@SouthGreenPlatform

South Green Bioinformatics platform

Public repostiory of code for bioinformatics applications developed in the South Green Bioinformatics platform

Pinned repositories

  1. TOGGLE

    Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

    Perl 14 6

  2. tutorials

    An open resource material for people who wish to know about bionformatics specially users of the Southgreen Platform. It contains tips, tutorials on bioinformatics analysis and softwares.

    2 3

  3. trainings

    The South Green platform has conducted a series of training courses for several years and this github repository gives access to all trainings.

    HTML 3

  4. TOGGLE-DEV

    Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis (development repository)

    Perl 2 6

  5. galaxy-wrappers

    Galaxy tools from South Green

    Python 2 2

  • Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis (development repository)

    Perl 2 6 GPL-3.0 Updated Oct 17, 2018
  • The South Green platform has conducted a series of training courses for several years and this github repository gives access to all trainings.

    HTML 3 Updated Oct 16, 2018
  • Java Updated Oct 15, 2018
  • Java AGPL-3.0 Updated Oct 15, 2018
  • Java AGPL-3.0 Updated Oct 15, 2018
  • Java AGPL-3.0 Updated Oct 15, 2018
  • Java AGPL-3.0 Updated Oct 15, 2018
  • Java AGPL-3.0 Updated Oct 15, 2018
  • Java AGPL-3.0 Updated Oct 15, 2018
  • Mongo Genotyping DataBase

    Java Updated Oct 12, 2018
  • daTALbase - Database for TAL Effectors analysis

    HTML 1 GPL-3.0 Updated Oct 10, 2018
  • Python 1 GPL-3.0 Updated Oct 9, 2018
  • Galaxy tools from South Green

    Python 2 2 Updated Oct 4, 2018
  • Java Updated Sep 27, 2018
  • An open resource material for people who wish to know about bionformatics specially users of the Southgreen Platform. It contains tips, tutorials on bioinformatics analysis and softwares.

    2 3 Updated Sep 22, 2018
  • HTML Updated Aug 31, 2018
  • Export handlers for mgdb

    Java 1 Updated Jul 2, 2018
  • Genotype Investigator for Genome Wide Analyses

    Java 1 Updated Jul 2, 2018
  • HTML Updated Jun 26, 2018
  • AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.

    Java 1 2 Updated Jun 21, 2018
  • Python GPL-3.0 Updated Jun 8, 2018
  • Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

    Perl 14 6 GPL-3.0 Updated May 24, 2018
  • Updated Apr 11, 2018
  • Tools to order scaffolds into chromosomes based on genetic mapping data

    Python 2 GPL-3.0 Updated Mar 23, 2018
  • R Updated Jan 29, 2018
  • Tools to correct genome assembly using NGS data

    Python 2 GPL-3.0 Updated Dec 4, 2017
  • Perl GPL-3.0 Updated Nov 2, 2017
  • JavaScript Updated Oct 5, 2017
  • Tripal CV Browser extension.

    PHP 1 Updated Apr 7, 2017
  • Coding data, filtering, correcting GE, (partial ) imputing, a

    R GPL-3.0 Updated Feb 15, 2017
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