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@SouthGreenPlatform

South Green Bioinformatics platform

Public repository of code for bioinformatics applications developed in the South Green Bioinformatics platform

Pinned

  1. panache panache Public

    Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-…

    Vue 42 4

  2. Gigwa2 Gigwa2 Public

    JavaScript 9 8

  3. tutorials tutorials Public

    An open resource material for people who wish to know about bioinformatics specially users of the Southgreen Platform (https://southgreenplatform.github.io/tutorials/). It contains tips, tutorials …

    4 4

  4. trainings trainings Public

    The South Green platform has conducted a series of training courses for several years and this github repository gives access to all trainings (https://southgreenplatform.github.io/trainings/).

    9 11

  5. culebrONT culebrONT Public archive

    A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.

    Python 36 8

  6. rap-green rap-green Public

    Phylogenetic tree management, exploration and display package

    PHP 6 5

Repositories

8 results for all repositories written in JavaScript sorted by last updated
Showing 8 of 8 repositories
  • Gigwa2 Public
    JavaScript 9 AGPL-3.0 8 15 4 Updated May 23, 2024
  • AgroLD_webapp Public

    AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. The aim of the Agronomic Linked Data (AgroLD) project is to provide a portal for bioinformatics and domain experts to exploit the homogenized data models towards efficiently generating research hypotheses.

    JavaScript 8 GPL-3.0 2 16 7 Updated Apr 29, 2024
  • metaXplor Public

    Store, share, explore, manipulate metagenomic data

    JavaScript 0 AGPL-3.0 1 0 0 Updated Jul 7, 2023
  • GeLoc Public

    Geloc provides convenient tools to visualised and download LRR genes family annotation data.

    JavaScript 1 0 0 0 Updated Apr 11, 2023
  • GeMo Public

    A mosaic genome painting tool for plant genomes

    JavaScript 13 GPL-3.0 1 7 0 Updated Feb 3, 2023
  • DataViz Public
    JavaScript 0 0 0 14 Updated Dec 6, 2022
  • JavaScript 0 0 0 5 Updated Oct 20, 2022
  • JavaScript 0 0 0 5 Updated Oct 20, 2022