R package for the zalpha suite of selection statistics. This package allows the user to run a suite of selection statistics over genomic data. The aim is to identify regions of the genome which have experienced a selective sweep.
Version 0.2.0 is on CRAN.
To install this package from CRAN:
install.packages("zalpha")
To install the development version of this package from github:
- Install the devtools package
install.packages("devtools")
- Load the devtools package
library(devtools)
- Install the zalpha package direct from Github using the install_github function
install_github("chorscroft/zalpha")
For a full explanation of how to use the zalpha package, please see the "zalpha" vignette.
browseVignettes("zalpha")
# or
vignette("zalpha")
If this does not work and you installed the packages directly from Github, try installing using the following code:
install_github("chorscroft/zalpha", build_vignettes=TRUE) # might also have to include the option force=TRUE if the package is already installed
This package requires R version 2.10 or higher.
Optional packages:
- fitdistrplus
- Clare Horscroft
Guy Jacobs for the original development of the Zalpha statistics
I am very open to feedback, bug reports and requests!
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If you have a bug to report or a new feature request, please create a new issue on GitHub.
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If you would like to contribute, please feel free to fork the project and create a pull request on GitHub. A guide to how this works can be found here.
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If you have any other feedback or need support, please email the author.