South Green Bioinformatics platform

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis (development repository)

The South Green platform has conducted a series of training courses for several years and this github repository gives access to all trainings.

Mongo Genotyping DataBase

daTALbase - Database for TAL Effectors analysis

Galaxy tools from South Green

An open resource material for people who wish to know about bionformatics specially users of the Southgreen Platform. It contains tips, tutorials on bioinformatics analysis and softwares.

Export handlers for mgdb

Genotype Investigator for Genome Wide Analyses

AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

Tools to order scaffolds into chromosomes based on genetic mapping data

Tools to correct genome assembly using NGS data

Tripal CV Browser extension.

Coding data, filtering, correcting GE, (partial ) imputing, a