Expand Disease Ontology bot properties

[stuppie]

has phenotype
Uses: http://www.ontobee.org/ontology/DOID?iri=http://purl.obolibrary.org/obo/RO_0002200
Wikidata Prop: symptoms
Values: Human Phenotype Ontology (not in wikidata)
relies on: #26

located in
Uses: http://www.ontobee.org/ontology/DOID?iri=http://purl.obolibrary.org/obo/RO_0001025
Wikidata Prop: anatomical location
Values: Mostly UBERON (841/~15k exist) and Cell Ontology (not in wikidata)

transmitted by
Uses: http://www.ontobee.org/ontology/DOID?iri=http://purl.obolibrary.org/obo/RO_0002451
Wikidata Prop: A lot of discussion here
Values: NCBI Taxon

has material basis in
Uses: http://www.ontobee.org/ontology/DOID?iri=http://purl.obolibrary.org/obo/IDO_0000664
Wikidata Prop: A lot of discussion here
Values: NCBI Taxon

[stuppie]

The 'location' predicate in WD is used to link diseases to anatomical entities that they affect. In other sources this type of association may be captured using predicates like part_of or affects.

[stuppie]

Anatomical location is currently running for any items that have an Uberon ID

https://github.com/SuLab/scheduled-bots/blob/master/scheduled_bots/ontology/obographs_DO.py#L38
https://www.wikidata.org/wiki/Q47912#P927

[andrawaag]

Propose:

transmitted by
Uses: http://www.ontobee.org/ontology/DOID?iri=http://purl.obolibrary.org/obo/RO_0002451
Wikidata Prop: A lot of discussion here
Values: NCBI Taxon

has material basis in
Uses: http://www.ontobee.org/ontology/DOID?iri=http://purl.obolibrary.org/obo/IDO_0000664
Wikidata Prop: A lot of discussion here
Values: NCBI Taxon

[turoger]

Propose:

transmitted by is now Pathogen Transmission Process (P1060)
Uses: http://www.ontobee.org/ontology/DOID?iri=http://purl.obolibrary.org/obo/RO_0002451
Wikidata Prop: A lot of discussion here
Values: NCBI Taxon

has material basis in
Uses: http://www.ontobee.org/ontology/DOID?iri=http://purl.obolibrary.org/obo/IDO_0000664
Wikidata Prop: A lot of discussion here
Values: NCBI Taxon

The link to has material basis in is to P1060