South Green Bioinformatics platform
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- Montpellier
- http://www.southgreen.fr/
- @green_bioinfo
Pinned
Repositories
- AgroLD_ETL Public
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. AgroLD ETL is the Python packages developed to transform plant datasets in RDF. Packages are developped for data standards such as GFF,GAF, VCF and specific plant databases.
- VcfHunter Public
VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered…
- training_reproducible_research Public
Training on Tools for Reproducible Research given by SouthGreen
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- sugarcane-origins Public
Scripts used to determine the origin of SNPs in the publication 'Three founding ancestral genomes involved in the origin of sugarcane'.
- Uniqprimer Public