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jakebeal committed Nov 30, 2017
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Expand Up @@ -5,7 +5,7 @@ \section{SBOL Visual Diagram Language}

An SBOL Visual diagram represents information about the structure of a nucleic acid design and its associated molecular species and interactions.
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If desired, an SBOL Visual diagram may also be associated with a machine-interpretable model, such as SBOL, GenBank, or SBML.
If desired, an SBOL Visual diagram may also be associated with a machine-interpretable model (e.g., in SBOL, GenBank, or SBML format).
In this document we describe the association for SBOL 2 data models, which provides a formal semantic grounding for all elements of an SBOL Visual diagram, but equivalent associations may be made between diagram elements and other models.
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In terms of SBOL 2 data models, the description of a nucleic acid design is formally defined as representation of a \sbol{ComponentDefinition} with a nucleic acid \sbol{type}, the \sbol{Component} and \sbol{SequenceAnnotation} objects describing the features and sub-structure of the design, and \sbol{SequenceConstraint} information on the relative positions of such elements.
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