon! The PlaneSegmentation should support 3D ROIs since NeurodataWithoutBorders/pynwb#688.

@ageorgou ageorgou added data Handling of LabVIEW or other data NWB Use of the NWB format or its interfaces labels Sep 4, 2020
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data Handling of LabVIEW or other data NWB Use of the NWB format or its interfaces
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